ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20m18 |
|---|---|
| Clone Library Name | barley_pub |
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from transposon 17.6| [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1058 Score = 125 bits (314), Expect = 8e-29 Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 1/172 (0%) Frame = -3 Query: 551 KVKLSKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMR 372 K++L KC F Q+ ++LGHV++ G+ P I+ + + PT K ++ LGL YY + Sbjct: 395 KLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRK 454 Query: 371 FVHNFRVIAKPLFQMLKKDVPFVWAQATH-TAFQLLKHQLVLAPILSLPNFSRSFCIKTD 195 F+ NF IAKP+ + LKK++ + +AF+ LK+ + PIL +P+F++ F + TD Sbjct: 455 FIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTD 514 Query: 194 ACHQGIGAVLQQNGHPVAFMSKVSPPRYHVISTYEKEYLAVVIAVD*WRSYL 39 A +GAVL Q+GHP++++S+ ST EKE LA+V A +R YL Sbjct: 515 ASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYL 566
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from transposon 297| [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1059 Score = 124 bits (310), Expect = 2e-28 Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 1/172 (0%) Frame = -3 Query: 551 KVKLSKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMR 372 K++L KC F ++ ++LGH+++ G+ P ++ + ++ PT K +R LGL YY + Sbjct: 394 KLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRK 453 Query: 371 FVHNFRVIAKPLFQMLKKDVPFVWAQATHT-AFQLLKHQLVLAPILSLPNFSRSFCIKTD 195 F+ N+ IAKP+ LKK + + AF+ LK ++ PIL LP+F + F + TD Sbjct: 454 FIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTD 513 Query: 194 ACHQGIGAVLQQNGHPVAFMSKVSPPRYHVISTYEKEYLAVVIAVD*WRSYL 39 A + +GAVL QNGHP++F+S+ S EKE LA+V A +R YL Sbjct: 514 ASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYL 565
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from transposon 412| [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1237 Score = 110 bits (274), Expect = 3e-24 Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 4/175 (2%) Frame = -3 Query: 551 KVKLSKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMR 372 K+ KCSF ++++LGH + +G+ + V+ N+ P RR + YY R Sbjct: 503 KLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRR 562 Query: 371 FVHNFRVIAKPLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIKTDA 192 F+ NF ++ + ++ KK+VPF W AF LK QL+ +L P+FS+ FCI TDA Sbjct: 563 FIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDA 622 Query: 191 CHQGIGAVLQQ--NGH--PVAFMSKVSPPRYHVISTYEKEYLAVVIAVD*WRSYL 39 Q GAVL Q NGH PVA+ S+ ST E+E A+ A+ +R Y+ Sbjct: 623 SKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYI 677
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III| Length = 2186 Score = 106 bits (265), Expect = 4e-23 Identities = 63/178 (35%), Positives = 94/178 (52%), Gaps = 14/178 (7%) Frame = -3 Query: 551 KVKLSKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMR 372 K++ SKC +++ YLGH ++ GV T+ + + PT +K ++ LGL YY + Sbjct: 1125 KLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRK 1184 Query: 371 FVHNFRVIAKPLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNF------SRSF 210 F+ NF IA L ++ V ++W + AFQ LK + P+L+ P+ R F Sbjct: 1185 FILNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPF 1244 Query: 209 CIKTDACHQGIGAVLQQNG-----HPVAFMSKVSPP---RYHVISTYEKEYLAVVIAV 60 I TDA +GIGAVL Q G HP+AF SK P RYH+ + E LA++ A+ Sbjct: 1245 MIYTDASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHIT---DLEALAMMFAL 1299
