ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19p04 |
|---|---|
| Clone Library Name | barley_pub |
>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 287 Score = 125 bits (313), Expect(2) = 6e-50 Identities = 65/95 (68%), Positives = 71/95 (74%) Frame = -3 Query: 566 YSRFFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQAXXXXX 387 YSRFFAVGLFRLLEL+NATEPT+LDKLCAALNINK+SVDRDLDVYRN+LSKLVQA Sbjct: 193 YSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLK 252 Query: 386 XXXXXXXXXXXXXXETPKPNEAVAKFDGSTYPLKH 282 ETPK NEAV KFDGS ++H Sbjct: 253 EYVEREKKKREERSETPKSNEAVTKFDGSLNSMRH 287 Score = 92.8 bits (229), Expect(2) = 6e-50 Identities = 44/49 (89%), Positives = 48/49 (97%) Frame = -2 Query: 717 EQYRADAQRMEEWARSQNGNLLVEFSSRDGEIESILKDISERAQGKGNF 571 EQYRADAQ+MEEWARSQNGN LVEFSS+DGEIE+ILKDISERAQGKG+F Sbjct: 143 EQYRADAQKMEEWARSQNGNSLVEFSSKDGEIEAILKDISERAQGKGSF 191
>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 300 Score = 108 bits (270), Expect(2) = 1e-36 Identities = 58/95 (61%), Positives = 67/95 (70%) Frame = -3 Query: 581 RETSGYSRFFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 402 +E YSRFFAVGLFRLLEL++AT+PTVLDKLCA+LNINKKSVDRDLDVYRNLLSKLVQA Sbjct: 194 KEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQA 253 Query: 401 XXXXXXXXXXXXXXXXXXXETPKPNEAVAKFDGST 297 ++ K NE ++K G T Sbjct: 254 KELLKEYVEREKKKQGERAQSQKANETISKCLGDT 288 Score = 65.1 bits (157), Expect(2) = 1e-36 Identities = 30/49 (61%), Positives = 39/49 (79%) Frame = -2 Query: 717 EQYRADAQRMEEWARSQNGNLLVEFSSRDGEIESILKDISERAQGKGNF 571 +QYR DAQ+MEEWARSQ LV+FSS++G+IE++LKDI+ RA K F Sbjct: 149 KQYRIDAQKMEEWARSQTSASLVDFSSKEGDIEAVLKDIAGRAGSKEGF 197
>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 293 Score = 100 bits (249), Expect(2) = 1e-36 Identities = 48/55 (87%), Positives = 53/55 (96%) Frame = -3 Query: 566 YSRFFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 402 YSR FAVGLFRLLEL+N T+PT+L+KLCAALN+NKKSVDRDLDVYRNLLSKLVQA Sbjct: 200 YSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQA 254 Score = 73.2 bits (178), Expect(2) = 1e-36 Identities = 33/49 (67%), Positives = 42/49 (85%) Frame = -2 Query: 717 EQYRADAQRMEEWARSQNGNLLVEFSSRDGEIESILKDISERAQGKGNF 571 EQYRADAQ++EEWAR+QN N LV+FSS++GEIE+I KDI++RA K F Sbjct: 150 EQYRADAQKLEEWARTQNANTLVDFSSKEGEIENIFKDIAQRAGTKDGF 198
>THF1_ANASP (Q8YZ41) Protein thf1| Length = 233 Score = 43.9 bits (102), Expect(2) = 2e-05 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 7/62 (11%) Frame = -3 Query: 566 YSRFFAVGLFRLLELSN-------ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLV 408 YSR FA+GLF LLE SN L + A L+++ +DL++YR+ L K+ Sbjct: 141 YSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLSDDKFSKDLELYRSNLDKMT 200 Query: 407 QA 402 QA Sbjct: 201 QA 202 Score = 23.9 bits (50), Expect(2) = 2e-05 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 6/52 (11%) Frame = -2 Query: 717 EQYRADAQRMEEWARSQNGNLLVEFSS------RDGEIESILKDISERAQGK 580 ++YR DA+R++ A+S N LV + S +D ++++ L+ I+ + K Sbjct: 89 QRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIANNSNFK 140
>THF1_ANAVT (Q3M4B2) Protein thf1| Length = 233 Score = 44.3 bits (103), Expect(2) = 4e-05 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 7/62 (11%) Frame = -3 Query: 566 YSRFFAVGLFRLLELSN-------ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLV 408 YSR FA+GLF LLE SN L + A L+++ + +DL++YR+ L K+ Sbjct: 141 YSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLSDDKLSKDLELYRSNLDKMT 200 Query: 407 QA 402 QA Sbjct: 201 QA 202 Score = 22.7 bits (47), Expect(2) = 4e-05 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = -2 Query: 717 EQYRADAQRMEEWARSQNGNLLVEFSSRDGEIE 619 ++YR DA+R++ A+S N LV + S+ ++ Sbjct: 89 QRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQ 121
