Clone Information

BLAST Search Result

Clone Name	rbasd19b15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chro...	108	1e-23
2	CHMP5_XENTR (Q5FW29) Charged multivesicular body protein 5 (Chro...	107	3e-23
3	CHMP5_RAT (Q4QQV8) Charged multivesicular body protein 5 (Chroma...	106	4e-23
4	CHMP5_MOUSE (Q9D7S9) Charged multivesicular body protein 5 (Chro...	106	4e-23
5	CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chro...	105	1e-22
6	CHMP5_PONPY (Q5RBR3) Charged multivesicular body protein 5 (Chro...	104	2e-22
7	CHMP5_HUMAN (Q9NZZ3) Charged multivesicular body protein 5 (Chro...	104	2e-22
8	VPS60_YEAST (Q03390) Vacuolar protein sorting-associated protein...	74	4e-13
9	SNF7_KLULA (Q6CJL0) Vacuolar sorting protein SNF7 (Vacuolar prot...	65	1e-10
10	SNF7_CANGA (Q6FW96) Vacuolar sorting protein SNF7 (Vacuolar prot...	59	1e-08
11	SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar prot...	55	2e-07
12	SNF7_CRYNE (Q5KL29) Vacuolar sorting protein SNF7 (Vacuolar prot...	54	4e-07
13	CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a (Chr...	53	6e-07
14	VPS20_YEAST (Q04272) Vacuolar protein sorting protein 20 (Amino ...	51	3e-06
15	SNF7_YARLI (Q6CBS3) Vacuolar sorting protein SNF7 (Vacuolar prot...	50	6e-06
16	SNF7_ASHGO (Q753W3) Vacuolar sorting protein SNF7 (Vacuolar prot...	50	6e-06
17	CHM4C_HUMAN (Q96CF2) Charged multivesicular body protein 4c (Chr...	48	2e-05
18	SNF7_SCHPO (Q9P7F7) Vacuolar sorting protein snf7 (Vacuolar prot...	48	2e-05
19	CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b (Chr...	47	4e-05
20	CHMP7_HUMAN (Q8WUX9) Protein CHMP7	47	4e-05
21	CHMP7_MOUSE (Q8R1T1) Protein CHMP7	47	5e-05
22	CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b (Chr...	47	5e-05
23	CHM4C_BRARE (Q6IQ73) Charged multivesicular body protein 4c (Chr...	46	7e-05
24	SNF7_DEBHA (Q6BSH2) Vacuolar sorting protein SNF7 (Vacuolar prot...	46	7e-05
25	CHMP7_PONPY (Q5R812) Protein CHMP7	46	9e-05
26	CHMP7_CHICK (Q5ZJB7) Protein CHMP7	44	5e-04
27	CHM4B_MOUSE (Q9D8B3) Charged multivesicular body protein 4b (Chr...	42	0.001
28	CHM4B_HUMAN (Q9H444) Charged multivesicular body protein 4b (Chr...	42	0.001
29	SNF7_YEAST (P39929) Vacuolar sorting protein SNF7 (DOA4-independ...	42	0.001
30	CHM4B_CHICK (Q5ZHP5) Charged multivesicular body protein 4b (Chr...	42	0.001
31	CG301_HUMAN (P59074) Protein CGI-301	39	0.011
32	NU159_YEAST (P40477) Nucleoporin NUP159 (Nuclear pore protein NU...	37	0.057
33	DNAK_WOLTR (Q5GSE1) Chaperone protein dnaK (Heat shock protein 7...	33	0.48
34	SYS_VIBPA (Q87QP1) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--...	32	1.1
35	MDN1_YEAST (Q12019) Midasin (MIDAS-containing protein)	32	1.1
36	SQT1_YEAST (P35184) Ribosome assembly protein SQT1	32	1.8
37	APEA_DICDI (P51173) DNA-(apurinic or apyrimidinic site) lyase (E...	31	2.4
38	RPOB_THETN (Q8R7U6) DNA-directed RNA polymerase beta chain (EC 2...	31	2.4
39	YJE9_YEAST (P47048) Hypothetical 52.8 kDa protein in MTR4-GYP6 i...	31	2.4
40	DNAK_WOLPM (Q73GL7) Chaperone protein dnaK (Heat shock protein 7...	31	2.4
41	ECX1_METMA (Q8PTT8) Probable exosome complex exonuclease 1 (EC 3...	31	3.1
42	MLP2_YEAST (P40457) Protein MLP2 (Myosin-like protein 2)	30	4.1
43	TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-d...	30	4.1
44	TRI37_HUMAN (O94972) Tripartite motif protein 37 (Mulibrey nanis...	30	4.1
45	RPOE_BACSU (P12464) DNA-directed RNA polymerase delta subunit (R...	30	4.1
46	ALG10_GIBZE (Q4HZE0) Alpha-1,2 glucosyltransferase ALG10 (EC 2.4...	30	4.1
47	ZN198_MOUSE (Q9CU65) Zinc finger protein 198 (Fragment)	30	4.1
48	SMC_METJA (Q59037) Chromosome partition protein smc homolog	30	5.3
49	RPOB_DEHSC (Q3ZX01) DNA-directed RNA polymerase beta chain (EC 2...	30	6.9
50	GVPD2_HALSA (Q9HHT2) Protein gvpD 2	30	6.9
51	DBP9_SCHPO (O60080) ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)	30	6.9
52	DNAK_EHRRW (Q5HAY1) Chaperone protein dnaK (Heat shock protein 7...	29	9.1
53	DNAK_EHRRG (Q5FFM4) Chaperone protein dnaK (Heat shock protein 7...	29	9.1
54	TRI37_MOUSE (Q6PCX9) Tripartite motif protein 37	29	9.1
55	TRPA_BRUSU (Q8FXY6) Tryptophan synthase alpha chain (EC 4.2.1.20)	29	9.1
56	TRPA_BRUAB (Q57AF2) Tryptophan synthase alpha chain (EC 4.2.1.20)	29	9.1
57	TOM1_YEAST (Q03280) E3 ubiquitin protein ligase TOM1 (EC 6.3.2.-...	29	9.1

>CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 220

 Score =  108 bits (270), Expect = 1e-23
 Identities = 62/162 (38%), Positives = 91/162 (56%), Gaps = 6/162 (3%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           Q++MYEGQRD L  Q++N+ Q  +    +KD +  + AMK   KE+K   K V+I+ I+ 
Sbjct: 71  QKRMYEGQRDQLMQQSFNMEQANYTIQTLKDTKTTVEAMKIGAKEMKKAYKNVKIDQIED 130

Query: 417 MQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDK 238
           +QD++ D+M+ +NE+QE L RSY  P +IDE++L  ELDAL  ++          L  D 
Sbjct: 131 LQDQLEDMMEDANEVQEALSRSYGTP-EIDEDDLEAELDALGDEL----------LLDDD 179

Query: 237 ETDLDSELNLPAAPSGHAAVPANRQQE------DEMGLPTVP 130
            + LD   + PA P G    P +R         DE GLP +P
Sbjct: 180 NSYLDEASSAPAIPEG---APGDRTTNRDGVLVDEFGLPQIP 218

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>CHMP5_XENTR (Q5FW29) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  107 bits (267), Expect = 3e-23
 Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           Q++MYE QRD L  Q++N+ Q  +A   +KD +  + AMK   KE+K   K V+I+ I+ 
Sbjct: 71  QKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIED 130

Query: 417 MQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDK 238
           +QD++ D+M+ +NEIQE L RSY  P +IDE++L  ELDAL  ++          L  D 
Sbjct: 131 LQDQLEDMMENANEIQEALSRSYGTP-EIDEDDLEAELDALGDEL----------LLDDD 179

Query: 237 ETDLDSELNLPAAPSGHAAVPANRQQE-----DEMGLPTVP 130
            + LD   + PA P G   VP + + +     DE GLP +P
Sbjct: 180 TSYLDEAASAPAIPEG---VPNDSKNKDGVLVDEFGLPQIP 217

