| Clone Name | rbasd19j14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BC029142.1| Homo sapiens, clone IMAGE:5196881, mRNA Length = 1061 Score = 666 bits (336), Expect = 0.0 Identities = 407/424 (95%), Gaps = 5/424 (1%) Strand = Plus / Minus Query: 4 cttcctggtcgtgcttctttacaaggnaaaagctctcctaaatgctcccaggcatatttt 63 |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 869 cttcctgg-cgtgcttctttacaagg-aaaagctctcctaaatgctcccaggcttatttt 812 Query: 64 t-gcgatacaggctacaaacacttttacat-ctataggatctgcctgctactcaaaagta 121 | ||||||||| || |||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 811 ttgcgatacagactgcaaacacttttacagactataggatctgcctgctactcaaa-gta 753 Query: 122 ccgcggacacacatatttacagatccacaagtaccgggcatgggctcctgcgcctctaaa 181 ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct: 752 ccgcggacacacatatttacagatccacaagtaccgggcatggactcctgcatctctaaa 693 Query: 182 acttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctattactt 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 692 acttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctattactt 633 Query: 242 gattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagctgcgg 301 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 632 gattgtcctggtttactatcggtaatctgtggatcttcttcctgagcatcagagctgcgg 573 Query: 302 catcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaa 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 572 catcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaa 513 Query: 362 tcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacgacgaccccgacac 421 |||||||| ||| |||||||||||||||| || ||||||||||||||||||||||||||| Sbjct: 512 tcttcgtctttggcccatgtgaagccctcacgtgatcgctcttgacgacgaccccgacac 453 Query: 422 atcg 425 |||| Sbjct: 452 atcg 449
>gb|AF498268.1| Haynaldia villosa clone kong28 mRNA Length = 1474 Score = 644 bits (325), Expect = 0.0 Identities = 395/413 (95%), Gaps = 4/413 (0%) Strand = Plus / Plus Query: 13 cgtgcttctttacaaggnaaaagctctcctaaatgctcccaggcatatttttgcgataca 72 ||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||||| Sbjct: 49 cgtgcttctttacaagg-aaaagctctcctaaaagttcccaggcttatttttgcgataca 107 Query: 73 ggctacaaacacttttacat-ctataggatctgcctgctactcaaaagtaccgcggacac 131 |||||||| |||||||||| |||||| |||||||||||||||||||| ||||||||||| Sbjct: 108 ggctacaa-cacttttacagactatag-atctgcctgctactcaaaagcaccgcggacac 165 Query: 132 acatatttacagatccacaagtaccgggcatgggctcctgcgcctctaaaacttcagcat 191 ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct: 166 acatatttacagatccacaagtaccgggcatggactcctgcatctctaaaacttcagcat 225 Query: 192 ggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctattacttgattgtcctg 251 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 226 ggcctccaacgcgcgaagaacgtcgtcgcgggtaactatacctattacttgattgtcctg 285 Query: 252 gtttactatcggtaatctgtggatcttcttcttgagcatcagagctgcggcatcggtcac 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 286 gtttactatcggtaatctgtggatcttcttcttgagcatcagagctgcggcatcggtcac 345 Query: 312 tgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtcct 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 346 tgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtctt 405 Query: 372 tgacccatgtgaagccctcgcgcgatcgctcttgacgacgaccccgacacatc 424 || |||||||||||||||||||| ||||||||| |||||||||||||| |||| Sbjct: 406 tggcccatgtgaagccctcgcgcaatcgctcttcacgacgaccccgacgcatc 458
>ref|XM_507550.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 916 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 235 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 236 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 295 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 296 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 355 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 356 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 409 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>ref|XM_507549.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 1002 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 235 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 236 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 295 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 296 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 355 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 356 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 409 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>ref|XM_507051.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 956 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 235 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 696 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 637 Query: 236 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 295 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 636 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 577 Query: 296 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 355 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 576 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 517 Query: 356 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 409 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 516 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 463
>ref|XM_468415.1| Oryza sativa (japonica cultivar-group), mRNA Length = 833 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 235 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 236 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 295 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 296 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 355 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 356 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 409 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449
>gb|AY346465.1| Oryza sativa (indica cultivar-group) putative brown planthopper susceptibility protein Hd002A mRNA, complete cds Length = 1265 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 235 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 1114 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 1055 Query: 236 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 295 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 1054 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 995 Query: 296 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 355 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 994 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 935 Query: 356 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 409 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 934 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 881
>dbj|AK104947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G08, full insert sequence Length = 833 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 235 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 236 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 295 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 296 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 355 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 356 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 409 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449
>dbj|AK104525.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H03, full insert sequence Length = 994 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 235 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 236 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 295 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 296 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 355 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 356 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 409 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449
>dbj|AK104684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B10, full insert sequence Length = 916 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 235 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 236 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 295 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 296 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 355 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 356 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 409 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>dbj|AK104103.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B08, full insert sequence Length = 1002 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 235 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 236 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 295 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 296 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 355 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 356 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 409 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>dbj|AK071580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106O04, full insert sequence Length = 1514 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 235 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 683 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 624 Query: 236 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 295 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 623 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 564 Query: 296 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 355 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 563 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 504 Query: 356 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 409 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 503 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 450
