ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20e13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK068933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 315 9e-83
2dbj|AK064862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 315 9e-83
3dbj|AK060732.1| Oryza sativa (japonica cultivar-group) cDNA clon... 315 9e-83
4gb|BT016632.1| Zea mays clone Contig465 mRNA sequence 224 3e-55
5gb|AY106153.1| Zea mays PCO079304 mRNA sequence 216 6e-53
6gb|BT018525.1| Zea mays clone EL01N0432G12.d mRNA sequence 200 4e-48
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 170 3e-39
9emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial se... 170 3e-39
10emb|AL021480.1|CEY39E4A Caenorhabditis elegans YAC Y39E4A, compl... 54 5e-04
11gb|AC121233.16| Medicago truncatula clone mth2-14g13, complete s... 54 5e-04
12gb|AF251067.1|AF251067 Oryza sativa branched chain alpha-keto ac... 54 5e-04
13ref|NM_001038287.1| Caenorhabditis elegans Y39E4A.3a (Transketol... 54 5e-04
14ref|NM_001038288.1| Caenorhabditis elegans Y39E4A.3b (Transketol... 54 5e-04
15ref|XM_756727.1| Ustilago maydis 521 hypothetical protein (UM056... 46 0.13
16ref|NM_111356.3| Arabidopsis thaliana structural constituent of ... 42 2.0
17gb|AY081585.1| Arabidopsis thaliana putative 40S ribosomal prote... 42 2.0
18gb|AY062796.1| Arabidopsis thaliana putative 40S ribosomal prote... 42 2.0
19dbj|AK220818.1| Arabidopsis thaliana mRNA for 40S ribosomal prot... 42 2.0
20emb|BX822077.1|CNS0A7LX Arabidopsis thaliana Full-length cDNA Co... 42 2.0
21emb|BX824488.1|CNS0A5KP Arabidopsis thaliana Full-length cDNA Co... 42 2.0
22gb|AC009465.7|AC009465 Arabidopsis thaliana chromosome 3 BAC T9J... 42 2.0
23gb|AY085787.1| Arabidopsis thaliana clone 18185 mRNA, complete s... 42 2.0
24gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
25gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
26gb|AC012297.12| Mus musculus chromosome 7, clone RP23-78H9, comp... 40 8.0
27ref|XM_584132.2| PREDICTED: Bos taurus similar to Sulfonylurea r... 40 8.0
28gb|AY485632.1| Sphaerophorus globosus DNA-dependent RNA polymera... 40 8.0
29emb|AL031433.4|HS171N11 Human DNA sequence from clone RP1-171N11... 40 8.0
30gb|AC093879.3| Homo sapiens BAC clone RP11-650J17 from 4, comple... 40 8.0
31ref|NM_058988.1| Caenorhabditis elegans Y119C1B.10 (Y119C1B.10) ... 40 8.0
32dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
33dbj|AK120753.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.0
34dbj|AK070681.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.0
35gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complet... 40 8.0

>dbj|AK068933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002N22, full
           insert sequence
          Length = 1157

 Score =  315 bits (159), Expect = 9e-83
 Identities = 421/508 (82%), Gaps = 1/508 (0%)
 Strand = Plus / Minus

                                                                       
Query: 70  actaaacaggcacatcanccggatactctgcagggtgccttttgatggtatccagcagcg 129
           |||||| | |||||||| | || || |||||||||||| | ||||| ||||||  |||| 
Sbjct: 968 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 909

                                                                       
Query: 130 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 189
           | ||||||||||  |  ||||||||||| | || |||||||||||| ||||| || || |
Sbjct: 908 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 849

                                                                       
Query: 190 naagcccgtgntttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 249
             |||    | || ||||| || || |||||||||||||||| ||| |||||||||||||
Sbjct: 848 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 789

                                                                       
Query: 250 cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 309
           ||||||||||||||| ||| || |    | | |||||||| |||||||||||||||||||
Sbjct: 788 cattgttcctgagttcagattcatcttcatcacaccaccagccattcccctgaacccatt 729

                                                                       
Query: 310 ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 369
           ||||||||||||| |  ||||| |  ||||||||||| ||||| ||||||||  ||||||
Sbjct: 728 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 669

                                                                       
Query: 370 tgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcga 429
           |||| ||||||||||| ||||||||||||||||||||||| ||||| ||||  ||||| |
Sbjct: 668 tgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagtcagtgcctcaa 609

