ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20j18 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR645494.2|CNS0EX18 Tetraodon nigroviridis full-length cDNA Length = 563 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Minus Query: 426 tgctccttcttgtgcttcttgtgtttct 453 |||| ||||||||||||||||||||||| Sbjct: 367 tgcttcttcttgtgcttcttgtgtttct 340
>gb|AC117734.13| Mus musculus chromosome 1, clone RP24-130L9, complete sequence Length = 167235 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 426 tgctccttcttgtgcttcttgtg 448 ||||||||||||||||||||||| Sbjct: 91032 tgctccttcttgtgcttcttgtg 91054
>gb|AC159973.2| Mus musculus chromosome 1, clone RP24-207D15, complete sequence Length = 136567 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 426 tgctccttcttgtgcttcttgtg 448 ||||||||||||||||||||||| Sbjct: 1170 tgctccttcttgtgcttcttgtg 1192
>gb|DQ099299.1| Arachis hypogaea clone Ah-530 microsatellite sequence Length = 346 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Minus Query: 433 tcttgtgcttcttgtgtttctgattttgcttctgctgtt 471 |||| |||||||| |||||||| || ||||||||||||| Sbjct: 204 tcttttgcttcttctgtttctgcttctgcttctgctgtt 166
>emb|AM236323.1| Escherichia coli genome fragment containing the pgt and pix gene clusters, strain A0 34/86 Length = 61834 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 416 gtgttgctgctgctccttcttgtgcttcttg 446 |||||||||||| |||||||| ||||||||| Sbjct: 58899 gtgttgctgctgttccttcttctgcttcttg 58929
>emb|AL663026.13| Mouse DNA sequence from clone RP23-224M19 on chromosome X, complete sequence Length = 237481 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 420 tgctgctgctccttcttgtgcttctt 445 ||||||||||||||||| |||||||| Sbjct: 179602 tgctgctgctccttcttctgcttctt 179627
>gb|AC114542.9| Mus musculus chromosome 9, clone RP23-111F9, complete sequence Length = 235924 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 445 tgtgtttctgattttgcttctg 466 |||||||||||||||||||||| Sbjct: 181396 tgtgtttctgattttgcttctg 181417
>emb|AL591983.1| Listeria monocytogenes strain EGD, complete genome segment 11/12 Length = 324050 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 182 tggtccaccttgaattcctggtaaaa 207 ||||||||||||||||||||| |||| Sbjct: 220926 tggtccaccttgaattcctgggaaaa 220951
>emb|CT025653.7| Mouse DNA sequence from clone RP23-62D21 on chromosome 9, complete sequence Length = 256470 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 445 tgtgtttctgattttgcttctg 466 |||||||||||||||||||||| Sbjct: 250261 tgtgtttctgattttgcttctg 250282
>gb|AC108432.14| Mus musculus chromosome 7, clone RP23-170D4, complete sequence Length = 183180 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 ctggaaagggttatattgagt 160 ||||||||||||||||||||| Sbjct: 34439 ctggaaagggttatattgagt 34419
>ref|XM_636878.1| Dictyostelium discoideum C3HC4 type Zn finger-containing protein (DDB0220664), partial mRNA Length = 2151 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 456 ttttgcttctgctgttggattttttgctcctgc 488 ||||||| ||||||||| | ||||||||||||| Sbjct: 455 ttttgctcctgctgttgtagtttttgctcctgc 423
>ref|NM_031288.2| Homo sapiens zinc finger, HIT type 4 (ZNHIT4), mRNA Length = 1217 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtgcttcttgtgttt 451 ||||||||||||||||||||| Sbjct: 180 cttcttgtgcttcttgtgttt 160
>gb|AC157379.7| Mus musculus chromosome 3, clone RP23-20F10, complete sequence Length = 183455 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 ttcttgtgcttcttgtgtttc 452 ||||||||||||||||||||| Sbjct: 46774 ttcttgtgcttcttgtgtttc 46754
>gb|BC064425.1| Homo sapiens zinc finger, HIT type 4, mRNA (cDNA clone MGC:70669 IMAGE:5760624), complete cds Length = 1182 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtgcttcttgtgttt 451 ||||||||||||||||||||| Sbjct: 136 cttcttgtgcttcttgtgttt 116
