ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19o08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ296273.1|HVU296273 Hordeum vulgare aba7 gene for stress re... 242 4e-61
2emb|X69817.1|HVABA7 H.vulgare ABA7 mRNA for ABA-induced protein 242 4e-61
3ref|XM_501986.1| Yarrowia lipolytica CLIB122, YALI0C18689g predi... 40 2.6
4emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 2.6
5gb|L23858.1|YSJATPASEA Yarrowia lipolytica ATPase (PAY4) gene, c... 40 2.6

>emb|AJ296273.1|HVU296273 Hordeum vulgare aba7 gene for stress responsive protein
          Length = 1841

 Score =  242 bits (122), Expect = 4e-61
 Identities = 185/205 (90%), Gaps = 5/205 (2%)
 Strand = Plus / Minus

                                                                        
Query: 3    cacatgtngctaacaaaaactcaaccgactatgactcgngcancgata--tacgctgcaa 60
            ||||||| |||||||||||||||||||||||| |||||  || ||||   ||||||||||
Sbjct: 1789 cacatgttgctaacaaaaactcaaccgactataactcgtacaacgatcagtacgctgcaa 1730

                                                                        
Query: 61   ggagcgcataatnttattcattncaatacaatacacacangtacgaaatgcaaatacgta 120
            |||||||||||| ||||||||| ||||||||||||||   |  ||||||||||||||| |
Sbjct: 1729 ggagcgcataattttattcattacaatacaatacaca--agatcgaaatgcaaatacg-a 1673

                                                                        
Query: 121  gctgccagcagcactaactccagggcttgntgcattgcttcatgaacggaagcaaggatt 180
            ||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||
Sbjct: 1672 gctgccagcagcactaactccagggcttgttgcatttgttcatgaacggaagcaaggatt 1613

                                     
Query: 181  ttggcgctccatcctatccaatgct 205
            |||||||||||||||| ||||||||
Sbjct: 1612 ttggcgctccatcctagccaatgct 1588



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>emb|X69817.1|HVABA7 H.vulgare ABA7 mRNA for ABA-induced protein
          Length = 841

 Score =  242 bits (122), Expect = 4e-61
 Identities = 185/205 (90%), Gaps = 5/205 (2%)
 Strand = Plus / Minus

                                                                       
Query: 3   cacatgtngctaacaaaaactcaaccgactatgactcgngcancgata--tacgctgcaa 60
           ||||||| |||||||||||||||||||||||| |||||  || ||||   ||||||||||
Sbjct: 789 cacatgttgctaacaaaaactcaaccgactataactcgtacaacgatcagtacgctgcaa 730

                                                                       
Query: 61  ggagcgcataatnttattcattncaatacaatacacacangtacgaaatgcaaatacgta 120
           |||||||||||| ||||||||| ||||||||||||||   |  ||||||||||||||| |
Sbjct: 729 ggagcgcataattttattcattacaatacaatacaca--agatcgaaatgcaaatacg-a 673

                                                                       
Query: 121 gctgccagcagcactaactccagggcttgntgcattgcttcatgaacggaagcaaggatt 180
           ||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||
Sbjct: 672 gctgccagcagcactaactccagggcttgttgcatttgttcatgaacggaagcaaggatt 613

                                    
Query: 181 ttggcgctccatcctatccaatgct 205
           |||||||||||||||| ||||||||
Sbjct: 612 ttggcgctccatcctagccaatgct 588



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>ref|XM_501986.1| Yarrowia lipolytica CLIB122, YALI0C18689g predicted mRNA
          Length = 3075

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 116  acgtagctgccagcagcact 135
            ||||||||||||||||||||
Sbjct: 1726 acgtagctgccagcagcact 1707



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 116     acgtagctgccagcagcact 135
               ||||||||||||||||||||
Sbjct: 2565734 acgtagctgccagcagcact 2565753



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>gb|L23858.1|YSJATPASEA Yarrowia lipolytica ATPase (PAY4) gene, complete cds
          Length = 4567

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 116  acgtagctgccagcagcact 135
            ||||||||||||||||||||
Sbjct: 2722 acgtagctgccagcagcact 2703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,123,403
Number of Sequences: 3902068
Number of extensions: 1123403
Number of successful extensions: 54286
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54264
Number of HSP's gapped (non-prelim): 16
length of query: 205
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 183
effective length of database: 17,147,199,772
effective search space: 3137937558276
effective search space used: 3137937558276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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