ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19k13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GDIR_ARATH (Q9SFC6) Rho GDP-dissociation inhibitor 1 (Rho GDI-1)... 102 2e-22
2GDIR_CAEEL (Q20496) Probable rho GDP-dissociation inhibitor (Rho... 59 3e-09
3GDIR_HUMAN (P52565) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)... 58 6e-09
4GDIR_MOUSE (Q99PT1) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)... 55 4e-08
5GDIR_BOVIN (P19803) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)... 55 4e-08
6GDIS_MOUSE (Q61599) Rho GDP-dissociation inhibitor 2 (Rho GDI 2)... 53 2e-07
7GDIS_HUMAN (P52566) Rho GDP-dissociation inhibitor 2 (Rho GDI 2)... 52 3e-07
8GDIS_BOVIN (Q9TU03) Rho GDP-dissociation inhibitor 2 (Rho GDI 2)... 52 3e-07
9GDIT_MOUSE (Q62160) Rho GDP-dissociation inhibitor 3 (Rho GDI 3)... 46 2e-05
10GDIR_YEAST (Q12434) Rho GDP-dissociation inhibitor (Rho GDI) 45 6e-05
11GDIT_HUMAN (Q99819) Rho GDP-dissociation inhibitor 3 (Rho GDI 3)... 41 6e-04
12GDIR_CAVPO (P80237) Rho GDP-dissociation inhibitor 1 (Rho GDI 1)... 33 0.17
13NORM_CHRVO (Q7NXN3) Probable multidrug resistance protein norM (... 29 2.4
14LIPE_AERHY (P40600) Extracellular lipase precursor (EC 3.1.1.3) ... 29 3.2
15VANB_PSEUH (O05617) Vanillate O-demethylase oxidoreductase (EC 1... 28 5.5
16BNI1_YEAST (P41832) Protein BNI1 (Synthetic lethal 39) 28 7.1
17GLT11_DROME (Q8IA41) Putative polypeptide N-acetylgalactosaminyl... 27 9.3

>GDIR_ARATH (Q9SFC6) Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1)|
          Length = 240

 Score =  102 bits (254), Expect = 2e-22
 Identities = 46/69 (66%), Positives = 57/69 (82%)
 Frame = -2

Query: 369 VRVEXQKVMLGTFSPQQEPYTYKAEEDSTPSGIFARGSYSARLKFVDDDGKVYLDMRYSF 190
           V+V+  K MLGTFSPQ EPY +   E++TPSG+FARGSYSAR KF+DDD K YL++ YSF
Sbjct: 172 VKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSF 231

Query: 189 EIRKDWPAL 163
           +IRK+WPAL
Sbjct: 232 DIRKEWPAL 240



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>GDIR_CAEEL (Q20496) Probable rho GDP-dissociation inhibitor (Rho GDI)|
          Length = 191

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 25/65 (38%), Positives = 39/65 (60%)
 Frame = -2

Query: 369 VRVEXQKVMLGTFSPQQEPYTYKAEEDSTPSGIFARGSYSARLKFVDDDGKVYLDMRYSF 190
           + VE +K M+G+++P+ E   YK+  +  PSG+  RG Y    K  DDD  VYLD +++ 
Sbjct: 127 ITVENEKYMMGSYAPKLEIQEYKSPNEEAPSGMMHRGKYKVYSKITDDDNNVYLDWQWTL 186

Query: 189 EIRKD 175
            I K+
Sbjct: 187 HITKE 191



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>GDIR_HUMAN (P52565) Rho GDP-dissociation inhibitor 1 (Rho GDI 1) (Rho-GDI|
           alpha)
          Length = 204

 Score = 57.8 bits (138), Expect = 6e-09
 Identities = 23/66 (34%), Positives = 39/66 (59%)
 Frame = -2

Query: 369 VRVEXQKVMLGTFSPQQEPYTYKAEEDSTPSGIFARGSYSARLKFVDDDGKVYLDMRYSF 190
           V+++    M+G++ P+ E Y +    +  P G+ ARGSYS + +F DDD   +L   ++ 
Sbjct: 137 VKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNL 196

Query: 189 EIRKDW 172
            I+KDW
Sbjct: 197 TIKKDW 202



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>GDIR_MOUSE (Q99PT1) Rho GDP-dissociation inhibitor 1 (Rho GDI 1) (Rho-GDI|
           alpha) (GDI-1)
          Length = 204