>THF1_SYNP7 (Q31MY4) Protein thf1| Length = 254 Score = 38.1 bits (87), Expect = 0.027 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 7/62 (11%) Frame = -3 Query: 566 YSRFFAVGLFRLLELSN---ATEPTVLDKLCAAL----NINKKSVDRDLDVYRNLLSKLV 408 YSR FA+GLF LLE + +P L A+ ++ + +DLD+YR+ L K+ Sbjct: 142 YSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRSNLEKME 201 Query: 407 QA 402 QA Sbjct: 202 QA 203
>THF1_SYNP6 (Q5N664) Protein thf1| Length = 254 Score = 38.1 bits (87), Expect = 0.027 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 7/62 (11%) Frame = -3 Query: 566 YSRFFAVGLFRLLELSN---ATEPTVLDKLCAAL----NINKKSVDRDLDVYRNLLSKLV 408 YSR FA+GLF LLE + +P L A+ ++ + +DLD+YR+ L K+ Sbjct: 142 YSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRSNLEKME 201 Query: 407 QA 402 QA Sbjct: 202 QA 203
>THF1_SYNEL (Q8DJT8) Protein thf1| Length = 222 Score = 38.1 bits (87), Expect = 0.027 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Frame = -3 Query: 584 VRETSGYSRFFAVGLFRLLELSNATEPTV-----LDKLCAALNINKKSVDRDLDVYRNLL 420 + T YSR AVGL+ L+ A E T+ LD+L + + + V RDL++YR+ L Sbjct: 125 LNHTGKYSRLHAVGLYAFLQ-ELAGEVTIHLNETLDQLAPVIPLPIEKVKRDLELYRSNL 183 Query: 419 SKLVQA 402 K+ QA Sbjct: 184 DKINQA 189
>THF1_PROMM (Q7V7R3) Protein thf1| Length = 243 Score = 37.0 bits (84), Expect = 0.061 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 12/73 (16%) Frame = -3 Query: 584 VRETSG-----YSRFFAVGLFRLLELSNATEPT-------VLDKLCAALNINKKSVDRDL 441 +R T+G YSR AVGL LL + E + + +L ++ +K V++DL Sbjct: 129 LRNTAGSTTFHYSRLMAVGLLSLLASAQGDESSDPEKLSQIAHELSESVGFSKARVEKDL 188 Query: 440 DVYRNLLSKLVQA 402 ++Y++ L K+ QA Sbjct: 189 NLYKSNLEKMAQA 201
>THF1_SYNY3 (P73956) Protein thf1| Length = 240 Score = 35.4 bits (80), Expect = 0.18 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%) Frame = -3 Query: 593 GPRVRETSGYSRFFAVGLFRLL-----ELSNATEPT--VLDKLCAALNINKKSVDRDLDV 435 G R YSR FA+GL+ LL E+ + E L +L L+++ V +DLD+ Sbjct: 131 GIHQRHKFKYSRLFAIGLYTLLADQDPEVKDNDEKRQDYLTRLSELLDLSLDKVVKDLDL 190 Query: 434 YRNLLSKLVQ 405 YR+ L K+ Q Sbjct: 191 YRSNLEKVDQ 200
>THF1_GLOVI (Q7NKS7) Protein thf1| Length = 228 Score = 33.9 bits (76), Expect = 0.51 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 7/59 (11%) Frame = -3 Query: 566 YSRFFAVGLFRLLE-------LSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKL 411 YSR F++GL +LE +S L ++C L ++ V RDLD + ++L ++ Sbjct: 143 YSRLFSLGLANILEQAGRAAAMSEKDRLERLQQICTYLKLDYNRVKRDLDFFHSVLERI 201
>THF1_SYNS9 (Q3AY05) Protein thf1| Length = 215 Score = 33.5 bits (75), Expect = 0.67 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%) Frame = -3 Query: 593 GPRVRETSGYSRFFAVGLFRLLE--LSNATEPTVLD------KLCAALNINKKSVDRDLD 438 G ++ E S YSR A+G+ RL E +A +P D +L ALN + V++DL Sbjct: 116 GQKLGEGSHYSRLMAIGVLRLFEEAKGDADQPDEADLRKRCKELSTALNFPAERVEKDLS 175 Query: 437 VY 432 ++ Sbjct: 176 LF 177
>THF1_PROMA (Q7VC23) Protein thf1| Length = 214 Score = 33.5 bits (75), Expect = 0.67 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Frame = -3 Query: 566 YSRFFAVGLFRLLELSN-----ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKL 411 YSR A+G++ L+ N + ++ + AL +K V++D++ Y+N + K+ Sbjct: 137 YSRLHAIGIYELISNINEDKKEGDDKEIISECVEALGFSKDRVEKDINQYKNSMEKI 193
