ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20i23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7 39 0.004
2OTC_ASPNG (P11066) Ornithine carbamoyltransferase, mitochondrial... 28 9.2
3COA2_HUMAN (O00763) Acetyl-CoA carboxylase 2 (EC 6.4.1.2) (ACC-b... 28 9.2

>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7|
          Length = 542

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
 Frame = -3

Query: 206 GSRPSSADRVWQ-----AKPGPKQSVRLPS---AIICCSGFAQSHRCGNKCTEEEVFDGS 51
           G    +   +W+      KPGP +  + PS   A+  C   AQ    G++C E EV+D S
Sbjct: 312 GHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYGHECPEREVYDPS 371

Query: 50  LVKVFTCF 27
            V  F C+
Sbjct: 372 PVSPFICY 379



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>OTC_ASPNG (P11066) Ornithine carbamoyltransferase, mitochondrial precursor|
           (EC 2.1.3.3) (OTCase) (Ornithine transcarbamylase)
          Length = 370

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -2

Query: 216 RVLRQPTILRR--SSLASEAGAEAVSPFAKRHYL 121
           R    P  LRR  SS +  A   A SPFA RH L
Sbjct: 14  RAFHNPPALRRLYSSTSHSAATPATSPFAPRHLL 47



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>COA2_HUMAN (O00763) Acetyl-CoA carboxylase 2 (EC 6.4.1.2) (ACC-beta)|
           [Includes: Biotin carboxylase (EC 6.3.4.14)]
          Length = 2483

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 324 LSMKLWKCLTFSFSRVTGSITSSSPVSTHRS 416
           LS  ++ CLTFS+ ++   +T S P++  +S
Sbjct: 7   LSCLIFSCLTFSWLKIWEKMTDSKPITKSKS 37


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,590,281
Number of Sequences: 219361
Number of extensions: 871737
Number of successful extensions: 2910
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2910
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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