ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21e16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_478920.1| Oryza sativa (japonica cultivar-group), mRNA 101 2e-18
2dbj|AK071404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 80 9e-12
4dbj|AP005437.3| Oryza sativa (japonica cultivar-group) genomic D... 80 9e-12
5dbj|AB093208.1| Zea mays ache mRNA for hypothetical protein, com... 76 1e-10
6ref|XM_478921.1| Oryza sativa (japonica cultivar-group), mRNA 66 1e-07
7ref|XM_478922.1| Oryza sativa (japonica cultivar-group), mRNA 66 1e-07
8dbj|AK099293.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
9dbj|AK073754.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
10dbj|AK060131.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
11gb|AY107095.1| Zea mays PCO131316 mRNA sequence 60 8e-06
12ref|NM_190605.1| Oryza sativa (japonica cultivar-group), predic... 40 7.5
13gb|BC064194.1| Xenopus tropicalis 2-4-dienoyl-Coenzyme A reducta... 40 7.5
14emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, ... 40 7.5
15emb|AL021710.1|ATF28J12 Arabidopsis thaliana DNA chromosome 4, B... 40 7.5
16gb|AC149152.3| Xenopus tropicalis clone ISB-217F3, complete sequ... 40 7.5
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
18gb|AC091657.3| Rattus norvegicus strain Brown Norway clone RP31-... 40 7.5
19dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
20emb|BX649232.1| Mouse DNA sequence from clone RP23-271J11 on chr... 40 7.5
21dbj|AB071333.1| Oryza sativa (japonica cultivar-group) gene for ... 40 7.5
22dbj|AB071332.1| Oryza sativa (indica cultivar-group) gene for qS... 40 7.5
23dbj|AB071331.1| Oryza sativa (japonica cultivar-group) mRNA for ... 40 7.5
24dbj|AB071330.1| Oryza sativa (indica cultivar-group) mRNA for qS... 40 7.5

>ref|XM_478920.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1440

 Score =  101 bits (51), Expect = 2e-18
 Identities = 209/259 (80%), Gaps = 2/259 (0%)
 Strand = Plus / Minus

                                                                        
Query: 243  ccgcaccggatgttcttgtcgaagttgtactggccgccgccgtacccgcaacacacacgc 302
            ||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||  ||
Sbjct: 1081 ccgcaccggatgtccctgtcgaagttgtactcgccgccgccgtacccgcagcacaccagc 1022

                                                                        
Query: 303  agaggatccccaaaaccgaactttttggcttcgctcatcaacttgtacgtggcggcgtac 362
            || || ||||| || |||| ||  ||||| | ||| || | | ||||| |||||| ||| 
Sbjct: 1021 agcgggtccccgaatccgagctgcttggcctggctgatgagcctgtacttggcggagtag 962

                                                                        
Query: 363  acgtcgacgtaggtgaaggcggcctcggggagagccaccctgagcctcgccacggtctcc 422
            ||||||||||||||||  ||||| || ||||| ||| |||| ||||   |||||||||| 
Sbjct: 961  acgtcgacgtaggtgagcgcggcgtccgggagcgccgcccttagccggtccacggtctcg 902

                                                                        
Query: 423  ttgagccgcgcattgaagaactgggggcccggcgttgagcgcgacagagcagcccggcgt 482
               |||| ||| ||||||||| ||| | ||| |||||   ||||| |||||||| |||||
Sbjct: 901  cgcagcctcgcgttgaagaaccgggcggccg-cgttgtaggcgacggagcagcc-ggcgt 844

                               
Query: 483  cgtccttctccgcggcgag 501
            ||||| ||  |||||||||
Sbjct: 843  cgtccctcggcgcggcgag 825



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 102/123 (82%)
 Strand = Plus / Minus

                                                                        
Query: 105  ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 164
            |||||||| |||||||||||   |||| | |||||| | ||||||| |||  |||  || 
Sbjct: 1240 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 1181

                                                                        
Query: 165  gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 224
            ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||
Sbjct: 1180 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 1121

               
Query: 225  ccc 227
            |||
Sbjct: 1120 ccc 1118



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>dbj|AK071404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092E11, full
            insert sequence
          Length = 1439

 Score =  101 bits (51), Expect = 2e-18
 Identities = 209/259 (80%), Gaps = 2/259 (0%)
 Strand = Plus / Minus

