ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18o21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GPDA_CLOTE (Q895X7) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 33 0.91
2CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor 30 4.5
3CTR1_HUMAN (P30825) High-affinity cationic amino acid transporte... 30 5.9
4PHO85_YARLI (Q6C7U8) Negative regulator of the PHO system (EC 2.... 30 7.7
5PHO85_DEBHA (Q6BRY2) Negative regulator of the PHO system (EC 2.... 30 7.7

>GPDA_CLOTE (Q895X7) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 349

 Score = 32.7 bits (73), Expect = 0.91
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -2

Query: 586 TLLKGRNAWYGQMLAKGELRLDMGDSIKGKGMI-QGISAVGAFFELLSQPSLSVLHPEEN 410
           T +  RN   G ++ KG   L M ++I+  GM+ +GI A  AF+EL  +  +S+      
Sbjct: 268 TSMHSRNRRAGLLIGKG---LSMEEAIEEVGMVVEGIKACKAFYELKEKLKVSM------ 318

Query: 409 KQVAPAXLCPILKRLYRILIKRE 341
                    PI   LYR+L + E
Sbjct: 319 ---------PITDALYRVLFQGE 332



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>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 422 PRGKQASGSCXTVPNSEEAL*NSDKKGAPGXRHPPSPEGRNHERPS*EDRDGAEP 258
           P+G+         P +     N  ++GAPG R P  P G   E+    +R G  P
Sbjct: 459 PKGEDGKDGSPGEPGANGVPGNPGERGAPGFRGPAGPNGAPGEKGPAGERGGPGP 513



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>CTR1_HUMAN (P30825) High-affinity cationic amino acid transporter 1 (CAT-1)|
           (CAT1) (System Y+ basic amino acid transporter)
           (Ecotropic retroviral leukemia receptor homolog) (ERR)
           (Ecotropic retrovirus receptor homolog)
          Length = 629

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +1

Query: 235 GETGGRMCGSAPSRSSHEGRSWFRPSGLGGCLXPGAPFLSEF--YKASSELGTVXQEPLA 408
           G T GR+C +  ++    G   F P G  G L   A     F  +   +  G   + P  
Sbjct: 225 GNTSGRLCLNNDTKEGKPGVGGFMPFGFSGVLSGAATCFYAFVGFDCIATTGEEVKNPQK 284

Query: 409 CFPLGV 426
             P+G+
Sbjct: 285 AIPVGI 290



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>PHO85_YARLI (Q6C7U8) Negative regulator of the PHO system (EC 2.7.11.22)|
           (Serine/threonine-protein kinase PHO85)
          Length = 294

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 595 TYVTLLKGRNAWYGQMLAKGELRLD 521
           TY T+ KGRN   GQ++A  E+ LD
Sbjct: 17  TYATVYKGRNRTTGQLVALKEINLD 41



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>PHO85_DEBHA (Q6BRY2) Negative regulator of the PHO system (EC 2.7.11.22)|
           (Serine/threonine-protein kinase PHO85)
          Length = 330

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 595 TYVTLLKGRNAWYGQMLAKGELRLD 521
           TY T+ KGRN   GQ++A  E+ LD
Sbjct: 18  TYATVYKGRNRTNGQLVALKEINLD 42


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,188,144
Number of Sequences: 219361
Number of extensions: 2214642
Number of successful extensions: 6057
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6050
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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