ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19c07 |
|---|---|
| Clone Library Name | barley_pub |
>IF3A_MAIZE (Q9XHR2) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) Length = 962 Score = 281 bits (719), Expect = 1e-75 Identities = 148/193 (76%), Positives = 167/193 (86%) Frame = -1 Query: 595 KGVISCASQEVKDLYNLMEHEFLPLDLASKVQPLLSKISTIGGKLSAASSVPEIRLSQYQ 416 KGV+SCASQEV+DLYNL+EH FLPLDLASKVQPLL KIS IGGKLS+ASSVPE++LSQY Sbjct: 382 KGVLSCASQEVRDLYNLLEHRFLPLDLASKVQPLLLKISKIGGKLSSASSVPEVKLSQYI 441 Query: 415 SALEKLTALRVLQQASRIFQSMKIDMLSRMIPFFDFNVVEKIAVDAVKHNFVAMKVNHLA 236 SALEKLT LRVLQQAS IF+S+KIDMLSRMIPFFDF+VVEKI+VDA K NFVA+KV+HL+ Sbjct: 442 SALEKLTTLRVLQQASCIFKSIKIDMLSRMIPFFDFSVVEKISVDAAKQNFVAIKVDHLS 501 Query: 235 GAVHFGNMDIESDVLSSHLSVLADSLNKARSLIHPPVYKPSKPSENLASLPGVVEKEHRR 56 G V FG +DIESD LS HLSVLADSLNKAR I PPV KPSK E+L SL +VE EH+R Sbjct: 502 GVVQFGTVDIESDGLSDHLSVLADSLNKARIHICPPVKKPSKLGESLISLAAIVENEHKR 561 Query: 55 LLARKSIXKNVKK 17 LLARKSI + K+ Sbjct: 562 LLARKSIIEKRKE 574
>IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (p114) Length = 987 Score = 232 bits (592), Expect = 5e-61 Identities = 116/193 (60%), Positives = 156/193 (80%) Frame = -1 Query: 595 KGVISCASQEVKDLYNLMEHEFLPLDLASKVQPLLSKISTIGGKLSAASSVPEIRLSQYQ 416 KGV+SCASQEVKDL++++EHEF PLDL SK+QPLL KIS GGKLS+A S+PE++LSQY Sbjct: 384 KGVLSCASQEVKDLFHVLEHEFHPLDLGSKIQPLLEKISKSGGKLSSAPSLPEVQLSQYV 443 Query: 415 SALEKLTALRVLQQASRIFQSMKIDMLSRMIPFFDFNVVEKIAVDAVKHNFVAMKVNHLA 236 +LEKL LR+LQQ S+I+Q+++I+ LS+++PFF F+ VEKI+VDAVK+NFVAMKV+H+ Sbjct: 444 PSLEKLATLRLLQQVSKIYQTIRIESLSQLVPFFQFSEVEKISVDAVKNNFVAMKVDHMK 503 Query: 235 GAVHFGNMDIESDVLSSHLSVLADSLNKARSLIHPPVYKPSKPSENLASLPGVVEKEHRR 56 G V FGN+ IESD L HL+V A+SL+K R++++P K SK + + +L VEKEH+R Sbjct: 504 GVVIFGNLGIESDGLRDHLAVFAESLSKVRAMLYPVPSKASKLAGVIPNLADTVEKEHKR 563 Query: 55 LLARKSIXKNVKK 17 LLARKSI + K+ Sbjct: 564 LLARKSIIEKRKE 576
>IF3A_TOBAC (Q40554) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (PNLA-35) Length = 958 Score = 220 bits (560), Expect = 3e-57 Identities = 112/193 (58%), Positives = 151/193 (78%) Frame = -1 Query: 595 KGVISCASQEVKDLYNLMEHEFLPLDLASKVQPLLSKISTIGGKLSAASSVPEIRLSQYQ 416 KGV+SC +QEVKDLY+L+E+EFLPLDLA KVQP+LSKIS +GGKLS+ SSVPE++LSQY Sbjct: 384 KGVMSCVTQEVKDLYHLLENEFLPLDLALKVQPVLSKISKLGGKLSSVSSVPEVQLSQYV 443 Query: 415 SALEKLTALRVLQQASRIFQSMKIDMLSRMIPFFDFNVVEKIAVDAVKHNFVAMKVNHLA 236 ALEKL LR+LQQ S+++Q+++ID +S+MIPFFDF V+EKI+VDAV+ NF+A+KV+H+ Sbjct: 444 PALEKLATLRLLQQVSQVYQTIQIDNISKMIPFFDFTVIEKISVDAVRRNFLAIKVDHMK 503 Query: 235 GAVHFGNMDIESDVLSSHLSVLADSLNKARSLIHPPVYKPSKPSENLASLPGVVEKEHRR 56 G N + LA+SL+KAR++I+PP K +K E L++L +VEKEH+R Sbjct: 504 GLSSLVNRVLRRKDSGIICLFLAESLSKARTMIYPPAKKAAKLGEALSNLAEIVEKEHKR 563 Query: 55 LLARKSIXKNVKK 17 LLARKSI + K+ Sbjct: 564 LLARKSIIEKRKE 576