                                                                        
Query: 243  ccgcaccggatgttcttgtcgaagttgtactggccgccgccgtacccgcaacacacacgc 302
            ||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||  ||
Sbjct: 1080 ccgcaccggatgtccctgtcgaagttgtactcgccgccgccgtacccgcagcacaccagc 1021

                                                                        
Query: 303  agaggatccccaaaaccgaactttttggcttcgctcatcaacttgtacgtggcggcgtac 362
            || || ||||| || |||| ||  ||||| | ||| || | | ||||| |||||| ||| 
Sbjct: 1020 agcgggtccccgaatccgagctgcttggcctggctgatgagcctgtacttggcggagtag 961

                                                                        
Query: 363  acgtcgacgtaggtgaaggcggcctcggggagagccaccctgagcctcgccacggtctcc 422
            ||||||||||||||||  ||||| || ||||| ||| |||| ||||   |||||||||| 
Sbjct: 960  acgtcgacgtaggtgagcgcggcgtccgggagcgccgcccttagccggtccacggtctcg 901

                                                                        
Query: 423  ttgagccgcgcattgaagaactgggggcccggcgttgagcgcgacagagcagcccggcgt 482
               |||| ||| ||||||||| ||| | ||| |||||   ||||| |||||||| |||||
Sbjct: 900  cgcagcctcgcgttgaagaaccgggcggccg-cgttgtaggcgacggagcagcc-ggcgt 843

                               
Query: 483  cgtccttctccgcggcgag 501
            ||||| ||  |||||||||
Sbjct: 842  cgtccctcggcgcggcgag 824



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 102/123 (82%)
 Strand = Plus / Minus

                                                                        
Query: 105  ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 164
            |||||||| |||||||||||   |||| | |||||| | ||||||| |||  |||  || 
Sbjct: 1239 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 1180

                                                                        
Query: 165  gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 224
            ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||
Sbjct: 1179 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 1120

               
Query: 225  ccc 227
            |||
Sbjct: 1119 ccc 1117



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                        
Query: 243      ccgcaccggatgttcttgtcgaagttgtactggccgccgccgtacccgcaacacac 298
                ||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||
Sbjct: 23761001 ccgcaccggatgtccctgtcgaagttgtactcgccgccgccgtacccgcagcacac 23761056



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 102/123 (82%)
 Strand = Plus / Plus

                                                                            
Query: 105      ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 164
                |||||||| |||||||||||   |||| | |||||| | ||||||| |||  |||  || 
Sbjct: 23760842 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 23760901

                                                                            
Query: 165      gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 224
                ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||
Sbjct: 23760902 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 23760961

                   
Query: 225      ccc 227
                |||
Sbjct: 23760962 ccc 23760964



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                            
Query: 317      accgaactttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggt 376
                ||||| ||| ||||| ||||| |||| ||||||| |||||| ||| ||||||||||||||
Sbjct: 23767340 accgagcttcttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgtaggt 23767399

                              
Query: 377      gaaggcggcctcgg 390
                ||| ||||| ||||
Sbjct: 23767400 gaacgcggcgtcgg 23767413



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 100/124 (80%)
 Strand = Plus / Plus

                                                                            
Query: 104      aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 163
                ||||||||| |||||||||||   |||| |  ||||||||||||| | ||| ||||  ||
Sbjct: 23767024 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 23767083

                                                                            
Query: 164      tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 223
                 ||||| || |||||||| || ||||||||||| | ||||   ||||| ||||| |||||
Sbjct: 23767084 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 23767143

                    
Query: 224      cccc 227
                ||||
Sbjct: 23767144 cccc 23767147



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 125/156 (80%), Gaps = 2/156 (1%)
 Strand = Plus / Plus

                                                                            
Query: 346      tgtacgtggcggcgtacacgtcgacgtaggtgaaggcggcctcggggagagccaccctga 405
                ||||| |||||| ||| ||||||||||||||||  ||||| || ||||| ||| |||| |
Sbjct: 23761194 tgtacttggcggagtagacgtcgacgtaggtgagcgcggcgtccgggagcgccgccctta 23761253

                                                                            
Query: 406      gcctcgccacggtctccttgagccgcgcattgaagaactgggggcccggcgttgagcgcg 465
                |||   ||||||||||    |||| ||| ||||||||| ||| | ||| |||||   |||
Sbjct: 23761254 gccggtccacggtctcgcgcagcctcgcgttgaagaaccgggcggccg-cgttgtaggcg 23761312

                                                    
Query: 466      acagagcagcccggcgtcgtccttctccgcggcgag 501
                || |||||||| |||||||||| ||  |||||||||
Sbjct: 23761313 acggagcagcc-ggcgtcgtccctcggcgcggcgag 23761347