>dbj|AK065134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P24, full insert sequence Length = 955 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 235 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 695 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 636 Query: 236 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 295 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 635 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 576 Query: 296 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 355 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 575 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 516 Query: 356 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 409 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 515 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 462
>gb|AY346466.1| Oryza sativa (indica cultivar-group) brown planthopper-induced resistance protein 1 (Bi1) mRNA, complete cds Length = 1098 Score = 196 bits (99), Expect = 4e-47 Identities = 202/235 (85%), Gaps = 1/235 (0%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 235 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 949 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 890 Query: 236 ttacttgattgtcctggtttactatcggtaatctgtggatc-ttcttcttgagcatcaga 294 | ||||| ||||||| ||||| || ||||||||||||||| |||||||| ||||||||| Sbjct: 889 tcacttgtctgtcctgatttacaattggtaatctgtggatccttcttctttagcatcaga 830 Query: 295 gctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcaca 354 ||||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| Sbjct: 829 gctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcact 770 Query: 355 tctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 409 ||||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 769 tctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 715
>gb|AY112171.1| Zea mays CL11049_1 mRNA sequence Length = 803 Score = 145 bits (73), Expect = 1e-31 Identities = 203/248 (81%) Strand = Plus / Minus Query: 177 ctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctat 236 ||||| ||||| |||| | |||||| |||||||||| ||| ||||||||||||||||||| Sbjct: 594 ctaaatcttcaacatgccttccaacacgcgaagaacatcagcgcgggtaactatacctat 535 Query: 237 tacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagc 296 ||| |||||||||||| | ||||||||||||||||||||||||||||| ||| | Sbjct: 534 tacnnnnncgtcctggtttacaactggtaatctgtggatcttcttcttgagcatgagaac 475 Query: 297 tgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatc 356 || ||||| |||| ||||| || | ||||| ||||| ||||||||||||||||| || Sbjct: 474 agcagcatccatcacggttttgtcagacgatagtgtgatagctggagatgtcatcacttc 415 Query: 357 tgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacgacgacccc 416 | ||||||||| | |||||||| || || || || || ||| ||||||||| ||||| Sbjct: 414 cgatatcttcgtcttggacccatgagaggctcttgcccggtcgttcttgacgatcacccc 355 Query: 417 gacacatc 424 ||| |||| Sbjct: 354 gacgcatc 347
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 231 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 290 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 35111790 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 35111731 Query: 291 cagagctgcggcatc 305 ||||||||| ||||| Sbjct: 35111730 cagagctgccgcatc 35111716 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 234 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 35111977 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 35111919 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 310 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 369 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 35111621 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 35111562 Query: 370 cttgac 375 ||||| Sbjct: 35111561 tttgac 35111556
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 231 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 290 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 7146 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 7087 Query: 291 cagagctgcggcatc 305 ||||||||| ||||| Sbjct: 7086 cagagctgccgcatc 7072 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 234 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 7333 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 7275 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 310 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 369 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 6977 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 6918 Query: 370 cttgac 375 ||||| Sbjct: 6917 tttgac 6912
>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C12 Length = 103973 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 231 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 290 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 84953 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 84894 Query: 291 cagagctgcggcatc 305 ||||||||| ||||| Sbjct: 84893 cagagctgccgcatc 84879 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 234 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 85140 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 85082 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 310 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 369 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 84784 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 84725 Query: 370 cttgac 375 ||||| Sbjct: 84724 tttgac 84719
>dbj|AK068163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135B04, full insert sequence Length = 4217 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 231 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 290 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 2400 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 2459 Query: 291 cagagctgcggcatc 305 ||||||||| ||||| Sbjct: 2460 cagagctgccgcatc 2474 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 176 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 234 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 2213 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 2271 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 310 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 369 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 2569 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 2628 Query: 370 cttgac 375 ||||| Sbjct: 2629 tttgac 2634
>gb|AC037492.5|AC037492 Homo sapiens chromosome 8, clone RP11-38H17, complete sequence Length = 168278 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 79 aaacacttttacatctatagga 100 |||||||||||||||||||||| Sbjct: 101167 aaacacttttacatctatagga 101188
>ref|XM_841417.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.4760) partial mRNA Length = 3087 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tctgtggatcttcttcttga 286 |||||||||||||||||||| Sbjct: 1378 tctgtggatcttcttcttga 1397
>gb|AC018738.4| Homo sapiens BAC clone RP11-419H23 from 2, complete sequence Length = 178530 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcttcttgagcatcagagct 297 |||||||||||||||||||| Sbjct: 171536 tcttcttgagcatcagagct 171517
>gb|AF131950.1| Human papillomavirus candHPV85, complete genome Length = 7812 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 tttgcgatacaggctacaaa 81 |||||||||||||||||||| Sbjct: 3734 tttgcgatacaggctacaaa 3753
>gb|AC008750.9| Homo sapiens chromosome 19 clone CTD-2616J11, complete sequence Length = 143045 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 gctctcctaaatgctcccag 54 |||||||||||||||||||| Sbjct: 76812 gctctcctaaatgctcccag 76793
>gb|AE004451.1| Pseudomonas aeruginosa PAO1, section 12 of 529 of the complete genome Length = 10700 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 192 ggcctccaacgcgcgaagaacgtcatcg 219 ||||| ||| |||||||||||||||||| Sbjct: 2227 ggcctgcaaggcgcgaagaacgtcatcg 2200
>dbj|AP002347.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2514A21, complete sequence Length = 130977 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 acatatttacagatccacaa 151 |||||||||||||||||||| Sbjct: 119986 acatatttacagatccacaa 119967
>dbj|AP000790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736I10, complete sequence Length = 176944 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 acatatttacagatccacaa 151 |||||||||||||||||||| Sbjct: 30122 acatatttacagatccacaa 30103 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,069,011 Number of Sequences: 3902068 Number of extensions: 3069011 Number of successful extensions: 53055 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53004 Number of HSP's gapped (non-prelim): 43 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)