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) Length = 1382 Score = 89.0 bits (219), Expect = 1e-17 Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 19/214 (8%) Frame = -1 Query: 589 VISCASQEVKDLYNLMEHEFLPLDLASKVQPLLSKISTIGGKLSAASSVPEIRLSQYQSA 410 V+ EVKDLYN +E EF PL L +V +L+ + K E L QY Sbjct: 379 VLQYVVPEVKDLYNWLEVEFNPLKLCERVTKVLNWVREQPEK--------EPELQQYVPQ 430 Query: 409 LEKLTALRVLQQASRIFQSMKIDMLSRMIPFFDFNVVEKIAVDAVKHNFVAMKVNHLAGA 230 L+ T LR+LQQ S+I+QS++ L+ ++PF D +E+ VDA +H + ++++H + Sbjct: 431 LQNNTILRLLQQVSQIYQSIEFSRLTSLVPFVDAFQLERAIVDAARHCDLQVRIDHTSRT 490 Query: 229 VHFGN----------------MDIESDVLSSHLSVLADSLNKARSLIHPPVYKPSKPSEN 98 + FG+ + S+ + + L+ ++ L KA +I P K ++ Sbjct: 491 LSFGSDLNYATREDAPIGPHLQSMPSEQIRNQLTAMSSVLAKALEVIKPAHILQEKEEQH 550 Query: 97 LASLPGVVE---KEHRRLLARKSIXKNVKKTXAS 5 ++ ++ KEH+R+LAR+ + K+ S Sbjct: 551 QLAVTAYLKNSRKEHQRILARRQTIEERKERLES 584
>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin) Length = 1344 Score = 87.4 bits (215), Expect = 3e-17 Identities = 60/214 (28%), Positives = 106/214 (49%), Gaps = 19/214 (8%) Frame = -1 Query: 589 VISCASQEVKDLYNLMEHEFLPLDLASKVQPLLSKISTIGGKLSAASSVPEIRLSQYQSA 410 V+ EVKDLYN +E EF PL L +V +L+ + K E L QY Sbjct: 379 VLQYVVPEVKDLYNWLEVEFNPLKLCERVTKVLNWVREQPEK--------EPELQQYVPQ 430 Query: 409 LEKLTALRVLQQASRIFQSMKIDMLSRMIPFFDFNVVEKIAVDAVKHNFVAMKVNHLAGA 230 L+ T LR+LQQ ++I+QS++ L+ ++PF D +E+ VDA +H + ++++H + Sbjct: 431 LQNNTILRLLQQVAQIYQSIEFSRLTSLVPFVDAFQLERAIVDAARHCDLQVRIDHTSRT 490 Query: 229 VHFGN----------------MDIESDVLSSHLSVLADSLNKARSLIHPPVYKPSKPSEN 98 + FG+ + S+ + + L+ ++ L KA +I P K ++ Sbjct: 491 LSFGSDLNYATREDAPVGPHLQSMPSEQIRNQLTAMSSVLAKAIEVIRPAHILQEKEEQH 550 Query: 97 LASLPGVVE---KEHRRLLARKSIXKNVKKTXAS 5 ++ ++ KEH+R+LAR+ + K+ S Sbjct: 551 QLAVNAYLKNSRKEHQRILARRQTIEERKERLES 584
>IF3A_CAEEL (P34339) Probable eukaryotic translation initiation factor 3| subunit 10 (eIF-3 theta) (eIF3a) (Egg-laying defective protein 45) Length = 1076 Score = 73.2 bits (178), Expect = 6e-13 Identities = 41/128 (32%), Positives = 70/128 (54%) Frame = -1 Query: 592 GVISCASQEVKDLYNLMEHEFLPLDLASKVQPLLSKISTIGGKLSAASSVPEIRLSQYQS 413 GV A Q KDLY L+E F PL +A VQ +L ++ P+ QY Sbjct: 388 GVPEAAGQTAKDLYKLLESNFSPLKVAKDVQSVLDTVTR-----------PDHL--QYVE 434 Query: 412 ALEKLTALRVLQQASRIFQSMKIDMLSRMIPFFDFNVVEKIAVDAVKHNFVAMKVNHLAG 233 +L+ + A++ L+Q S I++++ + + ++IPF+ +E++ V+A KH V +++H A Sbjct: 435 SLQAVAAVKALKQVSVIYEAISWERIRKIIPFYSDLALERLVVEASKHRIVKAQLDHRAD 494 Query: 232 AVHFGNMD 209 V FG+ D Sbjct: 495 CVRFGSSD 502