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from transposon opus| [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1003 Score = 101 bits (251), Expect = 2e-21 Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 15/189 (7%) Frame = -3 Query: 551 KVKLSKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMR 372 +V L K F Q+ +LG++++A G+ +P ++ ++ PT++K ++R LG+ +YY + Sbjct: 311 QVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRK 370 Query: 371 FVHNFRVIAKPLFQMLK-----------KDVPFVWAQATHTAFQLLKHQLVLAPILSLPN 225 F+ ++ +AKPL + + VP + +F LK L + IL+ P Sbjct: 371 FIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPC 430 Query: 224 FSRSFCIKTDACHQGIGAVLQQN----GHPVAFMSKVSPPRYHVISTYEKEYLAVVIAVD 57 F++ F + TDA + IGAVL Q+ P+A++S+ +T EKE LA++ ++D Sbjct: 431 FTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLD 490 Query: 56 *WRSYLQQA 30 R+YL A Sbjct: 491 NLRAYLYGA 499
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from transposon gypsy| [Includes: Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1035 Score = 99.0 bits (245), Expect = 8e-21 Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 12/183 (6%) Frame = -3 Query: 551 KVKLSKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMR 372 +V K F + + YLG ++S G ++P ++ + + P + VR LGLA+YY Sbjct: 370 RVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRV 429 Query: 371 FVHNFRVIAKPLFQMLK-----------KDVPFVWAQATHTAFQLLKHQLVLAP-ILSLP 228 F+ +F IA+P+ +LK K +P + + AFQ L++ L IL P Sbjct: 430 FIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYP 489 Query: 227 NFSRSFCIKTDACHQGIGAVLQQNGHPVAFMSKVSPPRYHVISTYEKEYLAVVIAVD*WR 48 +F + F + TDA GIGAVL Q G P+ +S+ +T E+E LA+V A+ + Sbjct: 490 DFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQ 549 Query: 47 SYL 39 ++L Sbjct: 550 NFL 552
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3| Length = 1333 Score = 94.4 bits (233), Expect = 2e-19 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 5/176 (2%) Frame = -3 Query: 548 VKLSKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRF 369 + +KC F Q+ ++G+ +S +G NI V WK P K +R+ LG Y +F Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKF 655 Query: 368 VHNFRVIAKPLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIKTDAC 189 + + PL +LKKDV + W A + +K LV P+L +FS+ ++TDA Sbjct: 656 IPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDAS 715 Query: 188 HQGIGAVLQQNG-----HPVAFMSKVSPPRYHVISTYEKEYLAVVIAVD*WRSYLQ 36 +GAVL Q +PV + S S +KE LA++ ++ WR YL+ Sbjct: 716 DVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLE 771
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2| Length = 1333 Score = 94.4 bits (233), Expect = 2e-19 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 5/176 (2%) Frame = -3 Query: 548 VKLSKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRF 369 + +KC F Q+ ++G+ +S +G NI V WK P K +R+ LG Y +F Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKF 655 Query: 368 VHNFRVIAKPLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIKTDAC 189 + + PL +LKKDV + W A + +K LV P+L +FS+ ++TDA Sbjct: 656 IPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDAS 715 Query: 188 HQGIGAVLQQNG-----HPVAFMSKVSPPRYHVISTYEKEYLAVVIAVD*WRSYLQ 36 +GAVL Q +PV + S S +KE LA++ ++ WR YL+ Sbjct: 716 DVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLE 771