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>dbj|AP005437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1113_E01
          Length = 73706

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                     
Query: 243   ccgcaccggatgttcttgtcgaagttgtactggccgccgccgtacccgcaacacac 298
             ||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||
Sbjct: 15931 ccgcaccggatgtccctgtcgaagttgtactcgccgccgccgtacccgcagcacac 15986



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 102/123 (82%)
 Strand = Plus / Plus

                                                                         
Query: 105   ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 164
             |||||||| |||||||||||   |||| | |||||| | ||||||| |||  |||  || 
Sbjct: 15772 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 15831

                                                                         
Query: 165   gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 224
             ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||
Sbjct: 15832 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 15891

                
Query: 225   ccc 227
             |||
Sbjct: 15892 ccc 15894



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                         
Query: 317   accgaactttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggt 376
             ||||| ||| ||||| ||||| |||| ||||||| |||||| ||| ||||||||||||||
Sbjct: 22270 accgagcttcttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgtaggt 22329

                           
Query: 377   gaaggcggcctcgg 390
             ||| ||||| ||||
Sbjct: 22330 gaacgcggcgtcgg 22343



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 100/124 (80%)
 Strand = Plus / Plus

                                                                         
Query: 104   aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 163
             ||||||||| |||||||||||   |||| |  ||||||||||||| | ||| ||||  ||
Sbjct: 21954 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 22013

                                                                         
Query: 164   tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 223
              ||||| || |||||||| || ||||||||||| | ||||   ||||| ||||| |||||
Sbjct: 22014 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 22073

                 
Query: 224   cccc 227
             ||||
Sbjct: 22074 cccc 22077



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 125/156 (80%), Gaps = 2/156 (1%)
 Strand = Plus / Plus

                                                                         
Query: 346   tgtacgtggcggcgtacacgtcgacgtaggtgaaggcggcctcggggagagccaccctga 405
             ||||| |||||| ||| ||||||||||||||||  ||||| || ||||| ||| |||| |
Sbjct: 16124 tgtacttggcggagtagacgtcgacgtaggtgagcgcggcgtccgggagcgccgccctta 16183

                                                                         
Query: 406   gcctcgccacggtctccttgagccgcgcattgaagaactgggggcccggcgttgagcgcg 465
             |||   ||||||||||    |||| ||| ||||||||| ||| | ||| |||||   |||
Sbjct: 16184 gccggtccacggtctcgcgcagcctcgcgttgaagaaccgggcggccg-cgttgtaggcg 16242

                                                 
Query: 466   acagagcagcccggcgtcgtccttctccgcggcgag 501
             || |||||||| |||||||||| ||  |||||||||
Sbjct: 16243 acggagcagcc-ggcgtcgtccctcggcgcggcgag 16277



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>dbj|AB093208.1| Zea mays ache mRNA for hypothetical protein, complete cds
          Length = 1471

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 95/114 (83%)
 Strand = Plus / Minus

                                                                        
Query: 114  gggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagctgcctctgtc 173
            ||||| ||||| |||||| | |||||||||||||| | ||| ||||  || ||||| || 
Sbjct: 1227 gggtccgagagcgcgccggcgacgatctggtcgaacacgaacttgttggcagcctcggtg 1168

                                                                  
Query: 174  aagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttcccc 227
            |||||||| || ||||||||||| ||||| || |||| |||||| |||||||||
Sbjct: 1167 aagtgcacgccgtcccagctcaccctcttggaggggttctcgcacgacttcccc 1114



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 133/166 (80%)
 Strand = Plus / Minus

                                                                        
Query: 264  aagttgtactggccgccgccgtacccgcaacacacacgcagaggatccccaaaaccgaac 323
            ||||||||| ||||||||||||||||||| ||     ||||||| ||  | || |||| |
Sbjct: 1056 aagttgtaccggccgccgccgtacccgcagcatgtcagcagagggtcgtcgaagccgagc 997

                                                                        
Query: 324  tttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggtgaaggcg 383
            || ||||| | ||| || | ||||||| |||||| ||| ||||||||||||||||| |||
Sbjct: 996  ttcttggcctggctgatgagcttgtacttggcggtgtagacgtcgacgtaggtgaacgcg 937

                                                          
Query: 384  gcctcggggagagccaccctgagcctcgccacggtctccttgagcc 429
            || || ||| | | |  || ||| |||||||| |||||||||||||
Sbjct: 936  gcgtcagggtgcgtcttccggaggctcgccacagtctccttgagcc 891



