ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19k17 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein Length = 1225 Score = 426 bits (215), Expect = e-116 Identities = 231/238 (97%) Strand = Plus / Minus Query: 1 attacatacaagtcctctgtctgggttcaggtgaatacagagcaagagcaagagtagcac 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1137 attacatacaagtcctctgtctgggttcaggtgaatacagagcaagagcaagagtagtac 1078 Query: 61 atcaaacttggaagacaaattggaattccacggtancacggacgatgggaagagagggcc 120 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 1077 atcaaacttggaagacaaattggaattccacggtaacagggacgatgggaagagagggcc 1018 Query: 121 gnccccatcagaaagaaattcantcagaacacgcagtttgctcttcgggttgggatggca 180 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1017 gcccccatcagaaagaaattcactcagaacacgcagtttgctcttcgggttgggatggca 958 Query: 181 tctttctttgtagcagcagcttangacttggtcttgaatgggatcgntctgatgacca 238 ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 957 tctttctttgtagcagcagcttaggacttggtcttgaatgggatcgctctgatgacca 900
>emb|AL772318.6| Mouse DNA sequence from clone RP23-77I17 on chromosome 4, complete sequence Length = 249534 Score = 46.1 bits (23), Expect = 0.050 Identities = 26/27 (96%) Strand = Plus / Minus Query: 16 tctgtctgggttcaggtgaatacagag 42 ||||||||||| ||||||||||||||| Sbjct: 225070 tctgtctgggtacaggtgaatacagag 225044
>gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210101 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 acatcaaacttggaagacaaa 79 ||||||||||||||||||||| Sbjct: 24157 acatcaaacttggaagacaaa 24177
>gb|AC153943.3| Mus musculus 10 BAC RP24-408O23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 171960 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 acatcaaacttggaagacaaa 79 ||||||||||||||||||||| Sbjct: 121183 acatcaaacttggaagacaaa 121203
>gb|AC007528.5| Homo sapiens 12 BAC RP11-473N11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188451 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 cagagcaagagcaagagtag 57 |||||||||||||||||||| Sbjct: 155822 cagagcaagagcaagagtag 155841
>emb|AL117377.18|HSJ1037B9 Human DNA sequence from clone RP5-1037B9 on chromosome 20p12.1-13 Contains STSs, GSSs and a putative CpG island, complete sequence Length = 82183 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cacatcaaacttggaagaca 77 |||||||||||||||||||| Sbjct: 72891 cacatcaaacttggaagaca 72872
>gb|AC182472.3| Pan troglodytes BAC clone CH251-394C9 from chromosome 19, complete sequence Length = 165954 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 catctttctttgtagcagcagctt 202 |||||||| ||||||||||||||| Sbjct: 108793 catctttcattgtagcagcagctt 108770
>gb|AC016493.14| Homo sapiens chromosome 18, clone RP11-58G13, complete sequence Length = 163936 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ttggaagacaaattggaatt 87 |||||||||||||||||||| Sbjct: 159892 ttggaagacaaattggaatt 159873
>gb|AC023577.6| Homo sapiens chromosome 18, clone RP11-645D5, complete sequence Length = 166503 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ttggaagacaaattggaatt 87 |||||||||||||||||||| Sbjct: 50150 ttggaagacaaattggaatt 50131
>gb|AC011500.7| Homo sapiens chromosome 19 clone CTB-60E11, complete sequence Length = 200430 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 catctttctttgtagcagcagctt 202 |||||||| ||||||||||||||| Sbjct: 139931 catctttcattgtagcagcagctt 139908 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,463,436 Number of Sequences: 3902068 Number of extensions: 2463436 Number of successful extensions: 41875 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41860 Number of HSP's gapped (non-prelim): 15 length of query: 241 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 219 effective length of database: 17,147,199,772 effective search space: 3755236750068 effective search space used: 3755236750068 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