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1| Length = 1333 Score = 94.4 bits (233), Expect = 2e-19 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 5/176 (2%) Frame = -3 Query: 548 VKLSKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRF 369 + +KC F Q+ ++G+ +S +G NI V WK P K +R+ LG Y +F Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKF 655 Query: 368 VHNFRVIAKPLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIKTDAC 189 + + PL +LKKDV + W A + +K LV P+L +FS+ ++TDA Sbjct: 656 IPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDAS 715 Query: 188 HQGIGAVLQQNG-----HPVAFMSKVSPPRYHVISTYEKEYLAVVIAVD*WRSYLQ 36 +GAVL Q +PV + S S +KE LA++ ++ WR YL+ Sbjct: 716 DVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLE 771
>M860_ARATH (P92523) Hypothetical mitochondrial protein AtMg00860 (ORF158)| Length = 158 Score = 85.1 bits (209), Expect = 1e-16 Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 2/111 (1%) Frame = -3 Query: 536 KCSFG*QQLSYLGH--VMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRFVH 363 KC+FG Q++YLGH ++S +GV+ +P ++ + W P +R LGL YY RFV Sbjct: 22 KCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVK 81 Query: 362 NFRVIAKPLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSF 210 N+ I +PL ++LKK+ W + AF+ LK + P+L+LP+ F Sbjct: 82 NYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPF 131
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] (Fragment) Length = 1046 Score = 76.6 bits (187), Expect = 4e-14 Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 5/138 (3%) Frame = -3 Query: 515 QLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRFVHNFRVIAKPL 336 +++YLG+++S P I+ V + P + VR LG A + ++ F +A PL Sbjct: 240 KVTYLGYILSEGKRWLTPGRIETVAHIPPPQNPREVREFLGTAGFCRLWIPGFAELAAPL 299 Query: 335 FQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIKTDACHQGI--GAVLQ 162 + + K+ PF W + +AF+ LK L+ AP L LP+ S+ F + D QGI G + Q Sbjct: 300 YALTKESAPFTWQEKHQSAFEALKEALLSAPALGLPDTSKPFTLFIDE-KQGIAKGVLTQ 358 Query: 161 QNG---HPVAFMSKVSPP 117 + G PVA++SK P Sbjct: 359 KLGPWKRPVAYLSKKLDP 376
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1189 Score = 74.3 bits (181), Expect = 2e-13 Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Frame = -3 Query: 515 QLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRFVHNFRVIAKPL 336 +++YLG+++S P I+ V P + VR LG A + ++ F +A PL Sbjct: 383 KVTYLGYILSEGKRWLTPGRIETVARIPPPRNPREVREFLGTAGFCRLWIPGFAELAAPL 442 Query: 335 FQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIKTDACHQGI--GAVLQ 162 + + K+ PF W AF+ LK L+ AP L LP+ S+ F + D QGI G + Q Sbjct: 443 YALTKESTPFTWQTEHQLAFEALKKALLSAPALGLPDTSKPFTLFLDE-RQGIAKGVLTQ 501 Query: 161 QNG---HPVAFMSKVSPP 117 + G PVA++SK P Sbjct: 502 KLGPWKRPVAYLSKKLDP 519
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1165 Score = 72.0 bits (175), Expect = 1e-12 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%) Frame = -3 Query: 551 KVKLSKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMR 372 +V K ++++YLG+++ P V PTT + VR LG A + Sbjct: 370 RVSAKKAQLCQREVTYLGYLLKEGKRWLTPARKATVMKIPVPTTPRQVREFLGTAGFCRL 429 Query: 371 FVHNFRVIAKPLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIKTDA 192 ++ F +A PL+ + K+ +PF+W + AF +K L+ AP L+LP+ ++ F + D Sbjct: 430 WIPGFASLAAPLYPLTKESIPFIWTEEHQQAFDHIKKALLSAPALALPDLTKPFTLYIDE 489 Query: 191 CHQGIGAVLQQN----GHPVAFMSKVSPP 117 VL Q PVA++SK P Sbjct: 490 RAGVARGVLTQTLGPWRRPVAYLSKKLDP 518
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1204 Score = 61.2 bits (147), Expect = 2e-09 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 6/140 (4%) Frame = -3 Query: 518 QQLSYLGHVMS-AQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRFVHNFRVIAK 342 +Q+ YLG+++ Q TE + V TP T + +R LG A + ++ F +A Sbjct: 389 KQVKYLGYLLKEGQRWLTEARK-ETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAA 447 Query: 341 PLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIKTDACHQGI--GAV 168 PL+ + K F W A+Q +K L+ AP L LP+ ++ F + D QG G + Sbjct: 448 PLYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDE-KQGYAKGVL 506 Query: 167 LQQNG---HPVAFMSKVSPP 117 Q+ G PVA++SK P Sbjct: 507 TQKLGPWRRPVAYLSKKLDP 526
