ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19n08 |
|---|---|
| Clone Library Name | barley_pub |
>PHSL_VICFA (P53536) Alpha-1,4 glucan phosphorylase, L isozyme, chloroplast| precursor (EC 2.4.1.1) (Starch phosphorylase L) Length = 1003 Score = 30.8 bits (68), Expect = 2.5 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Frame = -2 Query: 283 QHVDNRPGKSFRSFRFDTASILQSID--ASFLRT*DPDRSSTPVPLMCIDYGMMSSLVVN 110 Q V S SF DT SI+ SI A F P++ P + + +L++N Sbjct: 77 QEVQQEAKTSPSSFAPDTTSIVSSIKYHAEFTPLFSPEKFELPQAFIATAQSVRDALIIN 136 Query: 109 WN 104 WN Sbjct: 137 WN 138
>BRAF1_HUMAN (P15056) B-Raf proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (p94) (v-Raf murine sarcoma viral oncogene homolog B1) Length = 766 Score = 29.6 bits (65), Expect = 5.6 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -2 Query: 175 RSSTPVPLMCIDYGMMSSLVVNWNP*RHDVPSPHA 71 R ST VPLMC++Y + L V+ H +P A Sbjct: 271 RCSTEVPLMCVNYDQLDLLFVSKFFEHHPIPQEEA 305
>PHSL1_SOLTU (P04045) Alpha-1,4 glucan phosphorylase, L-1 isozyme, chloroplast| precursor (EC 2.4.1.1) (Starch phosphorylase L-1) Length = 966 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = -2 Query: 247 SFRFDTASILQSID--ASFLRT*DPDRSSTPVPLMCIDYGMMSSLVVNWN 104 SF D ASI SI A F P+R P + SL++NWN Sbjct: 71 SFAPDAASITSSIKYHAEFTPVFSPERFELPKAFFATAQSVRDSLLINWN 120
>NANEK_BRUSU (Q8FWN5) NanE/nanK bifunctional enzyme [Includes: Putative| N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) (ManNAc-6-P epimerase); Putative N-acetylmannosamine kinase (EC 2.7.1.60) (ManNAc kinase)] Length = 525 Score = 29.6 bits (65), Expect = 5.6 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 10/71 (14%) Frame = -2 Query: 490 MVAPFLTGLKAWIGTHRSPV------YQKSDTSTRGTV----WKAKNPSGVFVPVENPVI 341 M P G ++WIG S YQ++ + G V W + NP + +P + P+ Sbjct: 270 MTTPASVGSESWIGAIASLSADWQGRYQRAAIAVTGRVDGEIWSSLNPETLAIPPDYPLG 329 Query: 340 TRAGSDTQNPV 308 R G+ PV Sbjct: 330 RRMGAALGAPV 340
>NET4_PONPY (Q5RB89) Netrin-4 precursor| Length = 628 Score = 29.6 bits (65), Expect = 5.6 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 438 DRCVPIHAFRPVKNGAT 488 D+C+P+H FRPVK T Sbjct: 269 DQCIPVHGFRPVKAPGT 285
>NET4_HUMAN (Q9HB63) Netrin-4 precursor (Beta-netrin) (Hepar-derived| netrin-like protein) Length = 628 Score = 29.6 bits (65), Expect = 5.6 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 438 DRCVPIHAFRPVKNGAT 488 D+C+P+H FRPVK T Sbjct: 269 DQCIPVHGFRPVKAPGT 285
>NANEK_BRUME (Q8YBP2) NanE/nanK bifunctional enzyme [Includes: Putative| N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) (ManNAc-6-P epimerase); Putative N-acetylmannosamine kinase (EC 2.7.1.60) (ManNAc kinase)] Length = 518 Score = 29.6 bits (65), Expect = 5.6 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 10/71 (14%) Frame = -2 Query: 490 MVAPFLTGLKAWIGTHRSPV------YQKSDTSTRGTV----WKAKNPSGVFVPVENPVI 341 M P G ++WIG S YQ++ + G V W + NP + +P + P+ Sbjct: 263 MTTPASVGSESWIGAIASLSADWQGRYQRAAIAVTGRVDGEIWSSLNPETLAIPPDYPLG 322 Query: 340 TRAGSDTQNPV 308 R G+ PV Sbjct: 323 RRMGAALGAPV 333
>FLOT1_PANTR (Q7YR41) Flotillin-1| Length = 427 Score = 29.3 bits (64), Expect = 7.4 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +3 Query: 282 CVPDPALVITGFCVSDPALVITG 350 C P+ A+V++GFC S P +V G Sbjct: 5 CGPNEAMVVSGFCRSPPVMVAGG 27
>FLOT1_HUMAN (O75955) Flotillin-1| Length = 427 Score = 29.3 bits (64), Expect = 7.4 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +3 Query: 282 CVPDPALVITGFCVSDPALVITG 350 C P+ A+V++GFC S P +V G Sbjct: 5 CGPNEAMVVSGFCRSPPVMVAGG 27
>FLOT1_RAT (Q9Z1E1) Flotillin-1 (Reggie-2) (REG-2)| Length = 428 Score = 29.3 bits (64), Expect = 7.4 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +3 Query: 282 CVPDPALVITGFCVSDPALVITG 350 C P+ A+V++GFC S P +V G Sbjct: 5 CGPNEAMVVSGFCRSPPVMVAGG 27
>FLOT1_MOUSE (O08917) Flotillin-1| Length = 428 Score = 29.3 bits (64), Expect = 7.4 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +3 Query: 282 CVPDPALVITGFCVSDPALVITG 350 C P+ A+V++GFC S P +V G Sbjct: 5 CGPNEAMVVSGFCRSPPVMVAGG 27
>FUCO_CAEEL (P49713) Putative alpha-L-fucosidase precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase) Length = 482 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +3 Query: 33 NSSVLDYRYQLNTAWGDGTSWRHGFQLTTSDDIIP 137 NSS + + +N WG GT +HG +T SD P Sbjct: 231 NSSPVKDQVVVNDRWGTGTMGKHGGFMTYSDHYDP 265 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,002,384 Number of Sequences: 219361 Number of extensions: 1620970 Number of successful extensions: 5052 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4939 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5051 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