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>CHMP5_RAT (Q4QQV8) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  106 bits (265), Expect = 4e-23
 Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           Q++MYE QRD L  Q++N+ Q  +    +KD +  + AMK   KE+K   K V+I+ I+ 
Sbjct: 71  QKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKEVKIDQIED 130

Query: 417 MQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDK 238
           +QD++ D+M+ +NEIQE LGRSY  P ++DE++L  ELDAL  ++          L  + 
Sbjct: 131 LQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDALGDEL----------LADED 179

Query: 237 ETDLDSELNLPAAPSGHAAVPANRQQE-----DEMGLPTVP 130
            + LD   + PA P G   VP + + +     DE GLP +P
Sbjct: 180 SSYLDEAASAPAIPEG---VPTDTKNKDGVLVDEFGLPQIP 217

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>CHMP5_MOUSE (Q9D7S9) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5) (SNF7 domain-containing protein 2)
          Length = 219

 Score =  106 bits (265), Expect = 4e-23
 Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           Q++MYE QRD L  Q++N+ Q  +    +KD +  + AMK   KE+K   K V+I+ I+ 
Sbjct: 71  QKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKEVKIDQIED 130

Query: 417 MQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDK 238
           +QD++ D+M+ +NEIQE LGRSY  P ++DE++L  ELDAL  ++          L  + 
Sbjct: 131 LQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDALGDEL----------LADED 179

Query: 237 ETDLDSELNLPAAPSGHAAVPANRQQE-----DEMGLPTVP 130
            + LD   + PA P G   VP + + +     DE GLP +P
Sbjct: 180 SSYLDEAASAPAIPEG---VPTDTKNKDGVLVDEFGLPQIP 217

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>CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  105 bits (261), Expect = 1e-22
 Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 5/161 (3%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           Q++MYE QRD L  Q++N+ Q  +    +KD +  + AMK   KE+K   K V+I+ I+ 
Sbjct: 71  QKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIED 130

Query: 417 MQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDK 238
           +QD++ D+M+ +NEIQE L RSY  P +IDE++L  ELDAL  ++          L  D 
Sbjct: 131 LQDQLEDMMENANEIQEALSRSYGTP-EIDEDDLEAELDALGDEL----------LLDDD 179

Query: 237 ETDLDSELNLPAAPSGHAAVPANRQQE-----DEMGLPTVP 130
            + LD   + PA P G   VP + + +     DE GLP +P
Sbjct: 180 TSYLDEAASAPAIPEG---VPNDSKNKDGVLVDEFGLPQIP 217

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>CHMP5_PONPY (Q5RBR3) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  104 bits (259), Expect = 2e-22
 Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 5/161 (3%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           Q++MYE QRD L  Q++N+ Q  +    +KD +  + AMK   KE+K   K V+I+ I+ 
Sbjct: 71  QKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIED 130

Query: 417 MQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDK 238
           +QD++ D+M+ +NEIQE L RSY  P ++DE++L  ELDAL  ++          L  + 
Sbjct: 131 LQDQLEDMMEDANEIQEALSRSYGTP-ELDEDDLEAELDALGDEL----------LADED 179

Query: 237 ETDLDSELNLPAAPSGHAAVPANRQQE-----DEMGLPTVP 130
            + LD   + PA P G   VP + + +     DE GLP +P
Sbjct: 180 SSYLDEAASAPAIPEG---VPTDTKNKDGVLVDEFGLPQIP 217

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>CHMP5_HUMAN (Q9NZZ3) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5) (Vacuolar protein sorting 60) (Vps60)
           (hVps60) (SNF7 domain-containing protein 2)
          Length = 219

 Score =  104 bits (259), Expect = 2e-22
 Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 5/161 (3%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           Q++MYE QRD L  Q++N+ Q  +    +KD +  + AMK   KE+K   K V+I+ I+ 
Sbjct: 71  QKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIED 130