>gb|BC050666.2| Homo sapiens zinc finger, HIT type 4, mRNA (cDNA clone MGC:60188 IMAGE:6527060), complete cds Length = 1164 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtgcttcttgtgttt 451 ||||||||||||||||||||| Sbjct: 131 cttcttgtgcttcttgtgttt 111
>gb|BC039617.1| Homo sapiens zinc finger, HIT type 4, mRNA (cDNA clone IMAGE:5770045) Length = 982 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtgcttcttgtgttt 451 ||||||||||||||||||||| Sbjct: 146 cttcttgtgcttcttgtgttt 126
>gb|AC157790.10| Mus musculus chromosome 7, clone RP24-151M10, complete sequence Length = 167728 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 ctggaaagggttatattgagt 160 ||||||||||||||||||||| Sbjct: 13268 ctggaaagggttatattgagt 13288
>ref|XM_785554.1| PREDICTED: Strongylocentrotus purpuratus similar to PAP-1 binding protein (LOC585740), mRNA Length = 1962 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtgcttcttgtgttt 451 ||||||||||||||||||||| Sbjct: 78 cttcttgtgcttcttgtgttt 58
>emb|CR625948.1| full-length cDNA clone CS0CAP002YH01 of Thymus of Homo sapiens (human) Length = 1069 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtgcttcttgtgttt 451 ||||||||||||||||||||| Sbjct: 150 cttcttgtgcttcttgtgttt 130
>emb|CR613137.1| full-length cDNA clone CS0DL003YN10 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1668 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtgcttcttgtgttt 451 ||||||||||||||||||||| Sbjct: 152 cttcttgtgcttcttgtgttt 132
>emb|CR600070.1| full-length cDNA clone CS0DF034YL10 of Fetal brain of Homo sapiens (human) Length = 1014 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtgcttcttgtgttt 451 ||||||||||||||||||||| Sbjct: 145 cttcttgtgcttcttgtgttt 125
>dbj|AK055333.1| Homo sapiens cDNA FLJ30771 fis, clone FEBRA2000740 Length = 2042 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtgcttcttgtgttt 451 ||||||||||||||||||||| Sbjct: 166 cttcttgtgcttcttgtgttt 146
>dbj|AB188249.1| Oryza sativa (japonica cultivar-group) ORK1 gene for SERK family receptor-like protein kinase, partial cds Length = 5675 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 cataacacaaaaaaggaaatg 30 ||||||||||||||||||||| Sbjct: 821 cataacacaaaaaaggaaatg 801
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 cataacacaaaaaaggaaatg 30 ||||||||||||||||||||| Sbjct: 4437712 cataacacaaaaaaggaaatg 4437692
>gb|AC079121.5| Homo sapiens BAC clone RP11-368O9 from 2, complete sequence Length = 79228 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 453 tgattttgcttctgctgttgg 473 ||||||||||||||||||||| Sbjct: 49550 tgattttgcttctgctgttgg 49530
>gb|AC005041.2|AC005041 Homo sapiens BAC clone RP11-523H20 from Ch2, complete sequence Length = 191356 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 431 cttcttgtgcttcttgtgttt 451 ||||||||||||||||||||| Sbjct: 79817 cttcttgtgcttcttgtgttt 79837
>dbj|AB054538.1| Homo sapiens mRNA for PAPA-1, complete cds Length = 1164 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 cttcttgtgcttcttgtgttt 451 ||||||||||||||||||||| Sbjct: 133 cttcttgtgcttcttgtgttt 113
>dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1134_B10 Length = 115074 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 cataacacaaaaaaggaaatg 30 ||||||||||||||||||||| Sbjct: 84888 cataacacaaaaaaggaaatg 84868
>dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0583B06 Length = 134442 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 cataacacaaaaaaggaaatg 30 ||||||||||||||||||||| Sbjct: 3602 cataacacaaaaaaggaaatg 3582
>emb|AJ970563.1| Candidatus Phytoplasma solani partial ORF and glyA pseudogene, clone SDH0040 Length = 700 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 183 ggtccaccttgaattcctggtaaaa 207 |||||||||||||||||||| |||| Sbjct: 500 ggtccaccttgaattcctggaaaaa 476