                                                                       
Query: 430 ttaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtaca 489
            |||||| |||||||||||  | ||||||||||||| ||| ||||| |||||||||||||
Sbjct: 608 ctaaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtaca 549

                                                                       
Query: 490 cagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccggg 549
           ||||||||| ||| || || ||||  ||||||||||| ||||| || || ||||| ||| 
Sbjct: 548 cagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacgga 489

                                       
Query: 550 taacaactccgtcactttctgaactgtt 577
           ||||| |||| |||| ||||||||||||
Sbjct: 488 taacagctccatcac-ttctgaactgtt 462



to top

>dbj|AK064862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I03, full
            insert sequence
          Length = 1725

 Score =  315 bits (159), Expect = 9e-83
 Identities = 421/508 (82%), Gaps = 1/508 (0%)
 Strand = Plus / Minus

                                                                        
Query: 70   actaaacaggcacatcanccggatactctgcagggtgccttttgatggtatccagcagcg 129
            |||||| | |||||||| | || || |||||||||||| | ||||| ||||||  |||| 
Sbjct: 1634 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 1575

                                                                        
Query: 130  accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 189
            | ||||||||||  |  ||||||||||| | || |||||||||||| ||||| || || |
Sbjct: 1574 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 1515

                                                                        
Query: 190  naagcccgtgntttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 249
              |||    | || ||||| || || |||||||||||||||| ||| |||||||||||||
Sbjct: 1514 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 1455

                                                                        
Query: 250  cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 309
            ||||||||||||||| ||| || |    | | |||||||| |||||||||||||||||||
Sbjct: 1454 cattgttcctgagttcagattcatcttcatcacaccaccagccattcccctgaacccatt 1395

                                                                        
Query: 310  ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 369
            ||||||||||||| |  ||||| |  ||||||||||| ||||| ||||||||  ||||||
Sbjct: 1394 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 1335

                                                                        
Query: 370  tgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcga 429
            |||| ||||||||||| ||||||||||||||||||||||| ||||| ||||  ||||| |
Sbjct: 1334 tgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagtcagtgcctcaa 1275

                                                                        
Query: 430  ttaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtaca 489
             |||||| |||||||||||  | ||||||||||||| ||| ||||| |||||||||||||
Sbjct: 1274 ctaaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtaca 1215

                                                                        
Query: 490  cagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccggg 549
            ||||||||| ||| || || ||||  ||||||||||| ||||| || || ||||| ||| 
Sbjct: 1214 cagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacgga 1155

                                        
Query: 550  taacaactccgtcactttctgaactgtt 577
            ||||| |||| |||| ||||||||||||
Sbjct: 1154 taacagctccatcac-ttctgaactgtt 1128



to top

>dbj|AK060732.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-A05, full
            insert sequence
          Length = 1705

 Score =  315 bits (159), Expect = 9e-83
 Identities = 421/508 (82%), Gaps = 1/508 (0%)
 Strand = Plus / Minus

                                                                        
Query: 70   actaaacaggcacatcanccggatactctgcagggtgccttttgatggtatccagcagcg 129
            |||||| | |||||||| | || || |||||||||||| | ||||| ||||||  |||| 
Sbjct: 1560 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 1501

                                                                        
Query: 130  accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 189
            | ||||||||||  |  ||||||||||| | || |||||||||||| ||||| || || |
Sbjct: 1500 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 1441

                                                                        
Query: 190  naagcccgtgntttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 249
              |||    | || ||||| || || |||||||||||||||| ||| |||||||||||||
Sbjct: 1440 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 1381

                                                                        
Query: 250  cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 309
            ||||||||||||||| ||| || |    | | |||||||| |||||||||||||||||||
Sbjct: 1380 cattgttcctgagttcagattcatcttcatcacaccaccaaccattcccctgaacccatt 1321

                                                                        
Query: 310  ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 369
            ||||||||||||| |  ||||| |  ||||||||||| ||||| ||||||||  ||||||
Sbjct: 1320 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 1261

                                                                        
Query: 370  tgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcga 429
            |||| ||||||||||| ||||||||||||||||||||||| ||||| ||||  ||||| |
Sbjct: 1260 tgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagtcagtgcctcaa 1201

                                                                        
Query: 430  ttaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtaca 489
             |||||| |||||||||||  | ||||||||||||| ||| ||||| |||||||||||||
Sbjct: 1200 ctaaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtaca 1141

