ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473667.1| Oryza sativa (japonica cultivar-group), predic... 161 3e-36
2emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4,... 161 3e-36
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
4dbj|AK102568.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
5dbj|AK058492.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
6gb|AY108121.1| Zea mays PCO103023 mRNA sequence 131 3e-27
7ref|NM_125993.2| Arabidopsis thaliana unknown protein AT5G65960 ... 52 0.002
8gb|AY117200.1| Arabidopsis thaliana unknown protein (At5g65960) ... 52 0.002
9gb|AY065381.1| Arabidopsis thaliana unknown protein (At5g65960) ... 52 0.002
10emb|BX832499.1|CNS09ZUP Arabidopsis thaliana Full-length cDNA Co... 52 0.002
11emb|BX833409.1|CNS09Z2J Arabidopsis thaliana Full-length cDNA Co... 52 0.002
12gb|AY085390.1| Arabidopsis thaliana clone 149624 mRNA, complete ... 52 0.002
13dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 52 0.002
14ref|XM_463537.1| Oryza sativa (japonica cultivar-group), predic... 42 1.9
15gb|AC155248.2| Mus musculus BAC clone RP24-243O10 from chromosom... 42 1.9
16gb|AF342751.1| Chroodactylon ramosum 18S small subunit ribosomal... 42 1.9
17gb|AF342750.1| Rhodosorus marinus 18S small subunit ribosomal RN... 42 1.9
18emb|AJ010592.2|GTAJ10592 Guillardia theta DNA for complete seque... 42 1.9
19gb|AC113391.2| Homo sapiens chromosome 5 clone RP11-375B1, compl... 42 1.9
20gb|U53125.1|CCU53125 Hanusia phi nucleomorph 18S ribosomal RNA g... 42 1.9
21gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3... 42 1.9
22gb|AF165818.4|AF165818 Guillardia theta nucleomorph chromosome 1... 42 1.9
23gb|AF168633.1| Stylonema alsidii strain UTEX LB 1424 18S ribosom... 42 1.9
24gb|AF168628.1| Chroodactylon ornatum 18S ribosomal RNA gene, par... 42 1.9
25gb|AF168626.1| Rhodosorus sp. CCMP1530 18S ribosomal RNA gene, p... 42 1.9
26gb|AF168625.1| Rhodosorus marinus 18S ribosomal RNA gene, partia... 42 1.9
27gb|AF168622.1| Stylonema cornu-cervi 18S ribosomal RNA gene, par... 42 1.9
28dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
29dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
30dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
31dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
32dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
33gb|AC091902.2| Homo sapiens chromosome 5 clone RP11-16L24, compl... 42 1.9
34dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
35dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
36gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromoso... 42 1.9
37dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
38dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
39dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
40dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
41dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
42gb|AY617153.1| Stylonema alsidii isolate JAW4053 18S ribosomal R... 42 1.9
43dbj|AP005649.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
44emb|X57008.1|CP18SNM Cryptomonas PHI small subunit rRNA gene (nu... 42 1.9
45emb|AL929594.17| Zebrafish DNA sequence from clone CH211-196L2 i... 42 1.9
46gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
47emb|AL844499.5|CNS08CAW Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.9
48emb|AL732534.4|CNS08C99 Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.9
49gb|L26204.1|SYZFRA Stylonema alsidii DNA fragment 42 1.9
50gb|AC153490.1| Mus musculus BAC RP23-210M12 (Roswell Park Cance... 40 7.5
51gb|AC113544.9| Mus musculus chromosome 10, clone RP23-227F5, com... 40 7.5
52emb|AL627431.4| Human DNA sequence from clone RP11-235O2 on chro... 40 7.5
53gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cd... 40 7.5
54emb|AL157701.2| Human DNA sequence from clone RP4-628F15 on chro... 40 7.5
55emb|AL122003.17|HSJ659I19 Human DNA sequence from clone RP4-659I... 40 7.5
56emb|BX469889.7| Zebrafish DNA sequence from clone DKEY-156P3 in ... 40 7.5
57gb|AC104029.5| Homo sapiens chromosome 8, clone RP11-478B14, com... 40 7.5
58gb|AC104000.5| Homo sapiens chromosome 8, clone RP11-97N12, comp... 40 7.5
59dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 7.5
60dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 40 7.5
61gb|AC104447.2| Homo sapiens chromosome 3 clone RP11-447D11, comp... 40 7.5
62gb|AC097501.3| Homo sapiens BAC clone RP11-340A13 from 4, comple... 40 7.5
63emb|BX296525.5| Zebrafish DNA sequence from clone CH211-252F24 i... 40 7.5
64gb|AC010425.6| Homo sapiens chromosome 5 clone CTD-2196P11, comp... 40 7.5
65tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform ... 40 7.5
66ref|NM_178305.1| Danio rerio receptor-associated protein of the ... 40 7.5
67emb|BX470166.11| Zebrafish DNA sequence from clone CH211-238N5 i... 40 7.5
68emb|CR392341.14| Zebrafish DNA sequence from clone CH211-222E20 ... 40 7.5
69emb|AM231295.1| Didymium dubium partial 18S rRNA gene, isolate K15 40 7.5
70dbj|AB070208.1| Danio rerio rapsyn mRNA, complete cds 40 7.5 
>ref|XM_473667.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1257

