| Clone Name | rbasd20g01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y14202.1|HVY14202 Hordeum vulgare mRNA for hypothetical protein, clone pBH6-17 Length = 859 Score = 89.7 bits (45), Expect = 1e-15 Identities = 65/72 (90%) Strand = Plus / Minus Query: 36 attcaggctccnaacttggatttgtagtcccgccacagctgctgcacgttcttgccgaga 95 |||||| |||| ||||||| |||||||||| |||||||||||| |||||||| |||||| Sbjct: 720 attcagcctccgaacttggctttgtagtccttccacagctgctggacgttcttcccgaga 661 Query: 96 atctgcgcgaag 107 |||||||||||| Sbjct: 660 atctgcgcgaag 649
>gb|AF079526.1|AF079526 Triticum aestivum secretory protein (WAS-2) mRNA, complete cds Length = 894 Score = 87.7 bits (44), Expect = 6e-15 Identities = 56/60 (93%) Strand = Plus / Minus Query: 48 aacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgcgaag 107 ||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct: 705 aacttggctttgtagtccttccacagctgctgcacgttcttcccgagaatctgcgcgaag 646
>gb|AY108161.1| Zea mays PCO128916 mRNA sequence Length = 648 Score = 61.9 bits (31), Expect = 3e-07 Identities = 46/51 (90%) Strand = Plus / Minus Query: 57 ttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgcgaag 107 ||||||||| ||||||||||||||||| ||||||| || ||||| |||||| Sbjct: 353 ttgtagtcctgccacagctgctgcacggtcttgcccaggatctgggcgaag 303
>ref|NM_197123.1| Oryza sativa (japonica cultivar-group) putative secretory protein (OSJNBa0051D19.13), mRNA Length = 702 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 57 ttgtagtcccgccacagctgctgcacgttctt 88 ||||| ||| ||||||||||||||||| |||| Sbjct: 683 ttgtaatcctgccacagctgctgcacggtctt 652
>ref|NM_197125.1| Oryza sativa (japonica cultivar-group) putative basic secretory protein (OSJNBa0051D19.25), mRNA Length = 690 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 57 ttgtagtcccgccacagctgctgcacgttctt 88 ||||| ||| ||||||||||||||||| |||| Sbjct: 671 ttgtaatcctgccacagctgctgcacggtctt 640
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence Length = 131984 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 57 ttgtagtcccgccacagctgctgcacgttctt 88 ||||| ||| ||||||||||||||||| |||| Sbjct: 92853 ttgtaatcctgccacagctgctgcacggtctt 92822 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 57 ttgtagtcccgccacagctgctgcacgttctt 88 ||||| ||| ||||||||||||||||| |||| Sbjct: 86592 ttgtaatcctgccacagctgctgcacggtctt 86623
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tcttgccgagaatctgcgcg 104 |||||||||||||||||||| Sbjct: 3357779 tcttgccgagaatctgcgcg 3357760
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 57 ttgtagtcccgccacagctgctgcacgttctt 88 ||||| ||| ||||||||||||||||| |||| Sbjct: 18126536 ttgtaatcctgccacagctgctgcacggtctt 18126505 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 57 ttgtagtcccgccacagctgctgcacgttctt 88 ||||| ||| ||||||||||||||||| |||| Sbjct: 18120275 ttgtaatcctgccacagctgctgcacggtctt 18120306
>dbj|AK100816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122C23, full insert sequence Length = 856 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 57 ttgtagtcccgccacagctgctgcacgttctt 88 ||||| ||| ||||||||||||||||| |||| Sbjct: 691 ttgtaatcctgccacagctgctgcacggtctt 660
>dbj|AK059607.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F02, full insert sequence Length = 852 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 57 ttgtagtcccgccacagctgctgcacgttctt 88 ||||| ||| ||||||||||||||||| |||| Sbjct: 687 ttgtaatcctgccacagctgctgcacggtctt 656
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 57 ttgtagtcccgccacagctgctgcacgttctt 88 ||||| ||| ||||||||||||||||| |||| Sbjct: 18135789 ttgtaatcctgccacagctgctgcacggtctt 18135758 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 57 ttgtagtcccgccacagctgctgcacgttctt 88 ||||| ||| ||||||||||||||||| |||| Sbjct: 18129528 ttgtaatcctgccacagctgctgcacggtctt 18129559
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 38.2 bits (19), Expect = 4.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 71 cagctgctgcacgttcttgccga 93 |||||||| |||||||||||||| Sbjct: 395948 cagctgctccacgttcttgccga 395926
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 67 gccacagctgctgcacgtt 85 ||||||||||||||||||| Sbjct: 301876 gccacagctgctgcacgtt 301894
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 ttgccgagaatctgcgcga 105 ||||||||||||||||||| Sbjct: 1055307 ttgccgagaatctgcgcga 1055289
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 38.2 bits (19), Expect = 4.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 79 gcacgttcttgccgagaatctgc 101 |||||||||||||||| |||||| Sbjct: 2778789 gcacgttcttgccgaggatctgc 2778811
>gb|AC155952.2| Xenopus tropicalis clone CH216-120G20, complete sequence Length = 169117 Score = 38.2 bits (19), Expect = 4.8 Identities = 25/27 (92%) Strand = Plus / Minus Query: 50 cttggatttgtagtcccgccacagctg 76 |||||||||||||||| || ||||||| Sbjct: 139146 cttggatttgtagtccagcaacagctg 139120 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 504,958 Number of Sequences: 3902068 Number of extensions: 504958 Number of successful extensions: 31854 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31704 Number of HSP's gapped (non-prelim): 150 length of query: 107 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 86 effective length of database: 17,151,101,840 effective search space: 1474994758240 effective search space used: 1474994758240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)