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1204 Score = 61.2 bits (147), Expect = 2e-09 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 6/140 (4%) Frame = -3 Query: 518 QQLSYLGHVMS-AQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRFVHNFRVIAK 342 +Q+ YLG+++ Q TE + V TP T + +R LG A + ++ F +A Sbjct: 389 KQVKYLGYLLKEGQRWLTEARK-ETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAA 447 Query: 341 PLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIKTDACHQGI--GAV 168 PL+ + K F W A+Q +K L+ AP L LP+ ++ F + D QG G + Sbjct: 448 PLYPLTKTGTLFEWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDE-KQGYAKGVL 506 Query: 167 LQQNG---HPVAFMSKVSPP 117 Q+ G PVA++SK P Sbjct: 507 TQKLGPWRRPVAYLSKKLDP 526
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1199 Score = 60.8 bits (146), Expect = 2e-09 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 6/140 (4%) Frame = -3 Query: 518 QQLSYLGHVMS-AQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRFVHNFRVIAK 342 +Q+ YLG+++ Q TE + V TP T + +R LG A + ++ F +A Sbjct: 384 KQVKYLGYLLKEGQRWLTEARK-ETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAA 442 Query: 341 PLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIKTDACHQGI--GAV 168 PL+ + K F W A+Q +K L+ AP L LP+ ++ F + D QG G + Sbjct: 443 PLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDE-KQGYAKGVL 501 Query: 167 LQQNG---HPVAFMSKVSPP 117 Q+ G PVA++SK P Sbjct: 502 TQKLGPWRRPVAYLSKKLDP 521
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1196 Score = 60.8 bits (146), Expect = 2e-09 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 6/140 (4%) Frame = -3 Query: 518 QQLSYLGHVMS-AQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRFVHNFRVIAK 342 +Q+ YLG+++ Q TE + V TP T + +R LG A + ++ F +A Sbjct: 384 KQVKYLGYLLKEGQRWLTEARK-ETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAA 442 Query: 341 PLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIKTDACHQGI--GAV 168 PL+ + K F W A+Q +K L+ AP L LP+ ++ F + D QG G + Sbjct: 443 PLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDE-KQGYAKGVL 501 Query: 167 LQQNG---HPVAFMSKVSPP 117 Q+ G PVA++SK P Sbjct: 502 TQKLGPWRRPVAYLSKKLDP 521
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1204 Score = 59.7 bits (143), Expect = 5e-09 Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 6/140 (4%) Frame = -3 Query: 518 QQLSYLGHVMS-AQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRFVHNFRVIAK 342 +Q+ YLG+++ Q TE + V TP T + +R LG A ++ F +A Sbjct: 389 KQVKYLGYLLKEGQRWLTEARK-ETVMGQPTPKTPRQLREFLGTAGLCRLWIPGFAEMAA 447 Query: 341 PLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIKTDACHQGI--GAV 168 PL+ + K F W A+Q +K L+ AP L LP+ ++ F + D QG G + Sbjct: 448 PLYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDE-KQGYAKGVL 506 Query: 167 LQQNG---HPVAFMSKVSPP 117 Q+ G PVA++SK P Sbjct: 507 TQKLGPWRRPVAYLSKKLDP 526
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1196 Score = 58.9 bits (141), Expect = 9e-09 Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%) Frame = -3 Query: 518 QQLSYLGHVM-SAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRFVHNFRVIAK 342 +Q+ YLG+++ Q TE + V TP T + +R LG A + ++ F +A Sbjct: 384 KQVKYLGYLLREGQRWLTEARK-ETVMGQPTPKTPRQLREFLGTAGFCRLWIPRFAEMAA 442 Query: 341 PLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIKTDACHQGI--GAV 168 PL+ + K F W A+ +K L+ AP L LP+ ++ F + D QG G + Sbjct: 443 PLYPLTKTGTLFNWGPDQQKAYHEIKQALLTAPALGLPDLTKPFELFVDE-KQGYAKGVL 501 Query: 167 LQQNG---HPVAFMSKVSPP 117 Q+ G PVA++SK P Sbjct: 502 TQKLGPWRRPVAYLSKKLDP 521