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 21/66 (31%), Positives = 39/66 (59%)
 Frame = -2

Query: 369 VRVEXQKVMLGTFSPQQEPYTYKAEEDSTPSGIFARGSYSARLKFVDDDGKVYLDMRYSF 190
           V+++    M+G++ P+ E Y +    +  P G+ ARGSY+ + +F DDD   +L   ++ 
Sbjct: 137 VKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNL 196

Query: 189 EIRKDW 172
            I+K+W
Sbjct: 197 TIKKEW 202



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>GDIR_BOVIN (P19803) Rho GDP-dissociation inhibitor 1 (Rho GDI 1) (Rho-GDI|
           alpha)
          Length = 204

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 21/66 (31%), Positives = 39/66 (59%)
 Frame = -2

Query: 369 VRVEXQKVMLGTFSPQQEPYTYKAEEDSTPSGIFARGSYSARLKFVDDDGKVYLDMRYSF 190
           V+++    M+G++ P+ E Y +    +  P G+ ARGSY+ + +F DDD   +L   ++ 
Sbjct: 137 VKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNL 196

Query: 189 EIRKDW 172
            I+K+W
Sbjct: 197 TIKKEW 202



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>GDIS_MOUSE (Q61599) Rho GDP-dissociation inhibitor 2 (Rho GDI 2) (Rho-GDI|
           beta) (D4)
          Length = 200

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 22/66 (33%), Positives = 38/66 (57%)
 Frame = -2

Query: 369 VRVEXQKVMLGTFSPQQEPYTYKAEEDSTPSGIFARGSYSARLKFVDDDGKVYLDMRYSF 190
           +RV+    M+G++ P+ E Y +    +  P G+ ARG+Y  +  F DDD + +L   ++ 
Sbjct: 133 MRVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNL 192

Query: 189 EIRKDW 172
            I+KDW
Sbjct: 193 AIKKDW 198



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>GDIS_HUMAN (P52566) Rho GDP-dissociation inhibitor 2 (Rho GDI 2) (Rho-GDI|
           beta) (Ly-GDI)
          Length = 201

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 21/66 (31%), Positives = 38/66 (57%)
 Frame = -2

Query: 369 VRVEXQKVMLGTFSPQQEPYTYKAEEDSTPSGIFARGSYSARLKFVDDDGKVYLDMRYSF 190
           V+V+    M+G++ P+ E Y +    +  P G+ ARG+Y  +  F DDD + +L   ++ 
Sbjct: 134 VKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNL 193

Query: 189 EIRKDW 172
            I+K+W
Sbjct: 194 SIKKEW 199



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>GDIS_BOVIN (Q9TU03) Rho GDP-dissociation inhibitor 2 (Rho GDI 2) (Rho-GDI|
           beta) (Ly-GDI) (D4-GDP-dissociation inhibitor) (D4-GDI)
          Length = 200

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 22/66 (33%), Positives = 37/66 (56%)
 Frame = -2

Query: 369 VRVEXQKVMLGTFSPQQEPYTYKAEEDSTPSGIFARGSYSARLKFVDDDGKVYLDMRYSF 190
           V+V+    M+G++ P+ E Y +    +  P G+ ARG+Y  +  F DDD   +L   ++ 
Sbjct: 133 VKVDKATFMVGSYGPRPEEYEFLTPIEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNL 192

Query: 189 EIRKDW 172
            I+KDW
Sbjct: 193 SIKKDW 198



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>GDIT_MOUSE (Q62160) Rho GDP-dissociation inhibitor 3 (Rho GDI 3) (Rho-GDI|
           gamma) (Rho-GDI2)
          Length = 225

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = -2

Query: 369 VRVEXQKVMLGTFSPQQEPYTYKAEEDSTPSGIFARGSYSARLKFVDDDGKVYLDMRYSF 190
           +RV+    M+G++ P+ + Y +    +  P G  ARG Y  R  F DDD   +L   +  
Sbjct: 158 LRVDKAIFMVGSYGPRAQEYEFVTSVEEAPRGALARGLYVVRSLFTDDDRLNHLSWEWHL 217

Query: 189 EIRKDW 172
            + +DW
Sbjct: 218 HVCQDW 223



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>GDIR_YEAST (Q12434) Rho GDP-dissociation inhibitor (Rho GDI)|
          Length = 202

