| Clone Name | rbasd20e13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002N22, full insert sequence Length = 1157 Score = 315 bits (159), Expect = 9e-83 Identities = 421/508 (82%), Gaps = 1/508 (0%) Strand = Plus / Minus Query: 70 actaaacaggcacatcanccggatactctgcagggtgccttttgatggtatccagcagcg 129 |||||| | |||||||| | || || |||||||||||| | ||||| |||||| |||| Sbjct: 968 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 909 Query: 130 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 189 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 908 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 849 Query: 190 naagcccgtgntttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 249 ||| | || ||||| || || |||||||||||||||| ||| ||||||||||||| Sbjct: 848 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 789 Query: 250 cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 309 ||||||||||||||| ||| || | | | |||||||| ||||||||||||||||||| Sbjct: 788 cattgttcctgagttcagattcatcttcatcacaccaccagccattcccctgaacccatt 729 Query: 310 ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 369 ||||||||||||| | ||||| | ||||||||||| ||||| |||||||| |||||| Sbjct: 728 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 669 Query: 370 tgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcga 429 |||| ||||||||||| ||||||||||||||||||||||| ||||| |||| ||||| | Sbjct: 668 tgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagtcagtgcctcaa 609 Query: 430 ttaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtaca 489 |||||| ||||||||||| | ||||||||||||| ||| ||||| ||||||||||||| Sbjct: 608 ctaaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtaca 549 Query: 490 cagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccggg 549 ||||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| Sbjct: 548 cagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacgga 489 Query: 550 taacaactccgtcactttctgaactgtt 577 ||||| |||| |||| |||||||||||| Sbjct: 488 taacagctccatcac-ttctgaactgtt 462
>dbj|AK064862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I03, full insert sequence Length = 1725 Score = 315 bits (159), Expect = 9e-83 Identities = 421/508 (82%), Gaps = 1/508 (0%) Strand = Plus / Minus Query: 70 actaaacaggcacatcanccggatactctgcagggtgccttttgatggtatccagcagcg 129 |||||| | |||||||| | || || |||||||||||| | ||||| |||||| |||| Sbjct: 1634 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 1575 Query: 130 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 189 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 1574 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 1515 Query: 190 naagcccgtgntttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 249 ||| | || ||||| || || |||||||||||||||| ||| ||||||||||||| Sbjct: 1514 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 1455 Query: 250 cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 309 ||||||||||||||| ||| || | | | |||||||| ||||||||||||||||||| Sbjct: 1454 cattgttcctgagttcagattcatcttcatcacaccaccagccattcccctgaacccatt 1395 Query: 310 ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 369 ||||||||||||| | ||||| | ||||||||||| ||||| |||||||| |||||| Sbjct: 1394 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 1335 Query: 370 tgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcga 429 |||| ||||||||||| ||||||||||||||||||||||| ||||| |||| ||||| | Sbjct: 1334 tgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagtcagtgcctcaa 1275 Query: 430 ttaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtaca 489 |||||| ||||||||||| | ||||||||||||| ||| ||||| ||||||||||||| Sbjct: 1274 ctaaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtaca 1215 Query: 490 cagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccggg 549 ||||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| Sbjct: 1214 cagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacgga 1155 Query: 550 taacaactccgtcactttctgaactgtt 577 ||||| |||| |||| |||||||||||| Sbjct: 1154 taacagctccatcac-ttctgaactgtt 1128