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 659 Score = 45.4 bits (106), Expect = 1e-04 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 7/133 (5%) Frame = -3 Query: 416 KVVRRLLGLAAYYMRFVHNFRVIAKPLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPIL 237 K ++R LG+ Y ++ I KPL LK+D + W +K L P L Sbjct: 462 KQLQRFLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKL 521 Query: 236 SLPNFSRSFCIKTDACHQGIGAVLQ--QNGHP-----VAFMSKVSPPRYHVISTYEKEYL 78 P + I+TDA + G +L+ N H + K + YH + EKE L Sbjct: 522 YHPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYH---SNEKELL 578 Query: 77 AVVIAVD*WRSYL 39 AV+ + + YL Sbjct: 579 AVIRVIKKFSIYL 591
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 666 Score = 45.1 bits (105), Expect = 1e-04 Identities = 29/85 (34%), Positives = 40/85 (47%) Frame = -3 Query: 416 KVVRRLLGLAAYYMRFVHNFRVIAKPLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPIL 237 K ++R LG+ Y ++ I KPL LKKDV + W Q+ + +K L P L Sbjct: 471 KHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDYVKKIKKNLGSFPKL 530 Query: 236 SLPNFSRSFCIKTDACHQGIGAVLQ 162 LP I+TDA G VL+ Sbjct: 531 YLPKPEDHLIIETDASDSFWGGVLK 555
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 674 Score = 42.4 bits (98), Expect = 9e-04 Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 14/146 (9%) Frame = -3 Query: 434 KTPTTI---KVVRRLLGLAAYYMRFVHNFRVIAKPLFQMLKKDVPFVWAQATHTAFQLLK 264 K P T+ K ++R LG+ Y ++ I KPL LK++VP+ W + Q +K Sbjct: 464 KFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVK 523 Query: 263 HQLVLAPILSLPNFSRSFCIKTDACHQGIGAVLQ----QNGHPVAFMS-------KVSPP 117 L P L P I+TDA G +L+ G + K + Sbjct: 524 KNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEK 583 Query: 116 RYHVISTYEKEYLAVVIAVD*WRSYL 39 YH + +KE LAV+ + + YL Sbjct: 584 NYH---SNDKETLAVINTIKKFSIYL 606
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 679 Score = 42.0 bits (97), Expect = 0.001 Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 14/146 (9%) Frame = -3 Query: 434 KTPTTI---KVVRRLLGLAAYYMRFVHNFRVIAKPLFQMLKKDVPFVWAQATHTAFQLLK 264 K P T+ K ++R LG+ Y ++ I KPL LK++VP+ W + Q +K Sbjct: 469 KFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVK 528 Query: 263 HQLVLAPILSLPNFSRSFCIKTDACHQGIGAVLQ----QNGHPVAFMS-------KVSPP 117 L P L P I+TDA G +L+ G + K + Sbjct: 529 KNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEK 588 Query: 116 RYHVISTYEKEYLAVVIAVD*WRSYL 39 YH + +KE LAV+ + + YL Sbjct: 589 NYH---SNDKETLAVINTIKKFSIYL 611
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 679 Score = 42.0 bits (97), Expect = 0.001 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Frame = -3 Query: 434 KTPTTI---KVVRRLLGLAAYYMRFVHNFRVIAKPLFQMLKKDVPFVWAQATHTAFQLLK 264 K P T+ K ++R LG+ Y ++ I KPL LK++VP+ W + Q +K Sbjct: 469 KFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVK 528 Query: 263 HQLVLAPILSLPNFSRSFCIKTDACHQGIGAVLQ 162 L P L P I+TDA G +L+ Sbjct: 529 KNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLK 562
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 679 Score = 42.0 bits (97), Expect = 0.001 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Frame = -3 Query: 434 KTPTTI---KVVRRLLGLAAYYMRFVHNFRVIAKPLFQMLKKDVPFVWAQATHTAFQLLK 264 K P T+ K ++R LG+ Y ++ I KPL LK++VP+ W + Q +K Sbjct: 469 KFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVK 528 Query: 263 HQLVLAPILSLPNFSRSFCIKTDACHQGIGAVLQ 162 L P L P I+TDA G +L+ Sbjct: 529 KNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLK 562