 Score =  161 bits (81), Expect = 3e-36
 Identities = 117/129 (90%)
 Strand = Plus / Minus

                                                                        
Query: 349  tatcaccaaacatggttgccattttcatggctatcttggcagccatctccctcctctgga 408
            ||||||||||||||||||||||||||||||| | |||||||||||||||  |||| ||||
Sbjct: 1228 tatcaccaaacatggttgccattttcatggcaagcttggcagccatctctttcctttgga 1169

                                                                        
Query: 409  agtcaggaacgagcctcaggttggagcgcatgttgccaatctctgacattagtctctcca 468
            ||||||| | |||||| |  |||||||||||||||||||||||||||||||| | |||||
Sbjct: 1168 agtcaggcatgagccttaaattggagcgcatgttgccaatctctgacattagccgctcca 1109

                     
Query: 469  gatcatcta 477
            |||||||||
Sbjct: 1108 gatcatcta 1100
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>emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013K16,
             complete sequence
          Length = 145739

 Score =  161 bits (81), Expect = 3e-36
 Identities = 117/129 (90%)
 Strand = Plus / Minus

                                                                         
Query: 349   tatcaccaaacatggttgccattttcatggctatcttggcagccatctccctcctctgga 408
             ||||||||||||||||||||||||||||||| | |||||||||||||||  |||| ||||
Sbjct: 17625 tatcaccaaacatggttgccattttcatggcaagcttggcagccatctctttcctttgga 17566

                                                                         
Query: 409   agtcaggaacgagcctcaggttggagcgcatgttgccaatctctgacattagtctctcca 468
             ||||||| | |||||| |  |||||||||||||||||||||||||||||||| | |||||
Sbjct: 17565 agtcaggcatgagccttaaattggagcgcatgttgccaatctctgacattagccgctcca 17506

                      
Query: 469   gatcatcta 477
             |||||||||
Sbjct: 17505 gatcatcta 17497
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  161 bits (81), Expect = 3e-36
 Identities = 117/129 (90%)
 Strand = Plus / Minus

                                                                            
Query: 349      tatcaccaaacatggttgccattttcatggctatcttggcagccatctccctcctctgga 408
                ||||||||||||||||||||||||||||||| | |||||||||||||||  |||| ||||
Sbjct: 29514936 tatcaccaaacatggttgccattttcatggcaagcttggcagccatctctttcctttgga 29514877

                                                                            
Query: 409      agtcaggaacgagcctcaggttggagcgcatgttgccaatctctgacattagtctctcca 468
                ||||||| | |||||| |  |||||||||||||||||||||||||||||||| | |||||
Sbjct: 29514876 agtcaggcatgagccttaaattggagcgcatgttgccaatctctgacattagccgctcca 29514817

                         
Query: 469      gatcatcta 477
                |||||||||
Sbjct: 29514816 gatcatcta 29514808
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>dbj|AK102568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097L06, full
            insert sequence
          Length = 1593

 Score =  161 bits (81), Expect = 3e-36
 Identities = 117/129 (90%)
 Strand = Plus / Minus

                                                                        
Query: 349  tatcaccaaacatggttgccattttcatggctatcttggcagccatctccctcctctgga 408
            ||||||||||||||||||||||||||||||| | |||||||||||||||  |||| ||||
Sbjct: 1352 tatcaccaaacatggttgccattttcatggcaagcttggcagccatctctttcctttgga 1293