>dbj|AK060732.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-A05, full insert sequence Length = 1705 Score = 315 bits (159), Expect = 9e-83 Identities = 421/508 (82%), Gaps = 1/508 (0%) Strand = Plus / Minus Query: 70 actaaacaggcacatcanccggatactctgcagggtgccttttgatggtatccagcagcg 129 |||||| | |||||||| | || || |||||||||||| | ||||| |||||| |||| Sbjct: 1560 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 1501 Query: 130 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 189 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 1500 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 1441 Query: 190 naagcccgtgntttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 249 ||| | || ||||| || || |||||||||||||||| ||| ||||||||||||| Sbjct: 1440 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 1381 Query: 250 cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 309 ||||||||||||||| ||| || | | | |||||||| ||||||||||||||||||| Sbjct: 1380 cattgttcctgagttcagattcatcttcatcacaccaccaaccattcccctgaacccatt 1321 Query: 310 ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 369 ||||||||||||| | ||||| | ||||||||||| ||||| |||||||| |||||| Sbjct: 1320 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 1261 Query: 370 tgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcga 429 |||| ||||||||||| ||||||||||||||||||||||| ||||| |||| ||||| | Sbjct: 1260 tgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagtcagtgcctcaa 1201 Query: 430 ttaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtaca 489 |||||| ||||||||||| | ||||||||||||| ||| ||||| ||||||||||||| Sbjct: 1200 ctaaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtaca 1141 Query: 490 cagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccggg 549 ||||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| Sbjct: 1140 cagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacgga 1081 Query: 550 taacaactccgtcactttctgaactgtt 577 ||||| |||| |||| |||||||||||| Sbjct: 1080 taacagctccatcac-ttctgaactgtt 1054
>gb|BT016632.1| Zea mays clone Contig465 mRNA sequence Length = 1349 Score = 224 bits (113), Expect = 3e-55 Identities = 344/419 (82%), Gaps = 2/419 (0%) Strand = Plus / Minus Query: 96 tctgcagggtgccttttgatggtatccagcagcgaccgctcttgctggcgaaggttggaa 155 |||||||||||||| |||| |||||| ||||| | ||||||| | | ||||||||| Sbjct: 1215 tctgcagggtgcctcatgattgtatcccgcagcaattgctcttgttcatgcaggttggaa 1156 Query: 156 gggatttgatcataaacatctgtgaagagctccgnaagcccgtgnttt-ggcatcctctc 214 ||||| | ||| |||||||| ||||| ||||| | || | ||| ||| ||||| || || Sbjct: 1155 gggatcttatcgtaaacatcagtgaaaagctcagtaa-ctggtggttttggcattctttc 1097 Query: 215 ggccacctgaatggcttgcaggagctcttgcctcacattgttcctgagttgagactcttg 274 || ||||| |||||||| || ||||||| ||||| || ||||||| | ||| |||| Sbjct: 1096 tgcaacctggatggcttggagaagctcttttctcactctgctcctgaggtcagattcttc 1037 Query: 275 agtaccgcaccaccatccattcccctgaacccattttctgtacctggagacgggatccct 334 || | | ||||||| |||| |||||||||||||||||||| ||||| | |||||||| Sbjct: 1036 agcatcagaccaccagtcattaccctgaacccattttctgtatctggaaattggatccct 977 Query: 335 tgctgttcgccaatgctccatctcatcagccggcctgtacttggttgaatcgtcggatgt 394 ||||||||||||||||| ||||||||| | |||||||||||||| ||||| |||||||| Sbjct: 976 cgctgttcgccaatgctcaatctcatcaactggcctgtacttggtcgaatcatcggatgt 917 Query: 395 cgagtgatggccgactcggtaggtcatcgcctcgattaaaataggccttccttcagttat 454 ||||||||||||||||||||| |||| ||||| | |||||| || ||||||||||||| Sbjct: 916 cgagtgatggccgactcggtaagtcagtgcctcaactaaaattggtcttccttcagttac 857 Query: 455 agccatttcccgggcggtgtgcactgcactgtacacagcaagagtatcgttgccgtcta 513 ||||||||| ||||| | || | ||| |||||||||||||||| ||| ||||| |||| Sbjct: 856 agccatttctcgggcagcatggattgcgctgtacacagcaagagcatcattgccatcta 798