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 680 Score = 41.6 bits (96), Expect = 0.002 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Frame = -3 Query: 434 KTPTTI---KVVRRLLGLAAYYMRFVHNFRVIAKPLFQMLKKDVPFVWAQATHTAFQLLK 264 K P T+ K ++R LG+ Y ++ N + +PL LK++VP+ W + Q +K Sbjct: 470 KFPDTLEDKKQLQRFLGILTYASDYIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVK 529 Query: 263 HQLVLAPILSLPNFSRSFCIKTDACHQGIGAVLQ 162 L P L P I+TDA G +L+ Sbjct: 530 KNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLK 563
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein; Protease (EC| 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 1886 Score = 39.7 bits (91), Expect = 0.006 Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 7/156 (4%) Frame = -3 Query: 539 SKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTP--TTIKVVRRLLGLAAYYMRFV 366 +K G ++ +LG + + +P+ I + ++ T + +R LG+ +Y ++ Sbjct: 1599 TKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWLGILSYARNYI 1658 Query: 365 HNFRVIAKPLFQML-----KKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIK 201 + + +PL Q + K+ P W +K ++ P L LP I+ Sbjct: 1659 QDIGKLVQPLRQKMAPTGDKRMNPETWKMVRQ-----IKEKVKNLPDLQLPPKDSFIIIE 1713 Query: 200 TDACHQGIGAVLQQNGHPVAFMSKVSPPRYHVISTY 93 TD C G GAV + MSK P I Y Sbjct: 1714 TDGCMTGWGAVCKWK------MSKHDPRSTERICAY 1743
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1157 Score = 37.4 bits (85), Expect = 0.028 Identities = 19/75 (25%), Positives = 36/75 (48%) Frame = -3 Query: 548 VKLSKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRF 369 V L K ++ +LG ++ +G Q + N P +K ++ +LGL + F Sbjct: 358 VSLKKSEIAQHEVEFLGFNITKEGRGLTETFKQKLLNITPPRDLKQLQSILGLLNFARNF 417 Query: 368 VHNFRVIAKPLFQML 324 + NF + KPL+ ++ Sbjct: 418 IPNFSELVKPLYNII 432
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1161 Score = 35.8 bits (81), Expect = 0.083 Identities = 18/75 (24%), Positives = 37/75 (49%) Frame = -3 Query: 548 VKLSKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRF 369 V L K +++ +LG ++ +G Q + N P +K ++ +LGL + F Sbjct: 356 VSLKKSEIAQREVEFLGFNITKEGRGLTDTFKQKLLNITPPKDLKQLQSILGLLNFARNF 415 Query: 368 VHNFRVIAKPLFQML 324 + N+ + KPL+ ++ Sbjct: 416 IPNYSELVKPLYTIV 430
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 886 Score = 35.4 bits (80), Expect = 0.11 Identities = 18/75 (24%), Positives = 36/75 (48%) Frame = -3 Query: 548 VKLSKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRF 369 V L K G + + +LG ++ +G + N P +K ++ +LGL + F Sbjct: 147 VSLKKSEIGQKTVEFLGFNITKEGRGLTDTFKTKLLNITPPKDLKQLQSILGLLNFARNF 206 Query: 368 VHNFRVIAKPLFQML 324 + NF + +PL+ ++ Sbjct: 207 IPNFAELVQPLYNLI 221
>POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat protein; Protease| (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 1675 Score = 34.7 bits (78), Expect = 0.18 Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Frame = -3 Query: 518 QQLSYLGHVMSAQGVATEPNNIQVVTNWKTP--TTIKVVRRLLGLAAYYMRFVHNFRVIA 345 +++ YLG + ++ +P+ + + + T+K ++ LGL Y ++ + + Sbjct: 1381 KEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLSKLV 1440 Query: 344 KPLFQMLKKDVPFVWAQATHTAFQLLKHQLVLAPILSLPNFSRSFCIKTDACHQGIGAVL 165 PL++ K+ ++ + ++ ++ L P + I+TDA +G GAVL Sbjct: 1441 GPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVL 1500