                                                                        
Query: 490  cagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccggg 549
            ||||||||| ||| || || ||||  ||||||||||| ||||| || || ||||| ||| 
Sbjct: 1140 cagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacgga 1081

                                        
Query: 550  taacaactccgtcactttctgaactgtt 577
            ||||| |||| |||| ||||||||||||
Sbjct: 1080 taacagctccatcac-ttctgaactgtt 1054



to top

>gb|BT016632.1| Zea mays clone Contig465 mRNA sequence
          Length = 1349

 Score =  224 bits (113), Expect = 3e-55
 Identities = 344/419 (82%), Gaps = 2/419 (0%)
 Strand = Plus / Minus

                                                                        
Query: 96   tctgcagggtgccttttgatggtatccagcagcgaccgctcttgctggcgaaggttggaa 155
            ||||||||||||||  |||| |||||| ||||| |  ||||||| |   | |||||||||
Sbjct: 1215 tctgcagggtgcctcatgattgtatcccgcagcaattgctcttgttcatgcaggttggaa 1156

                                                                        
Query: 156  gggatttgatcataaacatctgtgaagagctccgnaagcccgtgnttt-ggcatcctctc 214
            ||||| | ||| |||||||| ||||| ||||| | || |  ||| ||| ||||| || ||
Sbjct: 1155 gggatcttatcgtaaacatcagtgaaaagctcagtaa-ctggtggttttggcattctttc 1097

                                                                        
Query: 215  ggccacctgaatggcttgcaggagctcttgcctcacattgttcctgagttgagactcttg 274
             || ||||| |||||||| || |||||||  |||||  || ||||||| | ||| |||| 
Sbjct: 1096 tgcaacctggatggcttggagaagctcttttctcactctgctcctgaggtcagattcttc 1037

                                                                        
Query: 275  agtaccgcaccaccatccattcccctgaacccattttctgtacctggagacgggatccct 334
            || | |  |||||||  |||| |||||||||||||||||||| ||||| |  ||||||||
Sbjct: 1036 agcatcagaccaccagtcattaccctgaacccattttctgtatctggaaattggatccct 977

                                                                        
Query: 335  tgctgttcgccaatgctccatctcatcagccggcctgtacttggttgaatcgtcggatgt 394
             ||||||||||||||||| ||||||||| | |||||||||||||| ||||| ||||||||
Sbjct: 976  cgctgttcgccaatgctcaatctcatcaactggcctgtacttggtcgaatcatcggatgt 917

                                                                        
Query: 395  cgagtgatggccgactcggtaggtcatcgcctcgattaaaataggccttccttcagttat 454
            ||||||||||||||||||||| ||||  ||||| | |||||| || ||||||||||||| 
Sbjct: 916  cgagtgatggccgactcggtaagtcagtgcctcaactaaaattggtcttccttcagttac 857

                                                                       
Query: 455  agccatttcccgggcggtgtgcactgcactgtacacagcaagagtatcgttgccgtcta 513
            ||||||||| ||||| |  || | ||| |||||||||||||||| ||| ||||| ||||
Sbjct: 856  agccatttctcgggcagcatggattgcgctgtacacagcaagagcatcattgccatcta 798



to top

>gb|AY106153.1| Zea mays PCO079304 mRNA sequence
          Length = 1709

 Score =  216 bits (109), Expect = 6e-53
 Identities = 343/419 (81%), Gaps = 2/419 (0%)
 Strand = Plus / Minus

                                                                        
Query: 96   tctgcagggtgccttttgatggtatccagcagcgaccgctcttgctggcgaaggttggaa 155
            ||||||||||||||  |||| |||||| ||||| |  ||||||| |   | |||||||||
Sbjct: 1561 tctgcagggtgcctcatgattgtatcccgcagcaattgctcttgttcatgcaggttggaa 1502

                                                                        
Query: 156  gggatttgatcataaacatctgtgaagagctccgnaagcccgt-gntttggcatcctctc 214
            ||||| |  || |||||||| ||||| ||||| | || |  || | |||||||| || ||
Sbjct: 1501 gggatcttgtcgtaaacatcagtgaaaagctcagtaa-ctggtggttttggcattctttc 1443

                                                                        
Query: 215  ggccacctgaatggcttgcaggagctcttgcctcacattgttcctgagttgagactcttg 274
             || ||||| |||||||| || |||||||  |||||  || ||||||| | ||| |||| 
Sbjct: 1442 tgcaacctggatggcttggagaagctcttttctcactctgctcctgagctcagattcttc 1383