                                                                        
Query: 409  agtcaggaacgagcctcaggttggagcgcatgttgccaatctctgacattagtctctcca 468
            ||||||| | |||||| |  |||||||||||||||||||||||||||||||| | |||||
Sbjct: 1292 agtcaggcatgagccttaaattggagcgcatgttgccaatctctgacattagccgctcca 1233

                     
Query: 469  gatcatcta 477
            |||||||||
Sbjct: 1232 gatcatcta 1224
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>dbj|AK058492.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-E04, full
           insert sequence
          Length = 1019

 Score =  161 bits (81), Expect = 3e-36
 Identities = 117/129 (90%)
 Strand = Plus / Minus

                                                                       
Query: 349 tatcaccaaacatggttgccattttcatggctatcttggcagccatctccctcctctgga 408
           ||||||||||||||||||||||||||||||| | |||||||||||||||  |||| ||||
Sbjct: 762 tatcaccaaacatggttgccattttcatggcaagcttggcagccatctctttcctttgga 703

                                                                       
Query: 409 agtcaggaacgagcctcaggttggagcgcatgttgccaatctctgacattagtctctcca 468
           ||||||| | |||||| |  |||||||||||||||||||||||||||||||| | |||||
Sbjct: 702 agtcaggcatgagccttaaattggagcgcatgttgccaatctctgacattagccgctcca 643

                    
Query: 469 gatcatcta 477
           |||||||||
Sbjct: 642 gatcatcta 634
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>gb|AY108121.1| Zea mays PCO103023 mRNA sequence
          Length = 823

 Score =  131 bits (66), Expect = 3e-27
 Identities = 111/126 (88%)
 Strand = Plus / Minus

                                                                       
Query: 350 atcaccaaacatggttgccattttcatggctatcttggcagccatctccctcctctggaa 409
           |||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct: 557 atcaccaaacatggctgccattttcatggctagctttgcagccatctccctcctttggaa 498

                                                                       
Query: 410 gtcaggaacgagcctcaggttggagcgcatgttgccaatctctgacattagtctctccag 469
           |||||| | ||| || | ||| || ||||||||||||||||| ||||||| | |||||||
Sbjct: 497 gtcaggcatgagtcttaagtttgatcgcatgttgccaatctccgacattattttctccag 438

                 
Query: 470 atcatc 475
            |||||
Sbjct: 437 gtcatc 432
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>ref|NM_125993.2| Arabidopsis thaliana unknown protein AT5G65960 mRNA, complete cds
          Length = 1454

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 354  ccaaacatggttgccattttcatggctatcttggcagccatctccctcctctggaagtca 413
            ||||||||||  ||||||||||| ||||  || ||||| || |||||||||||||| |||
Sbjct: 1213 ccaaacatggaagccattttcatcgctaaatttgcagctatttccctcctctggaaatca 1154

              
Query: 414  gg 415
            ||
Sbjct: 1153 gg 1152
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>gb|AY117200.1| Arabidopsis thaliana unknown protein (At5g65960) mRNA, complete cds
          Length = 1213

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 354  ccaaacatggttgccattttcatggctatcttggcagccatctccctcctctggaagtca 413
            ||||||||||  ||||||||||| ||||  || ||||| || |||||||||||||| |||
Sbjct: 1148 ccaaacatggaagccattttcatcgctaaatttgcagctatttccctcctctggaaatca 1089

              
Query: 414  gg 415
            ||
Sbjct: 1088 gg 1087
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>gb|AY065381.1| Arabidopsis thaliana unknown protein (At5g65960) mRNA, complete cds
          Length = 1441

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 354  ccaaacatggttgccattttcatggctatcttggcagccatctccctcctctggaagtca 413
            ||||||||||  ||||||||||| ||||  || ||||| || |||||||||||||| |||
Sbjct: 1214 ccaaacatggaagccattttcatcgctaaatttgcagctatttccctcctctggaaatca 1155

              
Query: 414  gg 415
            ||
Sbjct: 1154 gg 1153
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>emb|BX832499.1|CNS09ZUP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH77ZC12 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1314