>IF3A_SCHPO (O74760) Probable eukaryotic translation initiation factor 3 110| kDa subunit (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 932 Score = 65.1 bits (157), Expect = 2e-10 Identities = 39/152 (25%), Positives = 80/152 (52%), Gaps = 5/152 (3%) Frame = -1 Query: 601 LPKGVISCASQEVKDLYNLMEHEFLPLDLASKVQPLLSKISTIGGKLSAASSVPEIRLSQ 422 + +GV+S Q ++DLY ++E EF PL + K+QP++ +++ +Q Sbjct: 368 ISRGVLSFCDQAIRDLYQILEVEFHPLSICKKLQPIIKRLAESND------------TAQ 415 Query: 421 YQSALEKLTALRVLQQASRIFQSMKIDMLSRMIPF---FDFN--VVEKIAVDAVKHNFVA 257 Y L+++ R+ QQ S+++ S+ + + + F +DFN +EK ++ K + Sbjct: 416 YIRPLQQVILTRLFQQLSQVYDSISLKYVMDLATFEEPYDFNPGQIEKFIMNGNKKGAFS 475 Query: 256 MKVNHLAGAVHFGNMDIESDVLSSHLSVLADS 161 +++NH+ ++ F + D+ S+ + S SV S Sbjct: 476 IRLNHIENSISFSS-DLFSNPIKSSDSVSLQS 506
>UTP20_MOUSE (Q5XG71) Small subunit processome component 20 homolog| (Down-regulated in metastasis protein) Length = 2788 Score = 33.1 bits (74), Expect = 0.64 Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 5/179 (2%) Frame = -1 Query: 550 NLMEHEFLPLDLASKVQPLLSKISTIGGKLSAASSVPEIRLSQYQSALEKLTALRVLQQA 371 NL++H P A ++PL S I KLS ++S ++S L+ +T + L Sbjct: 1379 NLLQHCLHP---AHFLRPLAKLFSVIKNKLSRQLLCTVFQMSDFESRLKYITDIVKL--- 1432 Query: 370 SRIFQSMKIDMLSRMIPFFDFNVVEKIAVDAVKHNFVAMK---VNHLAGAVH--FGNMDI 206 F +D ++ + F F + N AM+ ++L +H F NM+I Sbjct: 1433 -NAFDKRHLDDINFDVRFSAFQTITS--------NIKAMQTVDADYLIAVMHNCFYNMEI 1483 Query: 205 ESDVLSSHLSVLADSLNKARSLIHPPVYKPSKPSENLASLPGVVEKEHRRLLARKSIXK 29 LS + S+ S+ K LA+L V EKE++ ++ R + K Sbjct: 1484 GDMSLSDNASICLTSIIK-----------------RLAAL-NVTEKEYKEIIHRTLLEK 1524
>RL1_RHOS4 (Q3J5T3) 50S ribosomal protein L1| Length = 232 Score = 32.3 bits (72), Expect = 1.1 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Frame = -1 Query: 295 KIAVDAVKHNFVAMKVNHLAGAVH--FGNMDIESDVLSSHLSVLADSLNKAR 146 K AV+A K V KV AG +H G M E+D L+ ++ D++N+A+ Sbjct: 150 KSAVEAAKGGEVQFKVEK-AGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAK 200
>ATCX_SCHPO (Q09891) Putative phospholipid-transporting ATPase 1 (EC 3.6.3.1)| Length = 1402 Score = 30.8 bits (68), Expect = 3.2 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Frame = +2 Query: 170 KDTKVTTKHIRFYVHVAKMNSSCQMVNFHSNKIVLDS----INSDLLHDIEVK 316 KDT+ T + ++ +M QM N H NK ++D I+S +HD+ K Sbjct: 608 KDTEELTLQKQSFIERDRMQMISQMRNMHDNKYLVDDNLTFISSQFVHDLAGK 660
>TAB3_HUMAN (Q8N5C8) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 3 (TAK1-binding protein 3) (NF-kappa-B-activating protein 1) Length = 712 Score = 30.8 bits (68), Expect = 3.2 Identities = 18/67 (26%), Positives = 32/67 (47%) Frame = -1 Query: 205 ESDVLSSHLSVLADSLNKARSLIHPPVYKPSKPSENLASLPGVVEKEHRRLLARKSIXKN 26 E D+L S + ++N I P P KPS+ +S P +E++ RR+ + + Sbjct: 594 EVDLLQSRGNFDPKAMNNFYDNIEPGPVVPPKPSKKDSSDPCTIERKARRISVTSKVQAD 653 Query: 25 VKKTXAS 5 + T A+ Sbjct: 654 IHDTQAA 660
>NCD_DROME (P20480) Protein claret segregational| Length = 700 Score = 30.8 bits (68), Expect = 3.2 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 137 NKTPCFVQGISKDTKVTTKHIRFYVHVAKMN 229 NK +V I+++T + H+R +H AKMN Sbjct: 508 NKNDIYVSNITEETVLDPNHLRHLMHTAKMN 538