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6| Length = 1268 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/64 (26%), Positives = 31/64 (48%) Frame = -3 Query: 551 KVKLSKCSFG*QQLSYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMR 372 +V KC+F +Q+++LG V G + + + + K PT K + LG A + R Sbjct: 624 RVSAEKCAFAQKQVTFLGFV-DEHGRRPDSKKTEAIRSMKAPTDQKQLASFLGAADWLSR 682 Query: 371 FVHN 360 + + Sbjct: 683 MMQD 686
>ACPS_BACSU (P96618) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 121 Score = 31.2 bits (69), Expect = 2.0 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Frame = -3 Query: 266 KHQLVLAPILSLPNFSRSFC--IKTDACHQGIGAVLQQNGHPVAFMSKVSPPRYHVISTY 93 K++ + + FS++F I Q I QNG P +K+S HV T+ Sbjct: 46 KNEFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLSQAAVHVSITH 105 Query: 92 EKEYLAVVIAVD 57 KEY A + ++ Sbjct: 106 TKEYAAAQVVIE 117
>SL9A2_RAT (P48763) Sodium/hydrogen exchanger 2 (Na(+)/H(+) exchanger 2)| (NHE-2) (Solute carrier family 9 member 2) (H7) Length = 813 Score = 30.8 bits (68), Expect = 2.7 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = -3 Query: 401 LLG-LAAYYMRFVHNFRVIAKPLFQMLKKDVPFVWAQATH 285 LLG +AA+ RF HN RVI +PLF L + ++ A+ H Sbjct: 292 LLGFIAAFTTRFTHNIRVI-EPLFVFLYSYLSYITAEMFH 330
>RL36A_ARATH (O80929) 60S ribosomal protein L36-1| Length = 113 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/50 (30%), Positives = 28/50 (56%) Frame = -3 Query: 500 GHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAYYMRFVHNFRV 351 GHV++ + +A PN+ + T+ +T K++R + G+A Y R +V Sbjct: 17 GHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKV 66
>SL9A2_RABIT (P50482) Sodium/hydrogen exchanger 2 (Na(+)/H(+) exchanger 2)| (NHE-2) (Solute carrier family 9 member 2) Length = 809 Score = 30.0 bits (66), Expect = 4.5 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = -3 Query: 392 LAAYYMRFVHNFRVIAKPLFQMLKKDVPFVWAQATH 285 +AA+ RF HN RVI +PLF L + ++ A+ H Sbjct: 295 IAAFTTRFTHNIRVI-EPLFVFLYSYLSYITAEMFH 329
>SL9A2_HUMAN (Q9UBY0) Sodium/hydrogen exchanger 2 (Na(+)/H(+) exchanger 2)| (NHE-2) (Solute carrier family 9 member 2) Length = 812 Score = 30.0 bits (66), Expect = 4.5 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = -3 Query: 392 LAAYYMRFVHNFRVIAKPLFQMLKKDVPFVWAQATH 285 +AA+ RF HN RVI +PLF L + ++ A+ H Sbjct: 295 IAAFTTRFTHNIRVI-EPLFVFLYSYLSYITAEMFH 329
>ADT1_RABIT (O46373) ADP/ATP translocase 1 (Adenine nucleotide translocator 1)| (ANT 1) (ADP,ATP carrier protein 1) (Solute carrier family 25 member 4) (30 kDa calsequestrin-binding protein) (CSQ-binding 30 kDa protein) Length = 297 Score = 29.3 bits (64), Expect = 7.8 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = -3 Query: 509 SYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAY 381 +Y G +A+G+ +P N+ ++ +W T+ V GL +Y Sbjct: 189 AYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAV---AGLVSY 228
>ADT1_BOVIN (P02722) ADP/ATP translocase 1 (Adenine nucleotide translocator 1)| (ANT 1) (ADP,ATP carrier protein 1) (Solute carrier family 25 member 4) (ADP,ATP carrier protein, heart isoform T1) Length = 297 Score = 29.3 bits (64), Expect = 7.8 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = -3 Query: 509 SYLGHVMSAQGVATEPNNIQVVTNWKTPTTIKVVRRLLGLAAY 381 +Y G +A+G+ +P N+ ++ +W T+ V GL +Y Sbjct: 189 AYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAV---AGLVSY 228 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,850,452 Number of Sequences: 219361 Number of extensions: 1680208 Number of successful extensions: 4065 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 3956 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4052 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