Query: 417 MQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDK 238
           +QD++ D+M+ +NEIQE L RSY  P ++DE++L  ELDAL  ++          L  + 
Sbjct: 131 LQDQLEDMMEDANEIQEALSRSYGTP-ELDEDDLEAELDALGDEL----------LADED 179

Query: 237 ETDLDSELNLPAAPSGHAAVPANRQQE-----DEMGLPTVP 130
            + LD   + PA P G   VP + + +     DE GLP +P
Sbjct: 180 SSYLDEAASAPAIPEG---VPTDTKNKDGVLVDEFGLPQIP 217

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>VPS60_YEAST (Q03390) Vacuolar protein sorting-associated protein VPS60|
          Length = 262

 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 18/145 (12%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           +RK  E  +D L +Q++++ Q    +  +++    + A+K  N  +K     + I+ +  
Sbjct: 109 KRKQLENMKDSLDSQSWSMTQAQLTNDNLQNTMITINALKQTNNAMKAQYGKINIDKLQD 168

Query: 417 MQDEMMDLMDVSNEIQETLGRSYNVP--DDIDEEELMGELDALEADMDFE--------SN 268
           MQDEM+DL++  +E+QE L  + N    DDI + EL  ELDAL A  DF          N
Sbjct: 169 MQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDAL-AQEDFTLPTSENSLGN 227

Query: 267 SVPSYLQP--------DKETDLDSE 217
            +PSYL          D+E +LD+E
Sbjct: 228 DMPSYLLGANAPPAFIDEEPNLDTE 252

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>SNF7_KLULA (Q6CJL0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 232

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           ++K+YE Q D L +Q  +L Q  ++        + + AMK     +K + K + ++ +D 
Sbjct: 66  KKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDD 125

Query: 417 MQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDK 238
             DE+ + ++++ EI E + +   + D++DE+EL  EL+ LE++   + +  P   Q  +
Sbjct: 126 TMDEIREQVELNQEISEAISKPLILQDELDEDELDQELELLESENLQKEHIAPVPQQQIQ 185

Query: 237 ETDLDSELNLPAAPSGHAAVP-ANRQQEDE 151
           +  +D    LP+ P    + P  N  Q DE
Sbjct: 186 QPSID----LPSVPDVKLSTPELNSAQADE 211

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>SNF7_CANGA (Q6FW96) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 228

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 1/150 (0%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           ++K+YEGQ   L +Q  +L Q  F+        + M AMK   K +K +   + I+ +D 
Sbjct: 67  KKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQGAKAMKSIHSGLDIDRVDE 126

Query: 417 MQDEMMDLMDVSNEIQETLGRS-YNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPD 241
             DE+ + +++  EI + + R  Y   ++IDE+EL  ELD L  + + +  +    L   
Sbjct: 127 TMDEIREQVELGEEISDAISRPLYTGANEIDEDELDEELDMLAQETEPQVATKEQALPES 186

Query: 240 KETDLDSELNLPAAPSGHAAVPANRQQEDE 151
           K+    S  N+P      +      ++EDE
Sbjct: 187 KQA--LSMPNIPNTKIDESKTKIEEEEEDE 214

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>SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 40/152 (26%), Positives = 67/152 (44%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           ++K YE     + NQ   L     +  G     + M AMK   K +K +     ++ ++ 
Sbjct: 67  RKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQGAKAMKQIHGEYDVDKVED 126

Query: 417 MQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDK 238
             DE+ + +++++EI E + R     + +DE+EL  EL  LEA+   +        Q  K
Sbjct: 127 TMDEIREQVELADEISEAISRPVG-NEFVDEDELDEELKELEAEAKEQEQEHRVPAQKAK 185

Query: 237 ETDLDSELNLPAAPSGHAAVPANRQQEDEMGL 142
              +  E  LP  PS +   P   + EDE  L
Sbjct: 186 PQPVSREEELPQFPSVNKKAPVVEEDEDEEAL 217

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>SNF7_CRYNE (Q5KL29) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 220

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 8/156 (5%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           Q+K +E + D +      L     A        + M AMK     LKG+   +  E +D+
Sbjct: 67  QKKAHENELDRIAGTRLTLETQVNAIESANLNAETMVAMKKGADALKGIHSNLTAEGVDA 126