>gb|AY106153.1| Zea mays PCO079304 mRNA sequence Length = 1709 Score = 216 bits (109), Expect = 6e-53 Identities = 343/419 (81%), Gaps = 2/419 (0%) Strand = Plus / Minus Query: 96 tctgcagggtgccttttgatggtatccagcagcgaccgctcttgctggcgaaggttggaa 155 |||||||||||||| |||| |||||| ||||| | ||||||| | | ||||||||| Sbjct: 1561 tctgcagggtgcctcatgattgtatcccgcagcaattgctcttgttcatgcaggttggaa 1502 Query: 156 gggatttgatcataaacatctgtgaagagctccgnaagcccgt-gntttggcatcctctc 214 ||||| | || |||||||| ||||| ||||| | || | || | |||||||| || || Sbjct: 1501 gggatcttgtcgtaaacatcagtgaaaagctcagtaa-ctggtggttttggcattctttc 1443 Query: 215 ggccacctgaatggcttgcaggagctcttgcctcacattgttcctgagttgagactcttg 274 || ||||| |||||||| || ||||||| ||||| || ||||||| | ||| |||| Sbjct: 1442 tgcaacctggatggcttggagaagctcttttctcactctgctcctgagctcagattcttc 1383 Query: 275 agtaccgcaccaccatccattcccctgaacccattttctgtacctggagacgggatccct 334 || | | ||||||| |||| |||||||||||||||||||| ||||| | |||||||| Sbjct: 1382 agcatcagaccaccagtcattaccctgaacccattttctgtatctggaaatcggatccct 1323 Query: 335 tgctgttcgccaatgctccatctcatcagccggcctgtacttggttgaatcgtcggatgt 394 ||||||||||||||||| ||||||||| | |||||||||||||| ||||| |||||||| Sbjct: 1322 cgctgttcgccaatgctcaatctcatcaactggcctgtacttggtcgaatcatcggatgt 1263 Query: 395 cgagtgatggccgactcggtaggtcatcgcctcgattaaaataggccttccttcagttat 454 ||||||||||||||||||||| |||| ||||| | |||||| || ||||||||||||| Sbjct: 1262 cgagtgatggccgactcggtaagtcagtgcctcaactaaaattggtcttccttcagttac 1203 Query: 455 agccatttcccgggcggtgtgcactgcactgtacacagcaagagtatcgttgccgtcta 513 ||||||||| ||||| | || | ||| |||||||||||||||| ||| ||||| |||| Sbjct: 1202 agccatttctcgggcagcatggattgcgctgtacacagcaagagcatcattgccatcta 1144
>gb|BT018525.1| Zea mays clone EL01N0432G12.d mRNA sequence Length = 1695 Score = 200 bits (101), Expect = 4e-48 Identities = 267/323 (82%) Strand = Plus / Minus Query: 147 aggttggaagggatttgatcataaacatctgtgaagagctccgnaagcccgtgntttggc 206 |||||||||||||| | ||| |||||||| ||||| ||||| | || | | |||||| Sbjct: 1454 aggttggaagggatcttatcgtaaacatcagtgaaaagctcagtaactgggggttttggc 1395 Query: 207 atcctctcggccacctgaatggcttgcaggagctcttgcctcacattgttcctgagttga 266 || || || || ||||| |||||||| || ||||||| ||||| || ||||||| | Sbjct: 1394 attctttctgcaacctggatggcttggagaagctcttttctcactctgctcctgagggca 1335 Query: 267 gactcttgagtaccgcaccaccatccattcccctgaacccattttctgtacctggagacg 326 || |||| || | | ||||||| |||| |||||||||||||||||||| ||||| | Sbjct: 1334 gattcttcagcatcagaccaccagtcattaccctgaacccattttctgtatctggaaatt 1275 Query: 327 ggatcccttgctgttcgccaatgctccatctcatcagccggcctgtacttggttgaatcg 386 |||||||| ||||||||||||||||| ||||||||| | |||||||||||||| ||||| Sbjct: 1274 ggatccctcgctgttcgccaatgctcaatctcatcaactggcctgtacttggtcgaatca 1215 Query: 387 tcggatgtcgagtgatggccgactcggtaggtcatcgcctcgattaaaataggccttcct 446 ||||||||||||||||||||||||||||| |||| ||||| | |||||| || |||||| Sbjct: 1214 tcggatgtcgagtgatggccgactcggtaagtcagtgcctcaactaaaattggtcttcct 1155 Query: 447 tcagttatagccatttcccgggc 469 ||||||| ||||||||| ||||| Sbjct: 1154 tcagttacagccatttctcgggc 1132
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 170 bits (86), Expect = 3e-39 Identities = 158/182 (86%) Strand = Plus / Minus Query: 239 ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 298 |||||||||||||||||||||||||| ||| || | | | |||||||| |||||||| Sbjct: 4211674 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 4211615 Query: 299 ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 358 |||||||||||||||||||||||| | ||||| | ||||||||||| ||||| ||||| Sbjct: 4211614 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 4211555 Query: 359 atcagccggcctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggt 418 ||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 4211554 atcgaccggcctgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagt 4211495 Query: 419 ca 420 || Sbjct: 4211494 ca 4211493 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Minus Query: 431 taaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtacac 490 |||||| ||||||||||| | ||||||||||||| ||| ||||| |||||||||||||| Sbjct: 4211413 taaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtacac 4211354 Query: 491 agcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgggt 550 |||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| | Sbjct: 4211353 agcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacggat 4211294 Query: 551 aacaactccgtcac 564 |||| |||| |||| Sbjct: 4211293 aacagctccatcac 4211280 Score = 58.0 bits (29), Expect = 3e-05 Identities = 91/112 (81%) Strand = Plus / Minus Query: 70 actaaacaggcacatcanccggatactctgcagggtgccttttgatggtatccagcagcg 129 |||||| | |||||||| | || || |||||||||||| | ||||| |||||| |||| Sbjct: 4211930 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 4211871 Query: 130 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaa 181 | |||||||||| | ||||||||||| | || |||||||||||| ||||| Sbjct: 4211870 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaa 4211819