>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch| Length = 5412 Score = 30.4 bits (67), Expect = 4.1 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 15/153 (9%) Frame = -1 Query: 499 PLLSKISTIGGKLSAASSVPEIRLSQYQSALEKLTALRVLQQASRIFQSMKID------M 338 PL SK I SA +V + S +S E +TA R + + + +S K D + Sbjct: 1697 PLTSK--DISRPESAVENVMDAVGSAERSQPESVTASRDVSRPESVAESEKDDTDKPESV 1754 Query: 337 LSRMIPFFDFNVVEKIAVDAVKHNFVAMKVNHLAGAVHFGNMDIESDVLSSH----LSVL 170 + +IP D +EK A D K FV++++ G D S+V+S SV Sbjct: 1755 VESVIPASDVVEIEKGAADKEKGVFVSLEI---------GKPDSPSEVISRPGPVVESVK 1805 Query: 169 ADSLNKARSLIHPPVY-----KPSKPSENLASL 86 +S ++ + I P + +PS+P + L Sbjct: 1806 PESRRESSTEIVLPCHAEDSKEPSRPESKVECL 1838
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 30.0 bits (66), Expect = 5.4 Identities = 21/58 (36%), Positives = 29/58 (50%) Frame = +3 Query: 297 STTLKSKNGIILDSISIFIDWKIRDACCSTLSAVSFSSADWYCDKRISGTEDAAESFP 470 S+ + S + +I S SI I I CS + A S +SA C+ SGT A+ S P Sbjct: 870 SSGISSASNLINQSTSINIS-NIGTNACSAMPAPSLASAVVSCNVNASGTVPASTSMP 926
>IF2G_METMA (Q8PZA0) Translation initiation factor 2 gamma subunit| (eIF-2-gamma) (aIF2-gamma) Length = 431 Score = 29.6 bits (65), Expect = 7.0 Identities = 23/111 (20%), Positives = 51/111 (45%) Frame = -1 Query: 406 EKLTALRVLQQASRIFQSMKIDMLSRMIPFFDFNVVEKIAVDAVKHNFVAMKVNHLAGAV 227 E L AL ++ + + KID++SR +++ +++ V N + ++ A Sbjct: 148 EHLMALDIIGIKNIVIVQNKIDLVSREKIIENYHQIKEFVKGTVAENAPVIPIS----AQ 203 Query: 226 HFGNMDIESDVLSSHLSVLADSLNKARSLIHPPVYKPSKPSENLASLPGVV 74 N+DI D L + + + ++K S++ + +KP ++ + G V Sbjct: 204 QNINIDILIDALETQIPTPSHKVDKPASMLIARSFDINKPGASIEEIRGGV 254
>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1687 Score = 29.6 bits (65), Expect = 7.0 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Frame = -1 Query: 529 LPLDLASKVQPLLSKISTIGGKLSAASSVPEIRLSQYQSALEKLTALRVLQQASRIFQSM 350 LP +L S + ++S +G + + +PE+ LEKLTA+ L A +++ Sbjct: 708 LPAELES-----MHQLSYLGLSFNEFTDIPEV--------LEKLTAVDKLCMAGNCVETL 754 Query: 349 KIDMLSRM--IPFFD--FNVVEKIAVDAV 275 ++ L RM I D N++ K+ D V Sbjct: 755 RLQALRRMPHIKHVDLRLNILRKLMADEV 783
>SRP54_RAT (Q6AYB5) Signal recognition particle 54 kDa protein (SRP54)| Length = 504 Score = 29.3 bits (64), Expect = 9.2 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = -1 Query: 508 KVQPLLSKISTIGGKLSAASSVPEIRLSQYQSALEKL-----TALRVLQQASRIFQSMKI 344 K QP +SK+ +G V E++L ++ +EKL T + +Q I + Sbjct: 286 KTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPF 345 Query: 343 DMLSRMIPFFDFNVVEK 293 + MIP F + + K Sbjct: 346 SQILGMIPGFGTDFMSK 362
>SRP54_PONPY (Q5R4R6) Signal recognition particle 54 kDa protein (SRP54)| Length = 504 Score = 29.3 bits (64), Expect = 9.2 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = -1 Query: 508 KVQPLLSKISTIGGKLSAASSVPEIRLSQYQSALEKL-----TALRVLQQASRIFQSMKI 344 K QP +SK+ +G V E++L ++ +EKL T + +Q I + Sbjct: 286 KTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPF 345 Query: 343 DMLSRMIPFFDFNVVEK 293 + MIP F + + K Sbjct: 346 SQILGMIPGFGTDFMSK 362
