ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Y14202.1|HVY14202 Hordeum vulgare mRNA for hypothetical prot... 90 1e-15
2gb|AF079526.1|AF079526 Triticum aestivum secretory protein (WAS-... 88 6e-15
3gb|AY108161.1| Zea mays PCO128916 mRNA sequence 62 3e-07
4ref|NM_197123.1| Oryza sativa (japonica cultivar-group) putative... 40 1.2
5ref|NM_197125.1| Oryza sativa (japonica cultivar-group) putative... 40 1.2
6gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 geno... 40 1.2
7gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 1.2
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.2
9dbj|AK100816.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.2
10dbj|AK059607.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.2
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 1.2
12gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 38 4.8
13gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 38 4.8
14gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 38 4.8
15gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 38 4.8
16gb|AC155952.2| Xenopus tropicalis clone CH216-120G20, complete s... 38 4.8

>emb|Y14202.1|HVY14202 Hordeum vulgare mRNA for hypothetical protein, clone pBH6-17
          Length = 859

 Score = 89.7 bits (45), Expect = 1e-15
 Identities = 65/72 (90%)
 Strand = Plus / Minus

                                                                       
Query: 36  attcaggctccnaacttggatttgtagtcccgccacagctgctgcacgttcttgccgaga 95
           |||||| |||| ||||||| ||||||||||  |||||||||||| |||||||| ||||||
Sbjct: 720 attcagcctccgaacttggctttgtagtccttccacagctgctggacgttcttcccgaga 661

                       
Query: 96  atctgcgcgaag 107
           ||||||||||||
Sbjct: 660 atctgcgcgaag 649



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>gb|AF079526.1|AF079526 Triticum aestivum secretory protein (WAS-2) mRNA, complete cds
          Length = 894

 Score = 87.7 bits (44), Expect = 6e-15
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                       
Query: 48  aacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgcgaag 107
           ||||||| ||||||||||  ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 705 aacttggctttgtagtccttccacagctgctgcacgttcttcccgagaatctgcgcgaag 646



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>gb|AY108161.1| Zea mays PCO128916 mRNA sequence
          Length = 648

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                              
Query: 57  ttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgcgaag 107
           ||||||||| ||||||||||||||||| ||||||| || ||||| ||||||
Sbjct: 353 ttgtagtcctgccacagctgctgcacggtcttgcccaggatctgggcgaag 303



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>ref|NM_197123.1| Oryza sativa (japonica cultivar-group) putative secretory protein
           (OSJNBa0051D19.13), mRNA
          Length = 702

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 57  ttgtagtcccgccacagctgctgcacgttctt 88
           ||||| ||| ||||||||||||||||| ||||
Sbjct: 683 ttgtaatcctgccacagctgctgcacggtctt 652



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>ref|NM_197125.1| Oryza sativa (japonica cultivar-group) putative basic secretory
           protein (OSJNBa0051D19.25), mRNA
          Length = 690

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 57  ttgtagtcccgccacagctgctgcacgttctt 88
           ||||| ||| ||||||||||||||||| ||||
Sbjct: 671 ttgtaatcctgccacagctgctgcacggtctt 640



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>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete
             sequence
          Length = 131984

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 57    ttgtagtcccgccacagctgctgcacgttctt 88
             ||||| ||| ||||||||||||||||| ||||
Sbjct: 92853 ttgtaatcctgccacagctgctgcacggtctt 92822



 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 57    ttgtagtcccgccacagctgctgcacgttctt 88
             ||||| ||| ||||||||||||||||| ||||
Sbjct: 86592 ttgtaatcctgccacagctgctgcacggtctt 86623



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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      tcttgccgagaatctgcgcg 104
               ||||||||||||||||||||
Sbjct: 3357779 tcttgccgagaatctgcgcg 3357760



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 57       ttgtagtcccgccacagctgctgcacgttctt 88
                ||||| ||| ||||||||||||||||| ||||
Sbjct: 18126536 ttgtaatcctgccacagctgctgcacggtctt 18126505



 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 57       ttgtagtcccgccacagctgctgcacgttctt 88
                ||||| ||| ||||||||||||||||| ||||
Sbjct: 18120275 ttgtaatcctgccacagctgctgcacggtctt 18120306



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>dbj|AK100816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122C23, full
           insert sequence
          Length = 856

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 57  ttgtagtcccgccacagctgctgcacgttctt 88
           ||||| ||| ||||||||||||||||| ||||
Sbjct: 691 ttgtaatcctgccacagctgctgcacggtctt 660



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>dbj|AK059607.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F02, full
           insert sequence
          Length = 852

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 57  ttgtagtcccgccacagctgctgcacgttctt 88
           ||||| ||| ||||||||||||||||| ||||
Sbjct: 687 ttgtaatcctgccacagctgctgcacggtctt 656



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 57       ttgtagtcccgccacagctgctgcacgttctt 88
                ||||| ||| ||||||||||||||||| ||||
Sbjct: 18135789 ttgtaatcctgccacagctgctgcacggtctt 18135758



 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 57       ttgtagtcccgccacagctgctgcacgttctt 88
                ||||| ||| ||||||||||||||||| ||||
Sbjct: 18129528 ttgtaatcctgccacagctgctgcacggtctt 18129559



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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 71     cagctgctgcacgttcttgccga 93
              |||||||| ||||||||||||||
Sbjct: 395948 cagctgctccacgttcttgccga 395926



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>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 67     gccacagctgctgcacgtt 85
              |||||||||||||||||||
Sbjct: 301876 gccacagctgctgcacgtt 301894



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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 87      ttgccgagaatctgcgcga 105
               |||||||||||||||||||
Sbjct: 1055307 ttgccgagaatctgcgcga 1055289



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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 79      gcacgttcttgccgagaatctgc 101
               |||||||||||||||| ||||||
Sbjct: 2778789 gcacgttcttgccgaggatctgc 2778811



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>gb|AC155952.2| Xenopus tropicalis clone CH216-120G20, complete sequence
          Length = 169117

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 50     cttggatttgtagtcccgccacagctg 76
              |||||||||||||||| || |||||||
Sbjct: 139146 cttggatttgtagtccagcaacagctg 139120


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 504,958
Number of Sequences: 3902068
Number of extensions: 504958
Number of successful extensions: 31854
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31704
Number of HSP's gapped (non-prelim): 150
length of query: 107
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 86
effective length of database: 17,151,101,840
effective search space: 1474994758240
effective search space used: 1474994758240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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