>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 1168

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 270 RRDVVPLIPPVSLPRLHPVPRREP-GLEPHVVGDP 371
           RRD  P  PP  LPR  P P   P GLEP V   P
Sbjct: 40  RRDCRPPPPPTGLPRGPPPPPSPPRGLEPPVASGP 74

>UVRA_STRAW (Q829X3) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
            subunit A)
          Length = 1009

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 159  VLAENLREEVVGVPTLHLGVELR---DEPGLQ*VAVVEEPRR 275
            V+AE   EEV GVPT H G  LR   D   +   A V+ PR+
Sbjct: 919  VVAEGTPEEVAGVPTSHTGKFLREILDADRISDAASVKAPRK 960

>CNGC5_ARATH (Q8RWS9) Probable cyclic nucleotide-gated ion channel 5 (AtCNGC5)|
           (Cyclic nucleotide- and calmodulin-regulated ion channel
           5)
          Length = 717

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 255 LRLTEARVRRAAQRQDEEWVHRRLLRADSRQ 163
           +RL E RV+R   R  E+W+H R+L  D R+
Sbjct: 424 IRLEEMRVKR---RDSEQWMHHRMLPQDLRE 451

>OXAA_BUCAI (P57131) Membrane protein oxaA|
          Length = 532

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 475 MLATYWALRWMPLALVKATPLMSSTTRVTALTGLRSP 585
           ML  Y+A+ W+P  L K T   SS    TA+ G +SP
Sbjct: 247 MLQQYFAVAWIPDNLGKNTIYTSSLDHDTAVIGYKSP 283

>YCF2_LYCES (P61242) Protein ycf2|
          Length = 2278

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 403  PFHCHTCVASWYSTPVTSFLTSPEMLATYWALRWMPLALVKA 528
            PFH  + ++S+Y      FL +P     YW  R+ P ++ KA
Sbjct: 1006 PFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRF-PFSVEKA 1046

>YCF2B_ATRBE (Q8S8U1) Protein ycf2|
          Length = 2291

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 403  PFHCHTCVASWYSTPVTSFLTSPEMLATYWALRWMPLALVKA 528
            PFH  + ++S+Y      FL +P     YW  R+ P ++ KA
Sbjct: 1013 PFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRF-PFSVEKA 1053

>YCF2A_ATRBE (Q8S8V2) Protein ycf2|
          Length = 2291

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 403  PFHCHTCVASWYSTPVTSFLTSPEMLATYWALRWMPLALVKA 528
            PFH  + ++S+Y      FL +P     YW  R+ P ++ KA
Sbjct: 1013 PFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRF-PFSVEKA 1053

>DHX34_MOUSE (Q9DBV3) Probable ATP-dependent RNA helicase DHX34 (EC 3.6.1.-) (DEAH|
            box protein 34)
          Length = 1145

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 292  SHRSPCPGFTQCPGANPALSRT*SAIPSMSPPFALPCPFHCHTCVASWYSTP 447
            +H + CP   + PG +P       A P  +   AL  P+HC  C   +  TP
Sbjct: 1088 AHENTCP---EAPGDDPGSEEAAPAPPQKTS--ALQRPYHCQVCGQDFLFTP 1134

>UVRA_STRCO (Q9Z507) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
            subunit A)
          Length = 1014

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 159  VLAENLREEVVGVPTLHLGVELRDEPGLQ*V---AVVEEPRR 275
            V+AE   E+V GVP  H G  LRD  G   V   A V  PR+
Sbjct: 919  VVAEGTPEQVAGVPASHTGKFLRDVLGADRVSDAAPVTRPRK 960

>YCF2_TOBAC (P09976) Protein ycf2|
          Length = 2280

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 403  PFHCHTCVASWYSTPVTSFLTSPEMLATYWALRWMPLALVKA 528
            PFH  + ++S+Y      FL +P     YW  R+ P ++ KA
Sbjct: 1005 PFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRF-PFSVEKA 1045

>WBS14_HUMAN (Q9NP71) Williams-Beuren syndrome chromosome region 14 protein (WS|
           basic-helix-loop-helix leucine zipper protein) (WS-bHLH)
           (Mlx interactor) (MLX-interacting protein-like)
          Length = 852

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 261 EEPRRDVVPLIPPVSLPRLH-PVPRREPGLEP 353
           E+P+  + P  PPV  P LH P P + PGLEP
Sbjct: 380 EDPKPRLPP--PPVPPPLLHYPPPAKVPGLEP 409

>SMC_MYCLE (Q9CBT5) Chromosome partition protein smc|
          Length = 1203

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -2

Query: 228 RAAQRQDEEWVHRRLLRADSRQERAAAVAGLQIQVWSLNTRLAYLT 91
           R  Q  D    HR  L A  RQ+R+ A+A ++ +V +L  RLA LT
Sbjct: 859 RLTQAVDLAARHRDAL-ATERQQRSVAIAAVRYEVNTLRVRLATLT 903

>DYHC_CAEEL (Q19020) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4568

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 114 SGSKLGFVVPPQLLHVLAENLREEVVGVPTLHLGVELRDEPGL 242
           SG++   + PP L      +++E +V V T H G+  RD+  L
Sbjct: 3   SGNESSIIQPPNLKTAAEGDVKEYIVQVVTSHFGLSPRDQTTL 45


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,374,318
Number of Sequences: 219361
Number of extensions: 1432212
Number of successful extensions: 5280
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5257
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)