>SRP54_MOUSE (P14576) Signal recognition particle 54 kDa protein (SRP54)| Length = 504 Score = 29.3 bits (64), Expect = 9.2 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = -1 Query: 508 KVQPLLSKISTIGGKLSAASSVPEIRLSQYQSALEKL-----TALRVLQQASRIFQSMKI 344 K QP +SK+ +G V E++L ++ +EKL T + +Q I + Sbjct: 286 KTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPF 345 Query: 343 DMLSRMIPFFDFNVVEK 293 + MIP F + + K Sbjct: 346 SQILGMIPGFGTDFMSK 362
>SRP54_MACFA (Q4R965) Signal recognition particle 54 kDa protein (SRP54)| Length = 504 Score = 29.3 bits (64), Expect = 9.2 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = -1 Query: 508 KVQPLLSKISTIGGKLSAASSVPEIRLSQYQSALEKL-----TALRVLQQASRIFQSMKI 344 K QP +SK+ +G V E++L ++ +EKL T + +Q I + Sbjct: 286 KTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPF 345 Query: 343 DMLSRMIPFFDFNVVEK 293 + MIP F + + K Sbjct: 346 SQILGMIPGFGTDFMSK 362
>SRP54_HUMAN (P61011) Signal recognition particle 54 kDa protein (SRP54)| Length = 504 Score = 29.3 bits (64), Expect = 9.2 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = -1 Query: 508 KVQPLLSKISTIGGKLSAASSVPEIRLSQYQSALEKL-----TALRVLQQASRIFQSMKI 344 K QP +SK+ +G V E++L ++ +EKL T + +Q I + Sbjct: 286 KTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPF 345 Query: 343 DMLSRMIPFFDFNVVEK 293 + MIP F + + K Sbjct: 346 SQILGMIPGFGTDFMSK 362
>SRP54_CANFA (P61010) Signal recognition particle 54 kDa protein (SRP54)| Length = 504 Score = 29.3 bits (64), Expect = 9.2 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = -1 Query: 508 KVQPLLSKISTIGGKLSAASSVPEIRLSQYQSALEKL-----TALRVLQQASRIFQSMKI 344 K QP +SK+ +G V E++L ++ +EKL T + +Q I + Sbjct: 286 KTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPF 345 Query: 343 DMLSRMIPFFDFNVVEK 293 + MIP F + + K Sbjct: 346 SQILGMIPGFGTDFMSK 362
>AMYG_ASPSH (P22832) Glucoamylase precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) Length = 639 Score = 29.3 bits (64), Expect = 9.2 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Frame = +3 Query: 228 TAPAKWLTFIATKLCLTASTA-----IFSTTLKSKNGIILDSISIFIDWKIRDACCSTLS 392 T +K T ++ C T + + +TT +N ++ SIS DW+ D + Sbjct: 518 TTASKTSTTTSSTSCTTPTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSAD 577 Query: 393 AVSFSSADWYCDKRISGTEDAAESF 467 + S+ WY ++ T A ESF Sbjct: 578 KYTSSNPPWY----VTVTLPAGESF 598 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,481,596 Number of Sequences: 219361 Number of extensions: 1633997 Number of successful extensions: 5113 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4961 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5107 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