                                                                        
Query: 275  agtaccgcaccaccatccattcccctgaacccattttctgtacctggagacgggatccct 334
            || | |  |||||||  |||| |||||||||||||||||||| ||||| |  ||||||||
Sbjct: 1382 agcatcagaccaccagtcattaccctgaacccattttctgtatctggaaatcggatccct 1323

                                                                        
Query: 335  tgctgttcgccaatgctccatctcatcagccggcctgtacttggttgaatcgtcggatgt 394
             ||||||||||||||||| ||||||||| | |||||||||||||| ||||| ||||||||
Sbjct: 1322 cgctgttcgccaatgctcaatctcatcaactggcctgtacttggtcgaatcatcggatgt 1263

                                                                        
Query: 395  cgagtgatggccgactcggtaggtcatcgcctcgattaaaataggccttccttcagttat 454
            ||||||||||||||||||||| ||||  ||||| | |||||| || ||||||||||||| 
Sbjct: 1262 cgagtgatggccgactcggtaagtcagtgcctcaactaaaattggtcttccttcagttac 1203

                                                                       
Query: 455  agccatttcccgggcggtgtgcactgcactgtacacagcaagagtatcgttgccgtcta 513
            ||||||||| ||||| |  || | ||| |||||||||||||||| ||| ||||| ||||
Sbjct: 1202 agccatttctcgggcagcatggattgcgctgtacacagcaagagcatcattgccatcta 1144



to top

>gb|BT018525.1| Zea mays clone EL01N0432G12.d mRNA sequence
          Length = 1695

 Score =  200 bits (101), Expect = 4e-48
 Identities = 267/323 (82%)
 Strand = Plus / Minus

                                                                        
Query: 147  aggttggaagggatttgatcataaacatctgtgaagagctccgnaagcccgtgntttggc 206
            |||||||||||||| | ||| |||||||| ||||| ||||| | ||    | | ||||||
Sbjct: 1454 aggttggaagggatcttatcgtaaacatcagtgaaaagctcagtaactgggggttttggc 1395

                                                                        
Query: 207  atcctctcggccacctgaatggcttgcaggagctcttgcctcacattgttcctgagttga 266
            || || || || ||||| |||||||| || |||||||  |||||  || |||||||   |
Sbjct: 1394 attctttctgcaacctggatggcttggagaagctcttttctcactctgctcctgagggca 1335

                                                                        
Query: 267  gactcttgagtaccgcaccaccatccattcccctgaacccattttctgtacctggagacg 326
            || |||| || | |  |||||||  |||| |||||||||||||||||||| ||||| |  
Sbjct: 1334 gattcttcagcatcagaccaccagtcattaccctgaacccattttctgtatctggaaatt 1275

                                                                        
Query: 327  ggatcccttgctgttcgccaatgctccatctcatcagccggcctgtacttggttgaatcg 386
            |||||||| ||||||||||||||||| ||||||||| | |||||||||||||| ||||| 
Sbjct: 1274 ggatccctcgctgttcgccaatgctcaatctcatcaactggcctgtacttggtcgaatca 1215

                                                                        
Query: 387  tcggatgtcgagtgatggccgactcggtaggtcatcgcctcgattaaaataggccttcct 446
            ||||||||||||||||||||||||||||| ||||  ||||| | |||||| || ||||||
Sbjct: 1214 tcggatgtcgagtgatggccgactcggtaagtcagtgcctcaactaaaattggtcttcct 1155

                                   
Query: 447  tcagttatagccatttcccgggc 469
            ||||||| ||||||||| |||||
Sbjct: 1154 tcagttacagccatttctcgggc 1132



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  170 bits (86), Expect = 3e-39
 Identities = 158/182 (86%)
 Strand = Plus / Minus

                                                                           
Query: 239     ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 298
               |||||||||||||||||||||||||| ||| || |    | | |||||||| ||||||||
Sbjct: 4211674 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 4211615

                                                                           
Query: 299     ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 358
               |||||||||||||||||||||||| |  ||||| |  ||||||||||| ||||| |||||
Sbjct: 4211614 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 4211555

                                                                           
Query: 359     atcagccggcctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggt 418
               |||  |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 4211554 atcgaccggcctgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagt 4211495