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 354  ccaaacatggttgccattttcatggctatcttggcagccatctccctcctctggaagtca 413
            ||||||||||  ||||||||||| ||||  || ||||| || |||||||||||||| |||
Sbjct: 1159 ccaaacatggaagccattttcatcgctaaatttgcagctatttccctcctctggaaatca 1100

              
Query: 414  gg 415
            ||
Sbjct: 1099 gg 1098
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>emb|BX833409.1|CNS09Z2J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL53ZA02 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1482

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 354  ccaaacatggttgccattttcatggctatcttggcagccatctccctcctctggaagtca 413
            ||||||||||  ||||||||||| ||||  || ||||| || |||||||||||||| |||
Sbjct: 1200 ccaaacatggaagccattttcatcgctaaatttgcagctatttccctcctctggaaatca 1141

              
Query: 414  gg 415
            ||
Sbjct: 1140 gg 1139
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>gb|AY085390.1| Arabidopsis thaliana clone 149624 mRNA, complete sequence
          Length = 1383

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 354  ccaaacatggttgccattttcatggctatcttggcagccatctccctcctctggaagtca 413
            ||||||||||  ||||||||||| ||||  || ||||| || |||||||||||||| |||
Sbjct: 1155 ccaaacatggaagccattttcatcgctaaatttgcagctatttccctcctctggaaatca 1096

              
Query: 414  gg 415
            ||
Sbjct: 1095 gg 1094
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>dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2A18
          Length = 79899

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 354  ccaaacatggttgccattttcatggctatcttggcagccatctccctcctctggaagtca 413
            ||||||||||  ||||||||||| ||||  || ||||| || |||||||||||||| |||
Sbjct: 3643 ccaaacatggaagccattttcatcgctaaatttgcagctatttccctcctctggaaatca 3584

              
Query: 414  gg 415
            ||
Sbjct: 3583 gg 3582
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>ref|XM_463537.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 6006

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 161  atggctaaatatctggaagaa 181
            |||||||||||||||||||||
Sbjct: 4573 atggctaaatatctggaagaa 4593
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>gb|AC155248.2| Mus musculus BAC clone RP24-243O10 from chromosome 13, complete
             sequence
          Length = 181818

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 185   tgaggtacaaaatttgtgtga 205
             |||||||||||||||||||||
Sbjct: 48753 tgaggtacaaaatttgtgtga 48773
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>gb|AF342751.1| Chroodactylon ramosum 18S small subunit ribosomal RNA gene, complete
            sequence
          Length = 1772

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 82   cctaagagaaatcaaagtctt 102
            |||||||||||||||||||||
Sbjct: 1070 cctaagagaaatcaaagtctt 1090
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>gb|AF342750.1| Rhodosorus marinus 18S small subunit ribosomal RNA gene, complete
            sequence
          Length = 1789

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 82   cctaagagaaatcaaagtctt 102
            |||||||||||||||||||||
Sbjct: 1063 cctaagagaaatcaaagtctt 1083
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>emb|AJ010592.2|GTAJ10592 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2
          Length = 180915

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 82     cctaagagaaatcaaagtctt 102
              |||||||||||||||||||||
Sbjct: 174012 cctaagagaaatcaaagtctt 174032



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 82   cctaagagaaatcaaagtctt 102
            |||||||||||||||||||||
Sbjct: 6904 cctaagagaaatcaaagtctt 6884
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>gb|AC113391.2| Homo sapiens chromosome 5 clone RP11-375B1, complete sequence
          Length = 83726

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 388  cagccatctccctcctctgga 408
            |||||||||||||||||||||
Sbjct: 4192 cagccatctccctcctctgga 4172
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>gb|U53125.1|CCU53125 Hanusia phi nucleomorph 18S ribosomal RNA gene, complete sequence
          Length = 2054

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 82   cctaagagaaatcaaagtctt 102
            |||||||||||||||||||||
Sbjct: 1337 cctaagagaaatcaaagtctt 1357
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>gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3, complete sequence
          Length = 174133

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 82     cctaagagaaatcaaagtctt 102
              |||||||||||||||||||||
Sbjct: 167230 cctaagagaaatcaaagtctt 167250



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 82   cctaagagaaatcaaagtctt 102
            |||||||||||||||||||||
Sbjct: 6904 cctaagagaaatcaaagtctt 6884
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>gb|AF165818.4|AF165818 Guillardia theta nucleomorph chromosome 1, complete sequence
          Length = 196216