>CP3AF_CAVPO (Q64406) Cytochrome P450 3A15 (EC 1.14.14.1) (CYPIIIA15)| Length = 503 Score = 31.6 bits (70), Expect = 2.5 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +2 Query: 8 QIYDFYLVSTLPPDNSSYIVNEVKKTVHSNTEKEKLQNTNYCE 136 Q+Y+ +S P D+ + VKKT ++ E K Q N+ + Sbjct: 231 QLYEMLSISIFPRDSLKFFTKFVKKTKENHLESNKKQRVNFLQ 273
>THF1_SYNJB (P0C1D1) Protein thf1| Length = 239 Score = 30.8 bits (68), Expect = 4.3 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%) Frame = -3 Query: 566 YSRFFAVGLFRLLEL---SNATEPT-----VLDKLCAALNINKKSVDRDLDVYRNLLSKL 411 YSR AVGL+ E+ S EP L+ + + L + + V +DL++YR+ L ++ Sbjct: 140 YSRVLAVGLYTAYEVVAKSLYEEPEERTRRFLENVVSKLPFSTERVRKDLELYRSSLDRM 199 Query: 410 VQA 402 QA Sbjct: 200 KQA 202
>GFAP_HUMAN (P14136) Glial fibrillary acidic protein, astrocyte (GFAP)| Length = 432 Score = 30.8 bits (68), Expect = 4.3 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Frame = -2 Query: 687 EEWARSQNGNLLVEFSSRDGEIESILKDISERAQGKGNFRLQPVLCCWLVPFA*ALKCDG 508 E+ AR Q + VE ++ + LK+I + + + + + FA D Sbjct: 213 EQLARQQ---VHVELDVAKPDLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLT--DA 267 Query: 507 ANRTGQALRCSKHQ*K--KRG*RP*RLPQLTVEIGSSQGTS*GIRREGKEEESREIGDA 337 A R + LR +KH+ +R +L LT ++ S +GT+ + R+ +E+E R + +A Sbjct: 268 AARNAELLRQAKHEANDYRR-----QLQSLTCDLESLRGTNESLERQMREQEERHVREA 321
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 7.4 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -3 Query: 242 QILTVIH-LDSVENYRGHLWLLLAWCSTR 159 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 7.4 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -3 Query: 242 QILTVIH-LDSVENYRGHLWLLLAWCSTR 159 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 7.4 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -3 Query: 242 QILTVIH-LDSVENYRGHLWLLLAWCSTR 159 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>THF1_SYNJA (Q2JSQ3) Protein thf1| Length = 239 Score = 29.6 bits (65), Expect = 9.7 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%) Frame = -3 Query: 566 YSRFFAVGLFRLLEL---SNATEPT-----VLDKLCAALNINKKSVDRDLDVYRNLLSKL 411 YSR AVGL+ E S EP L+ + L + + V +DL++YR+ L +L Sbjct: 140 YSRVLAVGLYTAYEAVATSLYKEPEERTRHFLEDVIGNLPFSPERVKKDLELYRSNLDRL 199 Query: 410 VQA 402 QA Sbjct: 200 KQA 202
>CP3AE_CAVPO (Q64417) Cytochrome P450 3A14 (EC 1.14.14.1) (CYPIIIA14)| Length = 503 Score = 29.6 bits (65), Expect = 9.7 Identities = 12/43 (27%), Positives = 22/43 (51%) Frame = +2 Query: 8 QIYDFYLVSTLPPDNSSYIVNEVKKTVHSNTEKEKLQNTNYCE 136 Q+Y+ +S P D+ + VKKT ++ E K Q ++ + Sbjct: 231 QLYEMLSISIFPRDSLKFFTKFVKKTKENHLESNKKQRVDFLQ 273
>PCDBB_PANTR (Q5DRD8) Protocadherin beta 11 precursor (PCDH-beta11)| Length = 797 Score = 29.6 bits (65), Expect = 9.7 Identities = 28/109 (25%), Positives = 48/109 (44%) Frame = -3 Query: 329 NEAVAKFDGSTYPLKH*LNLSPEESLSG*QILTVIHLDSVENYRGHLWLLLAWCSTRRYK 150 N+ +F+ + Y +K PE S+ G ILTV D G + L+ S K Sbjct: 236 NDNSPEFEQAFYEVK-----IPENSILGSLILTVSAWDLDSGTNGEICYTLSHASEDIRK 290 Query: 149 KIQIIRSSWYFVISPSLCSNVPFSSLR*QYMKSYLVVMYSQDRNHIFGK 3 +I + S ++ L F ++ +SY +++ + DR +FGK Sbjct: 291 TFEINQKSGDITLTAPL----DFETI-----ESYSIIIQATDRGGLFGK 330 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,660,639 Number of Sequences: 219361 Number of extensions: 1922831 Number of successful extensions: 5344 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5226 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5336 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7309604013 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