                 
Query: 419     ca 420
               ||
Sbjct: 4211494 ca 4211493



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 113/134 (84%)
 Strand = Plus / Minus

                                                                           
Query: 431     taaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtacac 490
               |||||| |||||||||||  | ||||||||||||| ||| ||||| ||||||||||||||
Sbjct: 4211413 taaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtacac 4211354

                                                                           
Query: 491     agcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgggt 550
               |||||||| ||| || || ||||  ||||||||||| ||||| || || ||||| ||| |
Sbjct: 4211353 agcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacggat 4211294

                             
Query: 551     aacaactccgtcac 564
               |||| |||| ||||
Sbjct: 4211293 aacagctccatcac 4211280



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 91/112 (81%)
 Strand = Plus / Minus

                                                                           
Query: 70      actaaacaggcacatcanccggatactctgcagggtgccttttgatggtatccagcagcg 129
               |||||| | |||||||| | || || |||||||||||| | ||||| ||||||  |||| 
Sbjct: 4211930 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 4211871

                                                                   
Query: 130     accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaa 181
               | ||||||||||  |  ||||||||||| | || |||||||||||| |||||
Sbjct: 4211870 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaa 4211819



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  170 bits (86), Expect = 3e-39
 Identities = 158/182 (86%)
 Strand = Plus / Minus

                                                                           
Query: 239     ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 298
               |||||||||||||||||||||||||| ||| || |    | | |||||||| ||||||||
Sbjct: 4211661 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 4211602

                                                                           
Query: 299     ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 358
               |||||||||||||||||||||||| |  ||||| |  ||||||||||| ||||| |||||
Sbjct: 4211601 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 4211542

                                                                           
Query: 359     atcagccggcctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggt 418
               |||  |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 4211541 atcgaccggcctgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagt 4211482

                 
Query: 419     ca 420
               ||
Sbjct: 4211481 ca 4211480



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 113/134 (84%)
 Strand = Plus / Minus

                                                                           
Query: 431     taaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtacac 490
               |||||| |||||||||||  | ||||||||||||| ||| ||||| ||||||||||||||
Sbjct: 4211400 taaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtacac 4211341

                                                                           
Query: 491     agcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgggt 550
               |||||||| ||| || || ||||  ||||||||||| ||||| || || ||||| ||| |
Sbjct: 4211340 agcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacggat 4211281

                             
Query: 551     aacaactccgtcac 564
               |||| |||| ||||
Sbjct: 4211280 aacagctccatcac 4211267



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 91/112 (81%)
 Strand = Plus / Minus

                                                                           
Query: 70      actaaacaggcacatcanccggatactctgcagggtgccttttgatggtatccagcagcg 129
               |||||| | |||||||| | || || |||||||||||| | ||||| ||||||  |||| 
Sbjct: 4211917 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 4211858

                                                                   
Query: 130     accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaa 181
               | ||||||||||  |  ||||||||||| | || |||||||||||| |||||
Sbjct: 4211857 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaa 4211806



to top

>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09
             of library OSJNBb from chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 104999

 Score =  170 bits (86), Expect = 3e-39
 Identities = 158/182 (86%)
 Strand = Plus / Plus

                                                                         
Query: 239   ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 298
             |||||||||||||||||||||||||| ||| || |    | | |||||||| ||||||||
Sbjct: 72109 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 72168

                                                                         
Query: 299   ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 358
             |||||||||||||||||||||||| |  ||||| |  ||||||||||| ||||| |||||
Sbjct: 72169 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 72228

                                                                         
Query: 359   atcagccggcctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggt 418
             |||  |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 72229 atcgaccggcctgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagt 72288

               
Query: 419   ca 420
             ||
Sbjct: 72289 ca 72290



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 113/134 (84%)
 Strand = Plus / Plus

                                                                         
Query: 431   taaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtacac 490
             |||||| |||||||||||  | ||||||||||||| ||| ||||| ||||||||||||||
Sbjct: 72370 taaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtacac 72429

                                                                         
Query: 491   agcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgggt 550
             |||||||| ||| || || ||||  ||||||||||| ||||| || || ||||| ||| |
Sbjct: 72430 agcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacggat 72489

                           
Query: 551   aacaactccgtcac 564
             |||| |||| ||||
Sbjct: 72490 aacagctccatcac 72503



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 91/112 (81%)
 Strand = Plus / Plus