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 170 bits (86), Expect = 3e-39 Identities = 158/182 (86%) Strand = Plus / Minus Query: 239 ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 298 |||||||||||||||||||||||||| ||| || | | | |||||||| |||||||| Sbjct: 4211661 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 4211602 Query: 299 ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 358 |||||||||||||||||||||||| | ||||| | ||||||||||| ||||| ||||| Sbjct: 4211601 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 4211542 Query: 359 atcagccggcctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggt 418 ||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 4211541 atcgaccggcctgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagt 4211482 Query: 419 ca 420 || Sbjct: 4211481 ca 4211480 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Minus Query: 431 taaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtacac 490 |||||| ||||||||||| | ||||||||||||| ||| ||||| |||||||||||||| Sbjct: 4211400 taaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtacac 4211341 Query: 491 agcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgggt 550 |||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| | Sbjct: 4211340 agcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacggat 4211281 Query: 551 aacaactccgtcac 564 |||| |||| |||| Sbjct: 4211280 aacagctccatcac 4211267 Score = 58.0 bits (29), Expect = 3e-05 Identities = 91/112 (81%) Strand = Plus / Minus Query: 70 actaaacaggcacatcanccggatactctgcagggtgccttttgatggtatccagcagcg 129 |||||| | |||||||| | || || |||||||||||| | ||||| |||||| |||| Sbjct: 4211917 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 4211858 Query: 130 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaa 181 | |||||||||| | ||||||||||| | || |||||||||||| ||||| Sbjct: 4211857 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaa 4211806
>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104999 Score = 170 bits (86), Expect = 3e-39 Identities = 158/182 (86%) Strand = Plus / Plus Query: 239 ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 298 |||||||||||||||||||||||||| ||| || | | | |||||||| |||||||| Sbjct: 72109 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 72168 Query: 299 ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 358 |||||||||||||||||||||||| | ||||| | ||||||||||| ||||| ||||| Sbjct: 72169 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 72228 Query: 359 atcagccggcctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggt 418 ||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 72229 atcgaccggcctgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagt 72288 Query: 419 ca 420 || Sbjct: 72289 ca 72290 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Plus Query: 431 taaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtacac 490 |||||| ||||||||||| | ||||||||||||| ||| ||||| |||||||||||||| Sbjct: 72370 taaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtacac 72429 Query: 491 agcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgggt 550 |||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| | Sbjct: 72430 agcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacggat 72489 Query: 551 aacaactccgtcac 564 |||| |||| |||| Sbjct: 72490 aacagctccatcac 72503 Score = 58.0 bits (29), Expect = 3e-05 Identities = 91/112 (81%) Strand = Plus / Plus Query: 70 actaaacaggcacatcanccggatactctgcagggtgccttttgatggtatccagcagcg 129 |||||| | |||||||| | || || |||||||||||| | ||||| |||||| |||| Sbjct: 71853 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 71912 Query: 130 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaa 181 | |||||||||| | ||||||||||| | || |||||||||||| ||||| Sbjct: 71913 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaa 71964