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 82     cctaagagaaatcaaagtctt 102
              |||||||||||||||||||||
Sbjct: 189313 cctaagagaaatcaaagtctt 189333



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 82   cctaagagaaatcaaagtctt 102
            |||||||||||||||||||||
Sbjct: 6904 cctaagagaaatcaaagtctt 6884
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>gb|AF168633.1| Stylonema alsidii strain UTEX LB 1424 18S ribosomal RNA gene, partial
            sequence
          Length = 1668

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 82   cctaagagaaatcaaagtctt 102
            |||||||||||||||||||||
Sbjct: 1042 cctaagagaaatcaaagtctt 1062
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>gb|AF168628.1| Chroodactylon ornatum 18S ribosomal RNA gene, partial sequence
          Length = 1778

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 82   cctaagagaaatcaaagtctt 102
            |||||||||||||||||||||
Sbjct: 1058 cctaagagaaatcaaagtctt 1078
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>gb|AF168626.1| Rhodosorus sp. CCMP1530 18S ribosomal RNA gene, partial sequence
          Length = 1752

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 82   cctaagagaaatcaaagtctt 102
            |||||||||||||||||||||
Sbjct: 1055 cctaagagaaatcaaagtctt 1075
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>gb|AF168625.1| Rhodosorus marinus 18S ribosomal RNA gene, partial sequence
          Length = 1753

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 82   cctaagagaaatcaaagtctt 102
            |||||||||||||||||||||
Sbjct: 1058 cctaagagaaatcaaagtctt 1078
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>gb|AF168622.1| Stylonema cornu-cervi 18S ribosomal RNA gene, partial sequence
          Length = 1710

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 82   cctaagagaaatcaaagtctt 102
            |||||||||||||||||||||
Sbjct: 1062 cctaagagaaatcaaagtctt 1082
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 161      atggctaaatatctggaagaa 181
                |||||||||||||||||||||
Sbjct: 12559962 atggctaaatatctggaagaa 12559982
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 161     atggctaaatatctggaagaa 181
               |||||||||||||||||||||
Sbjct: 6302115 atggctaaatatctggaagaa 6302095
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 161      atggctaaatatctggaagaa 181
                |||||||||||||||||||||
Sbjct: 28224859 atggctaaatatctggaagaa 28224839
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 161      atggctaaatatctggaagaa 181
                |||||||||||||||||||||
Sbjct: 31400994 atggctaaatatctggaagaa 31401014



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 161     atggctaaatatctggaagaa 181
               |||||||||||||||||||||
Sbjct: 2502692 atggctaaatatctggaagaa 2502712
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 161      atggctaaatatctggaagaa 181
                |||||||||||||||||||||
Sbjct: 38346834 atggctaaatatctggaagaa 38346814



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 161      atggctaaatatctggaagaa 181
                |||||||||||||||||||||
Sbjct: 31139723 atggctaaatatctggaagaa 31139703
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>gb|AC091902.2| Homo sapiens chromosome 5 clone RP11-16L24, complete sequence
          Length = 188877

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 388   cagccatctccctcctctgga 408
             |||||||||||||||||||||
Sbjct: 74601 cagccatctccctcctctgga 74621
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>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0014K08
          Length = 177263

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   atggctaaatatctggaagaa 181
             |||||||||||||||||||||
Sbjct: 66068 atggctaaatatctggaagaa 66048
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>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1065E10
          Length = 183580

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 161    atggctaaatatctggaagaa 181
              |||||||||||||||||||||
Sbjct: 107659 atggctaaatatctggaagaa 107639
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>gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromosome ul, complete sequence
          Length = 230767

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 205    agtgggaaatggcatcaggatttta 229
              |||| ||||||||||||||||||||
Sbjct: 167365 agtgagaaatggcatcaggatttta 167389
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>dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0024K03
          Length = 119796

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 161   atggctaaatatctggaagaa 181
             |||||||||||||||||||||
Sbjct: 83568 atggctaaatatctggaagaa 83588
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>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0623A10
          Length = 156517

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   atggctaaatatctggaagaa 181
             |||||||||||||||||||||
Sbjct: 22888 atggctaaatatctggaagaa 22868
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>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0009H10
          Length = 175754