                                                                         
Query: 70    actaaacaggcacatcanccggatactctgcagggtgccttttgatggtatccagcagcg 129
             |||||| | |||||||| | || || |||||||||||| | ||||| ||||||  |||| 
Sbjct: 71853 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 71912

                                                                 
Query: 130   accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaa 181
             | ||||||||||  |  ||||||||||| | || |||||||||||| |||||
Sbjct: 71913 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaa 71964



to top

>emb|AL021480.1|CEY39E4A Caenorhabditis elegans YAC Y39E4A, complete sequence
          Length = 26209

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 384   tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 430
             ||||||||||| || ||||||||||  ||||||||||| ||||||||
Sbjct: 18640 tcgtcggatgttgaatgatggccgaggcggtaggtcatggcctcgat 18686



to top

>gb|AC121233.16| Medicago truncatula clone mth2-14g13, complete sequence
          Length = 129617

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 369   ctgtacttggttgaatcgtcggatgtcgagtgatggccgactc 411
             |||||||||||||||||||||||||| || || ||||| ||||
Sbjct: 57722 ctgtacttggttgaatcgtcggatgtagaatggtggcctactc 57680



to top

>gb|AF251067.1|AF251067 Oryza sativa branched chain alpha-keto acid dehydrogenase E1-alpha
           subunit mRNA, partial cds
          Length = 258

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 76/91 (83%), Gaps = 1/91 (1%)
 Strand = Plus / Minus

                                                                       
Query: 487 acacagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgacccc 546
           |||||||||||| ||| || || ||||  ||||||||||| ||||| || || ||||| |
Sbjct: 258 acacagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccac 199

                                          
Query: 547 gggtaacaactccgtcactttctgaactgtt 577
           || ||||| |||| |||| ||||||||||||
Sbjct: 198 ggataacagctccatcac-ttctgaactgtt 169



to top

>ref|NM_001038287.1| Caenorhabditis elegans Y39E4A.3a (Transketolase) mRNA, complete cds
          Length = 1400

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 384  tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 430
            ||||||||||| || ||||||||||  ||||||||||| ||||||||
Sbjct: 1075 tcgtcggatgttgaatgatggccgaggcggtaggtcatggcctcgat 1029



to top

>ref|NM_001038288.1| Caenorhabditis elegans Y39E4A.3b (Transketolase) mRNA, complete cds
          Length = 1677

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 384  tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 430
            ||||||||||| || ||||||||||  ||||||||||| ||||||||
Sbjct: 1075 tcgtcggatgttgaatgatggccgaggcggtaggtcatggcctcgat 1029



to top

>ref|XM_756727.1| Ustilago maydis 521 hypothetical protein (UM05673.1) partial mRNA
          Length = 2361

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 384  tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 430
            ||||| || |||||||| || ||||| ||||||||||| ||||||||
Sbjct: 1997 tcgtccgaggtcgagtggtgaccgacgcggtaggtcatagcctcgat 1951



to top

>ref|NM_111356.3| Arabidopsis thaliana structural constituent of ribosome AT3G04840
           mRNA, complete cds
          Length = 1004

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 352 ccatctcatcagccggcctgt 372
           |||||||||||||||||||||
Sbjct: 812 ccatctcatcagccggcctgt 792



to top

>gb|AY081585.1| Arabidopsis thaliana putative 40S ribosomal protein S3A (S phase
           specific) (At3g04840) mRNA, complete cds
          Length = 870

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 352 ccatctcatcagccggcctgt 372
           |||||||||||||||||||||
Sbjct: 754 ccatctcatcagccggcctgt 734



to top

>gb|AY062796.1| Arabidopsis thaliana putative 40S ribosomal protein S3A (S phase
           specific) (At3g04840; T9J14.21) mRNA, complete cds
          Length = 1000

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 352 ccatctcatcagccggcctgt 372
           |||||||||||||||||||||
Sbjct: 811 ccatctcatcagccggcctgt 791



to top

>dbj|AK220818.1| Arabidopsis thaliana mRNA for 40S ribosomal protein S3A like
           protein, complete cds, clone: RAFL22-32-J16
          Length = 468

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 352 ccatctcatcagccggcctgt 372
           |||||||||||||||||||||
Sbjct: 269 ccatctcatcagccggcctgt 249



to top

>emb|BX822077.1|CNS0A7LX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB10ZB01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 716