>emb|AJ871638.1| Bacillus mycoides pDx14.2 plasmid Length = 14218 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 447 tgtttctgattttgcttctgc 467 ||||||||||||||||||||| Sbjct: 8776 tgtttctgattttgcttctgc 8756
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 ctgattttgcttctgctgttg 472 ||||||||||||||||||||| Sbjct: 2089027 ctgattttgcttctgctgttg 2089047
>gb|L22982.1|PFAB Plasmodium chabaudi chabaudi merozoite surface protein-1 gene, complete cds Length = 5301 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 420 tgctgctgctccttcttgtgcttcttgtg 448 ||||| ||||||||||||||||| ||||| Sbjct: 3051 tgctgatgctccttcttgtgctttttgtg 3023
>gb|AC133465.12| Mus musculus chromosome 1, clone RP24-469B15, complete sequence Length = 166435 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 tgttgctgctgctccttctt 436 |||||||||||||||||||| Sbjct: 41880 tgttgctgctgctccttctt 41899
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ttgataagctactgaagtaa 93 |||||||||||||||||||| Sbjct: 3280001 ttgataagctactgaagtaa 3280020
>gb|AC150577.4| Bos taurus BAC CH240-268P24 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 167618 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cttgaattcctggtaaaaat 209 |||||||||||||||||||| Sbjct: 27410 cttgaattcctggtaaaaat 27391
>ref|XM_960065.1| Neurospora crassa OR74A hypothetical protein (NCU00965.1) partial mRNA Length = 738 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 tgttgctgctgctccttctt 436 |||||||||||||||||||| Sbjct: 558 tgttgctgctgctccttctt 577
>ref|XM_325144.1| Neurospora crassa OR74A hypothetical protein (NCU00965.1) partial mRNA Length = 738 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 tgttgctgctgctccttctt 436 |||||||||||||||||||| Sbjct: 558 tgttgctgctgctccttctt 577
>gb|AY189772.1| Branta leucopsis AD012Z gene, intron 2 Length = 860 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 59 tgagttgtagtttacttgataagctact 86 ||||||||||||| |||||||| ||||| Sbjct: 463 tgagttgtagtttgcttgataacctact 490
>gb|AY591007.1| Zea mays cultivar k76 alcohol dehydrogenase 1 (adh1) gene, partial sequence Length = 527 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ccaatgggaccaatctgtgc 268 |||||||||||||||||||| Sbjct: 24 ccaatgggaccaatctgtgc 43
>gb|AY596975.1| Centaurium erythraea clone 1 cytochrome P450 mRNA, complete cds Length = 1506 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 cacaaaaaaggaaatggcag 34 |||||||||||||||||||| Sbjct: 766 cacaaaaaaggaaatggcag 785
>gb|AY280679.1| Efflatouniella aegyptiaca CAD (r) gene, partial cds Length = 3989 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 ttgcttctgctgttggattt 477 |||||||||||||||||||| Sbjct: 638 ttgcttctgctgttggattt 657
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 cacatggccgtggctggttc 353 |||||||||||||||||||| Sbjct: 27703542 cacatggccgtggctggttc 27703561
>gb|AC024826.1| Caenorhabditis elegans cosmid Y55F3AM, complete sequence Length = 107705 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 450 ttctgattttgcttctgctgttgg 473 ||||||||||| |||||||||||| Sbjct: 80799 ttctgattttgattctgctgttgg 80822
>gb|AC124739.2| Mus musculus BAC clone RP23-344H4 from chromosome 12, complete sequence Length = 224632 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cttgaattcctggtaaaaat 209 |||||||||||||||||||| Sbjct: 131049 cttgaattcctggtaaaaat 131030
>gb|AC130467.2| Homo sapiens chromosome 16 clone CTD-2015G9, complete sequence Length = 117601 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tgcttctgctgttggatttt 478 |||||||||||||||||||| Sbjct: 116699 tgcttctgctgttggatttt 116718
>gb|AC137948.12| Mus musculus chromosome 1, clone RP23-393D20, complete sequence Length = 233077 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ctggtaaaaatggtagagga 218 |||||||||||||||||||| Sbjct: 195455 ctggtaaaaatggtagagga 195474
