ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20p05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TPP1_SCHPO (P78875) Trehalose-phosphatase (EC 3.1.3.12) (Trehalo... 47 4e-05
2TPS2_YEAST (P31688) Trehalose-phosphatase (EC 3.1.3.12) (Trehalo... 39 0.010
3SYC_METCA (Q60BG8) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst... 35 0.11
4TPP_ENCCU (Q8SSL0) Probable trehalose-phosphatase (EC 3.1.3.12) ... 33 0.33
5PYRG_MYCCT (Q48965) CTP synthase (EC 6.3.4.2) (UTP--ammonia liga... 31 2.2
6PAR6G_HUMAN (Q9BYG4) Partitioning defective 6 homolog gamma (PAR... 30 2.8
7CAPP_THET8 (Q5SKL7) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 30 3.7
8CAPP_THET2 (Q72L05) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 30 3.7

>TPP1_SCHPO (P78875) Trehalose-phosphatase (EC 3.1.3.12) (Trehalose 6-phosphate|
           phosphatase) (TPP)
          Length = 817

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
 Frame = -2

Query: 486 LPDFILCIGDDRSDEDMFEVITTAVDGPYLNPEAKVFACTVG--RKPSKAKYYLDDTADI 313
           LP FI C GDDR+DEDMF  +        +N E   FA T+G  +K S A + + D A++
Sbjct: 750 LPSFIFCAGDDRTDEDMFRSLH---KNTRINKETS-FAVTIGSDKKLSIADWCIADPANV 805

Query: 312 VRLIQALANVSD 277
           + ++  LAN ++
Sbjct: 806 IDILADLANFTN 817



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>TPS2_YEAST (P31688) Trehalose-phosphatase (EC 3.1.3.12) (Trehalose 6-phosphate|
           phosphatase) (TPP) (Trehalose synthase complex catalytic
           subunit TPS2)
          Length = 896

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = -2

Query: 486 LPDFILCIGDDRSDEDMFEVITT 418
           +PDF+LC+GDD +DEDMF  + T
Sbjct: 772 MPDFVLCLGDDFTDEDMFRQLNT 794



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>SYC_METCA (Q60BG8) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 465

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
 Frame = -2

Query: 495 RGLLPDFILCIGDDRSDEDMFEVITTAVDGPYLNPEAKVFACTVGRKPSKAKYYLD-DTA 319
           RGL PD  L +G+DR DE        A+   +  PEA      + R+ ++ K       A
Sbjct: 324 RGLAPDLPLPLGEDR-DEGFSSRFADAMQDDFNTPEAIAVLFDLAREINRHKAAEPAKAA 382

Query: 318 DIVRLIQALANVSDEVQGGPPSYFFACAGTS 226
            +   +++L NV   +Q  P +YF + AG S
Sbjct: 383 ALGATLKSLGNVLGLLQTDPEAYFKSDAGGS 413



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>TPP_ENCCU (Q8SSL0) Probable trehalose-phosphatase (EC 3.1.3.12) (Trehalose|
           6-phosphate phosphatase) (TPP)
          Length = 718

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -2

Query: 477 FILCIGDDRSDEDMFEVITTAVDGPYLNPEAKVFACTVGRKPSKAKYYLDDTADIVRLIQ 298
           F+LC GDD +DEDMF+V              K +   VG + + A Y + D  +   L+ 
Sbjct: 668 FVLCAGDDVADEDMFDV-------------CKGYTIKVGDQSTSAAYRVKDPENFRMLLG 714

Query: 297 AL 292
            L
Sbjct: 715 RL 716



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>PYRG_MYCCT (Q48965) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 532

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -2

Query: 504 MQARGLLPDFILCIGDDRSDEDMFEVITTAVDGPYLNPEAKVFACTVGRKP-SKAKYYLD 328
           M + G+ PD I+C  D  S +D+ E I+   + P  N    +   ++ R P + AK  L 
Sbjct: 199 MASLGIQPDVIVCRSDSSSPKDIKEKISLFCNVPITNIIDAIDQDSIYRVPLALAKQNLQ 258

Query: 327 DTADIVRLIQALANVSD 277
           D   I+  +Q  AN  D
Sbjct: 259 DI--IIEQLQLKANAID 273



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>PAR6G_HUMAN (Q9BYG4) Partitioning defective 6 homolog gamma (PAR-6 gamma)|
           (PAR6D)
          Length = 376

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
 Frame = +1

Query: 4   ESMYTTAKQQHHHDNDDRPLL-------LLILKHSTRLCEPTARSISP--RVFPEARSYS 156
           E  Y      HH  N D  +        LL + +    C+  + S +P  RVF + R  +
Sbjct: 43  EDFYKLVVHTHHISNSDVTIGYADVHGDLLPINNDDNFCKAVS-SANPLLRVFIQKREEA 101

Query: 157 GRGCAGAGLLCR 192
            RG  GAG LCR
Sbjct: 102 ERGSLGAGSLCR 113



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>CAPP_THET8 (Q5SKL7) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 858

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = -2

Query: 300 QALANVSDEVQGGPPSYFFACAGTSTDDRALN*GGKPAKKTSTSTAPA*IRPRFR 136
           +AL+ V +EV  G P YFF   GTST       GG PA +   S  P  +  R R
Sbjct: 547 EALSRVGEEV--GLPVYFFHGRGTSTAR-----GGGPAGRAIASLPPRSVGRRIR 594



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>CAPP_THET2 (Q72L05) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 858

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = -2

Query: 300 QALANVSDEVQGGPPSYFFACAGTSTDDRALN*GGKPAKKTSTSTAPA*IRPRFR 136
           +AL+ V +EV  G P YFF   GTST       GG PA +   S  P  +  R R
Sbjct: 547 EALSRVGEEV--GLPVYFFHGRGTSTAR-----GGGPAGRAIASLPPRSVGRRIR 594


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,452,137
Number of Sequences: 219361
Number of extensions: 1068467
Number of successful extensions: 3156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3154
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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