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = -2

Query: 342 LGTFSPQQEP---YTYKAEEDSTPSGIFARGSYSARLKFVDDDGKVYLDMRYSFEIRK 178
           LG+++P  +    Y  +  E   PSG  ARG+YSA  KF+DDD   +L + +  EI K
Sbjct: 144 LGSYAPNTKTKPFYEVELPESEAPSGFLARGNYSAVSKFIDDDKTNHLTLNWGVEIVK 201



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>GDIT_HUMAN (Q99819) Rho GDP-dissociation inhibitor 3 (Rho GDI 3) (Rho-GDI|
           gamma)
          Length = 225

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = -2

Query: 369 VRVEXQKVMLGTFSPQQEPYTYKAEEDSTPSGIFARGSYSARLKFVDDDGKVYLDMRYSF 190
           +RV+    M+G++ P  + Y +    +  P G   RG Y     F DDD   +L   +  
Sbjct: 158 LRVDKTVYMVGSYGPSAQEYEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGL 217

Query: 189 EIRKDW 172
            I +DW
Sbjct: 218 CICQDW 223



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>GDIR_CAVPO (P80237) Rho GDP-dissociation inhibitor 1 (Rho GDI 1) (Rho-GDI|
           alpha) (Fragments)
          Length = 111

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -2

Query: 369 VRVEXQKVMLGTFSPQQEPYTYKAEEDSTPSGIFARGSYSARLKFVDDDGKVYLDMRYSF 190
           V+++    M+G++ P+ E Y +    +  P G+ AR        F DDD   +L    + 
Sbjct: 56  VKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLAR--------FTDDDKTDHLSGERNL 107

Query: 189 EIRK 178
            I+K
Sbjct: 108 TIKK 111



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>NORM_CHRVO (Q7NXN3) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 465

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 220 PIIIHKL*SSRIGAPRKDAARGAIF---FGLVRVGLLLRAECPQHHLLXL 360
           PI+ H L S    A  +DAA+G  F    G +  GL+L  E P  H L L
Sbjct: 79  PILSHHLGSRDRRAFSRDAAQGLWFGLMLGALGAGLMLLLEAPLRHWLHL 128



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>LIPE_AERHY (P40600) Extracellular lipase precursor (EC 3.1.1.3)|
           (Triacylglycerol lipase)
          Length = 684

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +1

Query: 262 PRKDAARGAIFFGLVRVGLLLRAECPQHH 348
           P  DA RGAI     R    LR  CPQHH
Sbjct: 425 PAADAGRGAI-----RADACLRQGCPQHH 448



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>VANB_PSEUH (O05617) Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)|
           (Vanillate degradation ferredoxin-like protein)
          Length = 317

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 127 VSQESLLLLLIRQGRPVLPDLKAVPHVQVHLP 222
           V+Q+ + L  +R    +LP ++A  HV VHLP
Sbjct: 12  VAQDIISLEFVRADGGLLPPVEAGAHVDVHLP 43



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>BNI1_YEAST (P41832) Protein BNI1 (Synthetic lethal 39)|
          Length = 1953

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 294 EDSTPSGIFARGSYSARLKFVDDDGKVYLDM 202
           +  + S + ++GS +   KF   DGK+YL+M
Sbjct: 145 QSHSASSLLSQGSLTNLSKFTTPDGKIYLEM 175



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>GLT11_DROME (Q8IA41) Putative polypeptide N-acetylgalactosaminyltransferase 11|
           (EC 2.4.1.41) (Protein-UDP
           acetylgalactosaminyltransferase 11)
           (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 11) (pp-GaNTase 11)
          Length = 557

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +1

Query: 7   TIIINIT*QKSYQHPQTQPKLNIHLIFQTNPC*VLLLTDQVSQESLLLLLIRQGRPVLPD 186
           T+ ++I      +HP T  +    +I QT+P    LL +        ++L+  G P   D
Sbjct: 109 TVTVSIVIAIQQEHPHTLLRGIYSVITQTSP---YLLKE--------IVLVHDGHP---D 154

Query: 187 LKAVPHVQVHLPIII 231
           L  + H+   LPI+I
Sbjct: 155 LDLIRHIHHKLPIVI 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,622,495
Number of Sequences: 219361
Number of extensions: 880534
Number of successful extensions: 1856
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1856
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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