ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19j18 |
|---|---|
| Clone Library Name | barley_pub |
>Y401_BUCAP (Q8K9D9) Hypothetical protein BUsg401| Length = 219 Score = 32.3 bits (72), Expect = 1.2 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Frame = -2 Query: 562 WSACLVLSRSGDGAGMGIEHLSSLPHLEVETNCCHAIPEEVEAVEGSIEKAIVLHP--NR 389 W+A ++ G+ + ++ LE E C E ++ S+ I L P N+ Sbjct: 84 WTAKHIVITGGEPCLYNLLEITK--ELEKEDYKCQIETSGTELIKCSLNTWITLSPKINK 141 Query: 388 QTLQLCLRRKNEDKMFRDDKVRQKELKREDVFYL 287 +TL+ + R NE ++ LK+ED+FYL Sbjct: 142 KTLKTSILRSNE--------IKYPVLKKEDLFYL 167
>RPOC2_ANASP (P22705) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1355 Score = 30.8 bits (68), Expect = 3.6 Identities = 24/84 (28%), Positives = 33/84 (39%) Frame = +3 Query: 24 KMSPTLRKATRQTEHGFDAHQENPLSVRVLEHRLWDEKPDAPNYLITNTMQL*RYLEHVV 203 K+ LR T +T HG DA + +LE R + AP + HV Sbjct: 363 KLPRKLRTRTHRTRHGEDALFVESNGIMILEPRKEGSETPAPQEI------------HVT 410 Query: 204 QAGITKIDGGKSQCRGQTIERVAL 275 Q I G+ +GQ + VAL Sbjct: 411 QGSTIYIVDGQQVKKGQLLAEVAL 434
>MUTS_XANAC (Q8PMX2) DNA mismatch repair protein mutS| Length = 902 Score = 30.4 bits (67), Expect = 4.7 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Frame = -2 Query: 499 SSLPHLEVETNCCHAIPEEVEAVEGSIEKAIVLHPNRQTLQLCLRRKNEDKMFRDDKV-- 326 S + L+V N H +E +G EKA + + RQTL R E+ +DKV Sbjct: 498 SGIATLKVGYNRVHGY--YIEISKGQAEKAPLHYSRRQTLTNAERYITEELKSFEDKVLS 555 Query: 325 -RQKELKREDVFY 290 R++ L RE + Y Sbjct: 556 ARERSLSREKLLY 568
>SHOC2_MOUSE (O88520) Leucine-rich repeat protein SHOC-2 (Ras-binding protein| Sur-8) Length = 582 Score = 30.4 bits (67), Expect = 4.7 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -2 Query: 514 GIEHLSSLPHLEVETNCCHAIPEEVEAVEGSIEKAIVLHPNRQTL 380 GI HL++L HL + N +PEE+ +E E + +PN +L Sbjct: 489 GIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSL 533
>SHOC2_HUMAN (Q9UQ13) Leucine-rich repeat protein SHOC-2 (Ras-binding protein| Sur-8) Length = 582 Score = 30.4 bits (67), Expect = 4.7 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -2 Query: 514 GIEHLSSLPHLEVETNCCHAIPEEVEAVEGSIEKAIVLHPNRQTL 380 GI HL++L HL + N +PEE+ +E E + +PN +L Sbjct: 489 GIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSL 533
>MUTS_XANCP (Q8PBB5) DNA mismatch repair protein mutS| Length = 891 Score = 30.4 bits (67), Expect = 4.7 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Frame = -2 Query: 499 SSLPHLEVETNCCHAIPEEVEAVEGSIEKAIVLHPNRQTLQLCLRRKNEDKMFRDDKV-- 326 S + L+V N H +E +G EKA + + RQTL R E+ +DKV Sbjct: 487 SGIATLKVGYNRVHGY--YIEISKGQAEKAPLHYSRRQTLTNAERYITEELKSFEDKVLS 544 Query: 325 -RQKELKREDVFY 290 R++ L RE + Y Sbjct: 545 ARERSLSREKLLY 557
>MUTS_XANOR (Q5H2C5) DNA mismatch repair protein mutS| Length = 873 Score = 30.4 bits (67), Expect = 4.7 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Frame = -2 Query: 499 SSLPHLEVETNCCHAIPEEVEAVEGSIEKAIVLHPNRQTLQLCLRRKNEDKMFRDDKV-- 326 S + L+V N H +E +G EKA + + RQTL R E+ +DKV Sbjct: 469 SGIATLKVGYNRVHGY--YIEISKGQAEKAPLHYSRRQTLTNAERYITEELKTFEDKVLS 526 Query: 325 -RQKELKREDVFY 290 R++ L RE + Y Sbjct: 527 ARERSLSREKLLY 539
>MUTS_XANC8 (Q4US90) DNA mismatch repair protein mutS| Length = 873 Score = 30.4 bits (67), Expect = 4.7 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Frame = -2 Query: 499 SSLPHLEVETNCCHAIPEEVEAVEGSIEKAIVLHPNRQTLQLCLRRKNEDKMFRDDKV-- 326 S + L+V N H +E +G EKA + + RQTL R E+ +DKV Sbjct: 469 SGIATLKVGYNRVHGY--YIEISKGQAEKAPLHYSRRQTLTNAERYITEELKSFEDKVLS 526 Query: 325 -RQKELKREDVFY 290 R++ L RE + Y Sbjct: 527 ARERSLSREKLLY 539
>MUTS_XANC5 (Q3BVY0) DNA mismatch repair protein mutS| Length = 873 Score = 30.4 bits (67), Expect = 4.7 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Frame = -2 Query: 499 SSLPHLEVETNCCHAIPEEVEAVEGSIEKAIVLHPNRQTLQLCLRRKNEDKMFRDDKV-- 326 S + L+V N H +E +G EKA + + RQTL R E+ +DKV Sbjct: 469 SGIATLKVGYNRVHGY--YIEISKGQAEKAPLHYSRRQTLTNAERYITEELKSFEDKVLS 526 Query: 325 -RQKELKREDVFY 290 R++ L RE + Y Sbjct: 527 ARERSLSREKLLY 539
>BCSA_SALTY (Q93IN2) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 874 Score = 29.6 bits (65), Expect = 8.0 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = -3 Query: 486 TSRWKLIVVMQFRRRWRLWR--VPLKKQLSCIPTVKLFNSVFVEKMKI 349 T W ++V+ F+ W L R VPL K++S PTV +F + E + + Sbjct: 241 TYAWIVLVLGYFQVVWPLNRQPVPLPKEMSQWPTVDIFVPTYNEDLNV 288
>BCSA_SALTI (Q8Z291) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 874 Score = 29.6 bits (65), Expect = 8.0 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = -3 Query: 486 TSRWKLIVVMQFRRRWRLWR--VPLKKQLSCIPTVKLFNSVFVEKMKI 349 T W ++V+ F+ W L R VPL K++S PTV +F + E + + Sbjct: 241 TYAWIVLVLGYFQVVWPLNRQPVPLPKEMSQWPTVDIFVPTYNEDLNV 288 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,420,284 Number of Sequences: 219361 Number of extensions: 2066923 Number of successful extensions: 6212 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5945 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6210 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