>emb|AL021480.1|CEY39E4A Caenorhabditis elegans YAC Y39E4A, complete sequence Length = 26209 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 384 tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 430 ||||||||||| || |||||||||| ||||||||||| |||||||| Sbjct: 18640 tcgtcggatgttgaatgatggccgaggcggtaggtcatggcctcgat 18686
>gb|AC121233.16| Medicago truncatula clone mth2-14g13, complete sequence Length = 129617 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 369 ctgtacttggttgaatcgtcggatgtcgagtgatggccgactc 411 |||||||||||||||||||||||||| || || ||||| |||| Sbjct: 57722 ctgtacttggttgaatcgtcggatgtagaatggtggcctactc 57680
>gb|AF251067.1|AF251067 Oryza sativa branched chain alpha-keto acid dehydrogenase E1-alpha subunit mRNA, partial cds Length = 258 Score = 54.0 bits (27), Expect = 5e-04 Identities = 76/91 (83%), Gaps = 1/91 (1%) Strand = Plus / Minus Query: 487 acacagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgacccc 546 |||||||||||| ||| || || |||| ||||||||||| ||||| || || ||||| | Sbjct: 258 acacagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccac 199 Query: 547 gggtaacaactccgtcactttctgaactgtt 577 || ||||| |||| |||| |||||||||||| Sbjct: 198 ggataacagctccatcac-ttctgaactgtt 169
>ref|NM_001038287.1| Caenorhabditis elegans Y39E4A.3a (Transketolase) mRNA, complete cds Length = 1400 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 384 tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 430 ||||||||||| || |||||||||| ||||||||||| |||||||| Sbjct: 1075 tcgtcggatgttgaatgatggccgaggcggtaggtcatggcctcgat 1029
>ref|NM_001038288.1| Caenorhabditis elegans Y39E4A.3b (Transketolase) mRNA, complete cds Length = 1677 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 384 tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 430 ||||||||||| || |||||||||| ||||||||||| |||||||| Sbjct: 1075 tcgtcggatgttgaatgatggccgaggcggtaggtcatggcctcgat 1029
>ref|XM_756727.1| Ustilago maydis 521 hypothetical protein (UM05673.1) partial mRNA Length = 2361 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 384 tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 430 ||||| || |||||||| || ||||| ||||||||||| |||||||| Sbjct: 1997 tcgtccgaggtcgagtggtgaccgacgcggtaggtcatagcctcgat 1951
>ref|NM_111356.3| Arabidopsis thaliana structural constituent of ribosome AT3G04840 mRNA, complete cds Length = 1004 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 ccatctcatcagccggcctgt 372 ||||||||||||||||||||| Sbjct: 812 ccatctcatcagccggcctgt 792
>gb|AY081585.1| Arabidopsis thaliana putative 40S ribosomal protein S3A (S phase specific) (At3g04840) mRNA, complete cds Length = 870 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 ccatctcatcagccggcctgt 372 ||||||||||||||||||||| Sbjct: 754 ccatctcatcagccggcctgt 734
>gb|AY062796.1| Arabidopsis thaliana putative 40S ribosomal protein S3A (S phase specific) (At3g04840; T9J14.21) mRNA, complete cds Length = 1000 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 ccatctcatcagccggcctgt 372 ||||||||||||||||||||| Sbjct: 811 ccatctcatcagccggcctgt 791
>dbj|AK220818.1| Arabidopsis thaliana mRNA for 40S ribosomal protein S3A like protein, complete cds, clone: RAFL22-32-J16 Length = 468 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 ccatctcatcagccggcctgt 372 ||||||||||||||||||||| Sbjct: 269 ccatctcatcagccggcctgt 249
>emb|BX822077.1|CNS0A7LX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB10ZB01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 716 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 ccatctcatcagccggcctgt 372 ||||||||||||||||||||| Sbjct: 524 ccatctcatcagccggcctgt 504
>emb|BX824488.1|CNS0A5KP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH51ZC05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 927 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 ccatctcatcagccggcctgt 372 ||||||||||||||||||||| Sbjct: 744 ccatctcatcagccggcctgt 724