>gb|AC122817.3| Mus musculus BAC clone RP23-241M6 from 16, complete sequence Length = 185702 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 365 tttcccttccagctttctttgttt 388 |||||||| ||||||||||||||| Sbjct: 152273 tttcccttacagctttctttgttt 152296
>gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, complete sequence Length = 240406 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 cttcttgtgtttctgatttt 459 |||||||||||||||||||| Sbjct: 70694 cttcttgtgtttctgatttt 70675
>gb|AC144477.16| Medicago truncatula clone mth2-6k4, complete sequence Length = 112241 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 tggattttttgctcctgcct 490 |||||||||||||||||||| Sbjct: 61826 tggattttttgctcctgcct 61807
>emb|AL772262.4| Human DNA sequence from clone RP11-444C24 on chromosome X, complete sequence Length = 147079 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 tgattttgcttctgctgttg 472 |||||||||||||||||||| Sbjct: 75509 tgattttgcttctgctgttg 75528
>emb|AL606970.12| Human DNA sequence from clone RP11-503C24 on chromosome 6 Contains the 3' end of a novel gene, up to five novel genes, (inclusing FLJ31232 and pp13671), a meningioma expressed antigen 6 (coiled-coil proline-rich) (MGEA6) pseudogene and three CpG islands, complete sequence Length = 161863 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 ctgctgttggattttttgct 483 |||||||||||||||||||| Sbjct: 87282 ctgctgttggattttttgct 87263
>emb|AL592148.7| Human DNA sequence from clone RP11-378J18 on chromosome 1 Contains the gene for a novel protein (FLJ13840), the TAF1A gene for TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa, two novel genes, the gene for C219-reactive peptide (FLJ39207), the 3' of the gene for a novel protein (FLJ12806) and a CpG island, complete sequence Length = 194034 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 ataacacaaaaaaggaaatggcag 34 |||| ||||||||||||||||||| Sbjct: 186510 ataagacaaaaaaggaaatggcag 186487
>emb|AL357137.7| Human DNA sequence from clone RP11-12L8 on chromosome 1 Contains a novel gene, the 5' end of the SLC22A15 gene for solute carrier family 22 (organic cation transporter), member 15 and a CpG island, complete sequence Length = 100367 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 455 attttgcttctgctgttggatttt 478 |||||||||||||| ||||||||| Sbjct: 47026 attttgcttctgcttttggatttt 47003
>emb|AL355498.10| Human DNA sequence from clone RP11-112L15 on chromosome 6 Contains a heparan sulfate (glucosamine) 3-O-sulfotransferase 1 (HS3ST1) pseudogene, a putative novel gene, a laminin receptor 1 (LAMR1) pseudogene and two putative novel genes, complete sequence Length = 165549 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ttgaattcctggtaaaaatg 210 |||||||||||||||||||| Sbjct: 86822 ttgaattcctggtaaaaatg 86803
>emb|AL354898.10| Human DNA sequence from clone RP11-618A20 on chromosome 9 Contains a novel gene (DKFZp434P0216), the ASS gene for argininosuccinate synthetase (ASS1,CTLN1) and three CpG islands, complete sequence Length = 173023 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 420 tgctgctgctccttcttgtgcttc 443 |||||||||| ||||||||||||| Sbjct: 26684 tgctgctgcttcttcttgtgcttc 26707
>emb|AL136529.14| Human DNA sequence from clone RP4-797K12 on chromosome 1p35-36.2 Contains the 3' end of a novel gene and the gene for a novel actin like protein (LOC81569), complete sequence Length = 154028 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 aaacgcataacacaaaaaag 24 |||||||||||||||||||| Sbjct: 34736 aaacgcataacacaaaaaag 34717