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 161    atggctaaatatctggaagaa 181
              |||||||||||||||||||||
Sbjct: 155765 atggctaaatatctggaagaa 155745
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>dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1116_C08
          Length = 102317

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   atggctaaatatctggaagaa 181
             |||||||||||||||||||||
Sbjct: 52675 atggctaaatatctggaagaa 52655
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>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0078N11
          Length = 155168

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 161   atggctaaatatctggaagaa 181
             |||||||||||||||||||||
Sbjct: 36391 atggctaaatatctggaagaa 36411
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>gb|AY617153.1| Stylonema alsidii isolate JAW4053 18S ribosomal RNA gene, partial
            sequence
          Length = 1716

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 82   cctaagagaaatcaaagtctt 102
            |||||||||||||||||||||
Sbjct: 1026 cctaagagaaatcaaagtctt 1046
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>dbj|AP005649.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0064G16
          Length = 166453

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 161    atggctaaatatctggaagaa 181
              |||||||||||||||||||||
Sbjct: 118613 atggctaaatatctggaagaa 118633
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>emb|X57008.1|CP18SNM Cryptomonas PHI small subunit rRNA gene (nucleomorph)
          Length = 2039

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 82   cctaagagaaatcaaagtctt 102
            |||||||||||||||||||||
Sbjct: 1311 cctaagagaaatcaaagtctt 1331
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>emb|AL929594.17| Zebrafish DNA sequence from clone CH211-196L2 in linkage group 19,
              complete sequence
          Length = 188746

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 39     atatttgataagttacatatacaat 63
              |||||| ||||||||||||||||||
Sbjct: 103151 atatttcataagttacatatacaat 103127
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 161      atggctaaatatctggaagaa 181
                |||||||||||||||||||||
Sbjct: 12514236 atggctaaatatctggaagaa 12514256
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>emb|AL844499.5|CNS08CAW Oryza sativa chromosome 12, . BAC OSJNBb0092K12 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 129540

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 161  atggctaaatatctggaagaa 181
            |||||||||||||||||||||
Sbjct: 5150 atggctaaatatctggaagaa 5170
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>emb|AL732534.4|CNS08C99 Oryza sativa chromosome 12, . BAC OSJNBb0061N09 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 92799

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 161   atggctaaatatctggaagaa 181
             |||||||||||||||||||||
Sbjct: 56628 atggctaaatatctggaagaa 56648
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>gb|L26204.1|SYZFRA Stylonema alsidii DNA fragment
          Length = 1802

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 82   cctaagagaaatcaaagtctt 102
            |||||||||||||||||||||
Sbjct: 1071 cctaagagaaatcaaagtctt 1091
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>gb|AC153490.1| Mus musculus  BAC RP23-210M12 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 145026

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    ctaacagtaacacaatattt 44
             ||||||||||||||||||||
Sbjct: 54868 ctaacagtaacacaatattt 54849
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>gb|AC113544.9| Mus musculus chromosome 10, clone RP23-227F5, complete sequence
          Length = 177145

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     ctaacagtaacacaatattt 44
              ||||||||||||||||||||
Sbjct: 100914 ctaacagtaacacaatattt 100895
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>emb|AL627431.4| Human DNA sequence from clone RP11-235O2 on chromosome 13, complete
             sequence
          Length = 19955

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   cagcacaaaacctataaagg 129
             ||||||||||||||||||||
Sbjct: 13957 cagcacaaaacctataaagg 13976
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>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced
          Length = 1285452

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    catggaagccttcatcgtca 347
              ||||||||||||||||||||
Sbjct: 236249 catggaagccttcatcgtca 236230
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>emb|AL157701.2| Human DNA sequence from clone RP4-628F15 on chromosome X Contains part
             of a novel gene, complete sequence
          Length = 93008

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   tagaaagtatgaataactct 149
             ||||||||||||||||||||
Sbjct: 91989 tagaaagtatgaataactct 91970
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>emb|AL122003.17|HSJ659I19 Human DNA sequence from clone RP4-659I19 on chromosome 1q42.11-42.3
             Contains a chromosome 9 open reading frame 78 (C9orf78)
             pseudogene, a novel gene (MGC13186), the 3' end of a novel
             gene (FLJ11383) and a CpG island, complete sequence
          Length = 155065