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>ref|XM_478921.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1757

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 318  ccgaactttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggtg 377
            |||| ||| ||||| ||||| |||| ||||||| |||||| ||| |||||||||||||||
Sbjct: 1312 ccgagcttcttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgtaggtg 1253

                         
Query: 378  aaggcggcctcgg 390
            || ||||| ||||
Sbjct: 1252 aacgcggcgtcgg 1240



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 100/124 (80%)
 Strand = Plus / Minus

                                                                        
Query: 104  aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 163
            ||||||||| |||||||||||   |||| |  ||||||||||||| | ||| ||||  ||
Sbjct: 1547 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 1488

                                                                        
Query: 164  tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 223
             ||||| || |||||||| || ||||||||||| | ||||   ||||| ||||| |||||
Sbjct: 1487 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 1428

                
Query: 224  cccc 227
            ||||
Sbjct: 1427 cccc 1424



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>ref|XM_478922.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1115

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 318 ccgaactttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggtg 377
           |||| ||| ||||| ||||| |||| ||||||| |||||| ||| |||||||||||||||
Sbjct: 661 ccgagcttcttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgtaggtg 602

                        
Query: 378 aaggcggcctcgg 390
           || ||||| ||||
Sbjct: 601 aacgcggcgtcgg 589



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 100/124 (80%)
 Strand = Plus / Minus

                                                                       
Query: 104 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 163
           ||||||||| |||||||||||   |||| |  ||||||||||||| | ||| ||||  ||
Sbjct: 896 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 837

                                                                       
Query: 164 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 223
            ||||| || |||||||| || ||||||||||| | ||||   ||||| ||||| |||||
Sbjct: 836 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 777

               
Query: 224 cccc 227
           ||||
Sbjct: 776 cccc 773



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>dbj|AK099293.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135D02, full
           insert sequence
          Length = 1126

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 318 ccgaactttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggtg 377
           |||| ||| ||||| ||||| |||| ||||||| |||||| ||| |||||||||||||||
Sbjct: 681 ccgagcttcttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgtaggtg 622

                        
Query: 378 aaggcggcctcgg 390
           || ||||| ||||
Sbjct: 621 aacgcggcgtcgg 609



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 100/124 (80%)
 Strand = Plus / Minus

                                                                       
Query: 104 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 163
           ||||||||| |||||||||||   |||| |  ||||||||||||| | ||| ||||  ||
Sbjct: 916 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 857

                                                                       
Query: 164 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 223
            ||||| || |||||||| || ||||||||||| | ||||   ||||| ||||| |||||
Sbjct: 856 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 797

               
Query: 224 cccc 227
           ||||
Sbjct: 796 cccc 793



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>dbj|AK073754.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067M09, full
            insert sequence
          Length = 1757

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 318  ccgaactttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggtg 377
            |||| ||| ||||| ||||| |||| ||||||| |||||| ||| |||||||||||||||
Sbjct: 1312 ccgagcttcttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgtaggtg 1253

                         
Query: 378  aaggcggcctcgg 390
            || ||||| ||||
Sbjct: 1252 aacgcggcgtcgg 1240



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 100/124 (80%)
 Strand = Plus / Minus

                                                                        
Query: 104  aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 163
            ||||||||| |||||||||||   |||| |  ||||||||||||| | ||| ||||  ||
Sbjct: 1547 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 1488

                                                                        
Query: 164  tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 223
             ||||| || |||||||| || ||||||||||| | ||||   ||||| ||||| |||||
Sbjct: 1487 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 1428

                
Query: 224  cccc 227
            ||||
Sbjct: 1427 cccc 1424



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>dbj|AK060131.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B10, full
           insert sequence
          Length = 1117

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 318 ccgaactttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggtg 377
           |||| ||| ||||| ||||| |||| ||||||| |||||| ||| |||||||||||||||
Sbjct: 663 ccgagcttcttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgtaggtg 604

                        
Query: 378 aaggcggcctcgg 390
           || ||||| ||||
Sbjct: 603 aacgcggcgtcgg 591



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 100/124 (80%)
 Strand = Plus / Minus

                                                                       
Query: 104 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 163
           ||||||||| |||||||||||   |||| |  ||||||||||||| | ||| ||||  ||
Sbjct: 898 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 839

                                                                       
Query: 164 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 223
            ||||| || |||||||| || ||||||||||| | ||||   ||||| ||||| |||||
Sbjct: 838 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 779