>emb|AL035413.19|HS657E11 Human DNA sequence from clone RP4-657E11 on chromosome 1p35.1-36.23 Contains the 5' end of a novel gene, the C1orf33 gene for chromosome 1 open reading frame 33, four novel genes, the AKR7A3 gene for aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase), the AKR7A2 gene for aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase), the 3' end of the CAPZB gene for capping protein (actin filament) muscle Z-line, beta and two CpG islands, complete sequence Length = 154130 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 ctcgtgttgctgctgctcct 432 |||||||||||||||||||| Sbjct: 38875 ctcgtgttgctgctgctcct 38894
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ttgataagctactgaagtaa 93 |||||||||||||||||||| Sbjct: 3214618 ttgataagctactgaagtaa 3214637
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ttgataagctactgaagtaa 93 |||||||||||||||||||| Sbjct: 3379771 ttgataagctactgaagtaa 3379790
>emb|BX842629.1| Neurospora crassa DNA linkage group I BAC contig B20J13 Length = 126048 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 tgttgctgctgctccttctt 436 |||||||||||||||||||| Sbjct: 56450 tgttgctgctgctccttctt 56431
>emb|AJ720122.1| Gallus gallus mRNA for hypothetical protein, clone 11a18 Length = 2189 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 cttgtgcttcttgtgtttct 453 |||||||||||||||||||| Sbjct: 112 cttgtgcttcttgtgtttct 93
>emb|AJ417718.1|ADU417718 Ancylostoma duodenale complete mitochondrial genome Length = 13721 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 448 gtttctgattttgcttctgctgttggattttt 479 |||||||||||||||||| |||| ||||||| Sbjct: 11636 gtttctgattttgcttcttttgttagattttt 11667
>emb|AL606488.15| Mouse DNA sequence from clone RP23-90E8 on chromosome 13 Contains part of a novel gene, complete sequence Length = 188423 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 410 ttcctcgtgttgctgctgctccttcttgtgct 441 |||||| || ||||||||||||||||| |||| Sbjct: 134946 ttcctcctgctgctgctgctccttcttttgct 134977
>ref|NM_001005839.1| Gallus gallus bromodomain containing 7 (BRD7), mRNA Length = 2189 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 cttgtgcttcttgtgtttct 453 |||||||||||||||||||| Sbjct: 112 cttgtgcttcttgtgtttct 93
>gb|AE012255.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 163 of 460 of the complete genome Length = 12201 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 agcatttgctgcaactggtc 186 |||||||||||||||||||| Sbjct: 3519 agcatttgctgcaactggtc 3538
>gb|AC079328.11| Homo sapiens chromosome 15, clone RP11-244F12, complete sequence Length = 179402 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 431 cttcttgtgcttcttgtgtttctgattt 458 ||||||||||||||| | |||||||||| Sbjct: 42715 cttcttgtgcttcttttctttctgattt 42688
>gb|AC158390.2| Mus musculus BAC clone RP24-401O3 from chromosome 14, complete sequence Length = 121889 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 tttgtttcccctgcacttgg 401 |||||||||||||||||||| Sbjct: 61426 tttgtttcccctgcacttgg 61445
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 agcatttgctgcaactggtc 186 |||||||||||||||||||| Sbjct: 3239870 agcatttgctgcaactggtc 3239851
>dbj|AK079507.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130084P12 product:unclassifiable, full insert sequence Length = 1139 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ctttctttgtttcccctgca 396 |||||||||||||||||||| Sbjct: 192 ctttctttgtttcccctgca 211
>ref|NM_067632.1| Caenorhabditis elegans Y55F3AM.14 (Y55F3AM.14) mRNA, complete cds Length = 1989 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 450 ttctgattttgcttctgctgttgg 473 ||||||||||| |||||||||||| Sbjct: 1391 ttctgattttgattctgctgttgg 1368
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aattctttacaaatcctatg 56 |||||||||||||||||||| Sbjct: 14618441 aattctttacaaatcctatg 14618422