>gb|AC009465.7|AC009465 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete sequence Length = 93234 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 ccatctcatcagccggcctgt 372 ||||||||||||||||||||| Sbjct: 73562 ccatctcatcagccggcctgt 73582
>gb|AY085787.1| Arabidopsis thaliana clone 18185 mRNA, complete sequence Length = 1001 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 ccatctcatcagccggcctgt 372 ||||||||||||||||||||| Sbjct: 812 ccatctcatcagccggcctgt 792
>gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0052F16, complete sequence Length = 162082 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gggtacttacagactccaac 49 |||||||||||||||||||| Sbjct: 126085 gggtacttacagactccaac 126104
>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0111O13, complete sequence Length = 126332 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 aaatacattattgcatgggt 33 |||||||||||||||||||| Sbjct: 64032 aaatacattattgcatgggt 64051
>gb|AC012297.12| Mus musculus chromosome 7, clone RP23-78H9, complete sequence Length = 180139 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 atgctccatctcatcagccg 366 |||||||||||||||||||| Sbjct: 15240 atgctccatctcatcagccg 15221
>ref|XM_584132.2| PREDICTED: Bos taurus similar to Sulfonylurea receptor 1 (LOC538996), mRNA Length = 2629 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 acagactccaacaacatcgc 57 |||||||||||||||||||| Sbjct: 1483 acagactccaacaacatcgc 1502
>gb|AY485632.1| Sphaerophorus globosus DNA-dependent RNA polymerase II second largest subunit gene, partial cds Length = 2758 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 aggagctcttgcctcacatt 253 |||||||||||||||||||| Sbjct: 461 aggagctcttgcctcacatt 480
>emb|AL031433.4|HS171N11 Human DNA sequence from clone RP1-171N11 on chromosome 6q23 Contains the 5' end of a novel gene, the gene for UC28 protein (UROC28) and a CpG island, complete sequence Length = 129227 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 ccacctgaatggcttgcagg 236 |||||||||||||||||||| Sbjct: 80878 ccacctgaatggcttgcagg 80859
>gb|AC093879.3| Homo sapiens BAC clone RP11-650J17 from 4, complete sequence Length = 216870 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 gcttgcaggagctcttgcct 247 |||||||||||||||||||| Sbjct: 143206 gcttgcaggagctcttgcct 143187
>ref|NM_058988.1| Caenorhabditis elegans Y119C1B.10 (Y119C1B.10) mRNA, complete cds Length = 915 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tacagactccaacaacatcg 56 |||||||||||||||||||| Sbjct: 633 tacagactccaacaacatcg 652
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gggtacttacagactccaac 49 |||||||||||||||||||| Sbjct: 16334732 gggtacttacagactccaac 16334751 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 aaatacattattgcatgggt 33 |||||||||||||||||||| Sbjct: 2231601 aaatacattattgcatgggt 2231620
>dbj|AK120753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006K02, full insert sequence Length = 4617 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gggtacttacagactccaac 49 |||||||||||||||||||| Sbjct: 2472 gggtacttacagactccaac 2453
>dbj|AK070681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063E02, full insert sequence Length = 3424 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gggtacttacagactccaac 49 |||||||||||||||||||| Sbjct: 2277 gggtacttacagactccaac 2258
>gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complete sequence Length = 190414 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 atgctccatctcatcagccg 366 |||||||||||||||||||| Sbjct: 1911 atgctccatctcatcagccg 1930 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,012,598 Number of Sequences: 3902068 Number of extensions: 4012598 Number of successful extensions: 115648 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115517 Number of HSP's gapped (non-prelim): 129 length of query: 586 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 563 effective length of database: 17,143,297,704 effective search space: 9651676607352 effective search space used: 9651676607352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)