               
Query: 224 cccc 227
           ||||
Sbjct: 778 cccc 775



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>gb|AY107095.1| Zea mays PCO131316 mRNA sequence
          Length = 1042

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                       
Query: 344 cttgtacgtggcggcgtacacgtcgacgtaggtgaaggcggcctcggggagagccaccct 403
           ||||||| |||||| ||| ||||||||||||||||| ||||| || ||| | | |  || 
Sbjct: 989 cttgtacttggcggtgtagacgtcgacgtaggtgaacgcggcgtcagggtgcgtcttccg 930

                                     
Query: 404 gagcctcgccacggtctccttgagcc 429
           ||| |||||||| |||||||||||||
Sbjct: 929 gaggctcgccacagtctccttgagcc 904



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>ref|NM_190605.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1839

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 ctggccgccgccgtacccgc 291
           ||||||||||||||||||||
Sbjct: 42  ctggccgccgccgtacccgc 23



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>gb|BC064194.1| Xenopus tropicalis 2-4-dienoyl-Coenzyme A reductase 2, peroxisomal,
            mRNA (cDNA clone IMAGE:5307739), partial cds
          Length = 1322

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 72   cattgccctttgccctggca 91
            ||||||||||||||||||||
Sbjct: 1183 cattgccctttgccctggca 1164



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>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49
          Length = 199075

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   tggaaaaataatcctacatt 44
            ||||||||||||||||||||
Sbjct: 9283 tggaaaaataatcctacatt 9264



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>emb|AL021710.1|ATF28J12 Arabidopsis thaliana DNA chromosome 4, BAC clone F28J12 (ESSAII
             project)
          Length = 110102

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    tggaaaaataatcctacatt 44
             ||||||||||||||||||||
Sbjct: 90461 tggaaaaataatcctacatt 90442



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>gb|AC149152.3| Xenopus tropicalis clone ISB-217F3, complete sequence
          Length = 53218

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    cattgccctttgccctggca 91
             ||||||||||||||||||||
Sbjct: 16968 cattgccctttgccctggca 16987



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 272      ctggccgccgccgtacccgc 291
                ||||||||||||||||||||
Sbjct: 36442720 ctggccgccgccgtacccgc 36442739



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>gb|AC091657.3| Rattus norvegicus strain Brown Norway clone RP31-29N16, complete
             sequence
          Length = 141898

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   ggagagccaccctgagcctc 410
             ||||||||||||||||||||
Sbjct: 76542 ggagagccaccctgagcctc 76561



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>dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0005H10
          Length = 142885

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   ctggccgccgccgtacccgc 291
             ||||||||||||||||||||
Sbjct: 94559 ctggccgccgccgtacccgc 94578



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>emb|BX649232.1| Mouse DNA sequence from clone RP23-271J11 on chromosome 2, complete
            sequence
          Length = 71295

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gtaagctgcctctgtcaagt 177
            ||||||||||||||||||||
Sbjct: 8565 gtaagctgcctctgtcaagt 8584



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>dbj|AB071333.1| Oryza sativa (japonica cultivar-group) gene for qSH-1, complete cds
          Length = 4496

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 ctggccgccgccgtacccgc 291
           ||||||||||||||||||||
Sbjct: 491 ctggccgccgccgtacccgc 472



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>dbj|AB071332.1| Oryza sativa (indica cultivar-group) gene for qSH-1, complete cds
          Length = 4486

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 ctggccgccgccgtacccgc 291
           ||||||||||||||||||||
Sbjct: 491 ctggccgccgccgtacccgc 472



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>dbj|AB071331.1| Oryza sativa (japonica cultivar-group) mRNA for qSH-1, complete cds
          Length = 2442

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 ctggccgccgccgtacccgc 291
           ||||||||||||||||||||
Sbjct: 491 ctggccgccgccgtacccgc 472



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>dbj|AB071330.1| Oryza sativa (indica cultivar-group) mRNA for qSH-1, complete cds
          Length = 2450

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 ctggccgccgccgtacccgc 291
           ||||||||||||||||||||
Sbjct: 491 ctggccgccgccgtacccgc 472


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,645,334
Number of Sequences: 3902068
Number of extensions: 3645334
Number of successful extensions: 63042
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62903
Number of HSP's gapped (non-prelim): 124
length of query: 553
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 530
effective length of database: 17,143,297,704
effective search space: 9085947783120
effective search space used: 9085947783120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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