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   tggctaaatatctggaagaa 181
             ||||||||||||||||||||
Sbjct: 98656 tggctaaatatctggaagaa 98637
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>emb|BX469889.7| Zebrafish DNA sequence from clone DKEY-156P3 in linkage group 18,
             complete sequence
          Length = 177975

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   gttgccaatctctgacatta 459
             ||||||||||||||||||||
Sbjct: 27078 gttgccaatctctgacatta 27059
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>gb|AC104029.5| Homo sapiens chromosome 8, clone RP11-478B14, complete sequence
          Length = 177443

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    catggaagccttcatcgtca 347
              ||||||||||||||||||||
Sbjct: 165473 catggaagccttcatcgtca 165492
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>gb|AC104000.5| Homo sapiens chromosome 8, clone RP11-97N12, complete sequence
          Length = 156855

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   catggaagccttcatcgtca 347
             ||||||||||||||||||||
Sbjct: 83990 catggaagccttcatcgtca 83971
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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 59      acaatagctcgttgattcaa 78
               ||||||||||||||||||||
Sbjct: 1892924 acaatagctcgttgattcaa 1892943
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>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    ccttcatcgtcactatcacc 355
              ||||||||||||||||||||
Sbjct: 157195 ccttcatcgtcactatcacc 157214
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>gb|AC104447.2| Homo sapiens chromosome 3 clone RP11-447D11, complete sequence
          Length = 202544

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   ggcatcaggattttataaaa 234
             ||||||||||||||||||||
Sbjct: 69024 ggcatcaggattttataaaa 69043
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>gb|AC097501.3| Homo sapiens BAC clone RP11-340A13 from 4, complete sequence
          Length = 173099

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     acacaatatttgataagtta 53
              ||||||||||||||||||||
Sbjct: 155091 acacaatatttgataagtta 155110
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>emb|BX296525.5| Zebrafish DNA sequence from clone CH211-252F24 in linkage group 10,
             complete sequence
          Length = 160412

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   ctctacagaaggtaaatggc 165
             ||||||||||||||||||||
Sbjct: 22994 ctctacagaaggtaaatggc 22975
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>gb|AC010425.6| Homo sapiens chromosome 5 clone CTD-2196P11, complete sequence
          Length = 107532

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 196   atttgtgtgagtgggaaatggcat 219
             |||| |||||||||||||||||||
Sbjct: 63799 atttttgtgagtgggaaatggcat 63822
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>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene,
              alternatively spliced, complete cds
          Length = 1421559

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    catggaagccttcatcgtca 347
              ||||||||||||||||||||
Sbjct: 236249 catggaagccttcatcgtca 236230
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>ref|NM_178305.1| Danio rerio receptor-associated protein of the synapse, 43kD
           (rapsn), mRNA
          Length = 1239

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 440 gttgccaatctctgacatta 459
           ||||||||||||||||||||
Sbjct: 843 gttgccaatctctgacatta 824
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>emb|BX470166.11| Zebrafish DNA sequence from clone CH211-238N5 in linkage group 18,
              complete sequence
          Length = 117241

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 440    gttgccaatctctgacatta 459
              ||||||||||||||||||||
Sbjct: 114445 gttgccaatctctgacatta 114464
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>emb|CR392341.14| Zebrafish DNA sequence from clone CH211-222E20 in linkage group 10,
              complete sequence
          Length = 208667

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    ctctacagaaggtaaatggc 165
              ||||||||||||||||||||
Sbjct: 196488 ctctacagaaggtaaatggc 196507
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>emb|AM231295.1| Didymium dubium partial 18S rRNA gene, isolate K15
          Length = 1911

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 79   gaacctaagagaaatcaaagtctt 102
            |||||| |||||||||||||||||
Sbjct: 1152 gaaccttagagaaatcaaagtctt 1175
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>dbj|AB070208.1| Danio rerio rapsyn mRNA, complete cds
          Length = 1239

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 440 gttgccaatctctgacatta 459
           ||||||||||||||||||||
Sbjct: 843 gttgccaatctctgacatta 824


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,691,697
Number of Sequences: 3902068
Number of extensions: 5691697
Number of successful extensions: 111836
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111433
Number of HSP's gapped (non-prelim): 403
length of query: 553
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 530
effective length of database: 17,143,297,704
effective search space: 9085947783120
effective search space used: 9085947783120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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