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 cacatggccgtggctggttc 353 |||||||||||||||||||| Sbjct: 27794865 cacatggccgtggctggttc 27794884
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 cacatggccgtggctggttc 353 |||||||||||||||||||| Sbjct: 110352 cacatggccgtggctggttc 110333
>gb|AC124817.2| Branchiostoma floridae, clone -10F3, complete sequence Length = 133980 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cttgaattcctggtaaaaat 209 |||||||||||||||||||| Sbjct: 130138 cttgaattcctggtaaaaat 130119
>gb|AC026888.6|AC026888 Homo sapiens chromosome 14 clone CTD-2243E23 and CTD-2009K21 map 14q24.3-31, complete sequence Length = 208894 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 428 ctccttcttgtgcttcttgtgttt 451 |||||||||| ||||||||||||| Sbjct: 159147 ctccttcttgagcttcttgtgttt 159170
>dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0643D11 Length = 137525 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aattctttacaaatcctatg 56 |||||||||||||||||||| Sbjct: 40108 aattctttacaaatcctatg 40089
>dbj|AK000327.1| Homo sapiens cDNA FLJ20320 fis, clone HEP08923 Length = 2662 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 ctcgtgttgctgctgctcct 432 |||||||||||||||||||| Sbjct: 1615 ctcgtgttgctgctgctcct 1596
>gb|AC124095.7| Mus musculus chromosome 1, clone RP23-245G9, complete sequence Length = 198825 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ctggtaaaaatggtagagga 218 |||||||||||||||||||| Sbjct: 48846 ctggtaaaaatggtagagga 48865
>gb|U44903.1|MMU44903 Mus musculus GTP binding protein (IRG-47) gene, 5' flanking sequence, promoter, and exon 1 Length = 1000 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ctttctttgtttcccctgca 396 |||||||||||||||||||| Sbjct: 797 ctttctttgtttcccctgca 778
>gb|AC140454.4| Mus musculus BAC clone RP24-163I14 from 1, complete sequence Length = 171533 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 cacaaaaaaggaaatggcaggcaa 38 |||||||||||||||| ||||||| Sbjct: 47607 cacaaaaaaggaaatgccaggcaa 47630
>emb|CR848742.8| Zebrafish DNA sequence from clone DKEY-181C1 in linkage group 16, complete sequence Length = 177769 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tataaaggattttgctggaaaggg 149 ||||||||||||| |||||||||| Sbjct: 109038 tataaaggatttttctggaaaggg 109015
>emb|CT025159.8| Mouse DNA sequence from clone RP23-336K1 on chromosome 14, complete sequence Length = 198530 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 tttgtttcccctgcacttgg 401 |||||||||||||||||||| Sbjct: 72610 tttgtttcccctgcacttgg 72591
>emb|AL773567.16| Mouse DNA sequence from clone RP23-204P1 on chromosome 4, complete sequence Length = 189970 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 cctgcacttggccatcttgt 410 |||||||||||||||||||| Sbjct: 21030 cctgcacttggccatcttgt 21049
>emb|AJ002011.1|MMAJ2011 Mus musculus DNA for B1-like element (MMS10J) Length = 628 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ctggtaaaaatggtagagga 218 |||||||||||||||||||| Sbjct: 15 ctggtaaaaatggtagagga 34
>emb|AL645688.12| Mouse DNA sequence from clone RP23-54N20 on chromosome 11, complete sequence Length = 123115 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ctttctttgtttcccctgca 396 |||||||||||||||||||| Sbjct: 58742 ctttctttgtttcccctgca 58723 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,362,363 Number of Sequences: 3902068 Number of extensions: 6362363 Number of successful extensions: 131652 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 131200 Number of HSP's gapped (non-prelim): 452 length of query: 549 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 526 effective length of database: 17,143,297,704 effective search space: 9017374592304 effective search space used: 9017374592304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