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 352 ccatctcatcagccggcctgt 372
           |||||||||||||||||||||
Sbjct: 524 ccatctcatcagccggcctgt 504



to top

>emb|BX824488.1|CNS0A5KP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH51ZC05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 927

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 352 ccatctcatcagccggcctgt 372
           |||||||||||||||||||||
Sbjct: 744 ccatctcatcagccggcctgt 724



to top

>gb|AC009465.7|AC009465 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete
             sequence
          Length = 93234

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 352   ccatctcatcagccggcctgt 372
             |||||||||||||||||||||
Sbjct: 73562 ccatctcatcagccggcctgt 73582



to top

>gb|AY085787.1| Arabidopsis thaliana clone 18185 mRNA, complete sequence
          Length = 1001

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 352 ccatctcatcagccggcctgt 372
           |||||||||||||||||||||
Sbjct: 812 ccatctcatcagccggcctgt 792



to top

>gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0052F16,
              complete sequence
          Length = 162082

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     gggtacttacagactccaac 49
              ||||||||||||||||||||
Sbjct: 126085 gggtacttacagactccaac 126104



to top

>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0111O13, complete sequence
          Length = 126332

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    aaatacattattgcatgggt 33
             ||||||||||||||||||||
Sbjct: 64032 aaatacattattgcatgggt 64051



to top

>gb|AC012297.12| Mus musculus chromosome 7, clone RP23-78H9, complete sequence
          Length = 180139

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   atgctccatctcatcagccg 366
             ||||||||||||||||||||
Sbjct: 15240 atgctccatctcatcagccg 15221



to top

>ref|XM_584132.2| PREDICTED: Bos taurus similar to Sulfonylurea receptor 1 (LOC538996),
            mRNA
          Length = 2629

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   acagactccaacaacatcgc 57
            ||||||||||||||||||||
Sbjct: 1483 acagactccaacaacatcgc 1502



to top

>gb|AY485632.1| Sphaerophorus globosus DNA-dependent RNA polymerase II second
           largest subunit gene, partial cds
          Length = 2758

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 234 aggagctcttgcctcacatt 253
           ||||||||||||||||||||
Sbjct: 461 aggagctcttgcctcacatt 480



to top

>emb|AL031433.4|HS171N11 Human DNA sequence from clone RP1-171N11 on chromosome 6q23 Contains
             the 5' end of a novel gene, the gene for UC28 protein
             (UROC28) and a CpG island, complete sequence
          Length = 129227

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   ccacctgaatggcttgcagg 236
             ||||||||||||||||||||
Sbjct: 80878 ccacctgaatggcttgcagg 80859



to top

>gb|AC093879.3| Homo sapiens BAC clone RP11-650J17 from 4, complete sequence
          Length = 216870

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    gcttgcaggagctcttgcct 247
              ||||||||||||||||||||
Sbjct: 143206 gcttgcaggagctcttgcct 143187



to top

>ref|NM_058988.1| Caenorhabditis elegans Y119C1B.10 (Y119C1B.10) mRNA, complete cds
          Length = 915

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  tacagactccaacaacatcg 56
           ||||||||||||||||||||
Sbjct: 633 tacagactccaacaacatcg 652



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 30       gggtacttacagactccaac 49
                ||||||||||||||||||||
Sbjct: 16334732 gggtacttacagactccaac 16334751



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 14      aaatacattattgcatgggt 33
               ||||||||||||||||||||
Sbjct: 2231601 aaatacattattgcatgggt 2231620



to top

>dbj|AK120753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006K02, full
            insert sequence
          Length = 4617

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 30   gggtacttacagactccaac 49
            ||||||||||||||||||||
Sbjct: 2472 gggtacttacagactccaac 2453



to top

>dbj|AK070681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063E02, full
            insert sequence
          Length = 3424

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 30   gggtacttacagactccaac 49
            ||||||||||||||||||||
Sbjct: 2277 gggtacttacagactccaac 2258



to top

>gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complete sequence
          Length = 190414

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  atgctccatctcatcagccg 366
            ||||||||||||||||||||
Sbjct: 1911 atgctccatctcatcagccg 1930


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,012,598
Number of Sequences: 3902068
Number of extensions: 4012598
Number of successful extensions: 115648
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115517
Number of HSP's gapped (non-prelim): 129
length of query: 586
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 563
effective length of database: 17,143,297,704
effective search space: 9651676607352
effective search space used: 9651676607352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top