Query: 417 MQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEA----DMDFESNSVPSYL 250
             D++ + MD++N+I + +     +   +DE++L  EL+ALE     D    ++ VPS+ 
Sbjct: 127 TMDKIREQMDLTNDISDAISNPVGMGIVLDEDDLKEELEALEQEQLDDRLAGADRVPSH- 185

Query: 249 QPDKETDLDSELNLPAAP----SGHAAVPANRQQED 154
                        LPA+P    +G AAV  +   E+
Sbjct: 186 -------------LPASPVGQTTGRAAVEEDEDDEE 208

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>CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a|
           (Chromatin-modifying protein 4a) (CHMP4a) (Vacuolar
           protein sorting 7-1) (SNF7-1) (hSnf-1) (SNF7 homolog
           associated with Alix-2)
          Length = 222

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           ++K +E Q   L      L  + F    I++A      ++      + M K  +  DID 
Sbjct: 68  RKKRFEQQ---LAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAYQDMDIDK 124

Query: 417 MQDEMMDL---MDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQ 247
           + + M D+    +V+ +I + + R     DD+DE+EL+ EL+ LE +       +   L 
Sbjct: 125 VDELMTDITEQQEVAQQISDAISRPMGFGDDVDEDELLEELEELEQE------ELAQELL 178

Query: 246 PDKETDLDSELNLPAAPSGH-AAVPANRQQEDEMGL 142
              + + +  + LP+ PS H  A PA +  EDE  L
Sbjct: 179 NVGDKEEEPSVKLPSVPSTHLPAGPAPKVDEDEEAL 214

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>VPS20_YEAST (Q04272) Vacuolar protein sorting protein 20 (Amino acid|
           sensor-independent protein 10) (Charged multivesicular
           body protein 6)
          Length = 220

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
 Frame = -3

Query: 501 QQXMTAMKAXNKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSY----NVPDD 334
           +Q +  +K  N+ LK + K     ++D + D++ D +   NEI ETL RS     N  DD
Sbjct: 99  KQFINGLKNGNEILKKLNK--EFSNVDELMDDVQDQIAYQNEINETLSRSLVGTSNYEDD 156

Query: 333 IDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQ 160
           +D+     ELDALE++++      P  +   K  ++ S   LP+ P G       R++
Sbjct: 157 LDK-----ELDALESELN------PEKMNNAKVANMPSTEGLPSLPQGEQTEQKEREE 203

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>SNF7_YARLI (Q6CBS3) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 215

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
 Frame = -3

Query: 498 QXMTAMKAXNKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEE 319
           + M AM+   K +K +   + I+ +D + DE  D + +S E+ E + R Y   +  D+EE
Sbjct: 95  ETMKAMQEGAKAMKQIHGNMNIDKVDKIMDETRDQVALSEEVSEAISRPY--ANAYDDEE 152

Query: 318 LMGELDALEAD-MDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDE 151
           L  EL+ALE + ++ E  +     Q   +    +  +LPAAP+    VPA  + ++E
Sbjct: 153 LEDELEALEQETLEGELTNAGHVKQDGVQV---TPHDLPAAPN---QVPAEEEDDEE 203

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>SNF7_ASHGO (Q753W3) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 237

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 9/158 (5%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           ++K++E Q   +  Q  +L Q  ++        + M AMK     +K + + + +E +D 
Sbjct: 68  RKKVFESQLLKIDKQVDSLEQQLYSIENANLNLETMKAMKQGASAMKHIHEGLDVERVDE 127

Query: 417 MQDEMMDLMDVSNEIQETLGRS-YNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPD 241
             DE+ + +++  EI E + R  Y   ++IDE+EL  ELD L  +        P    P 
Sbjct: 128 TMDEIREQVELGEEISEAISRPLYTGVNEIDEDELDEELDMLAQEEVARKVMEPGAAVPA 187

Query: 240 KETDLDSELNLPAAPS--------GHAAVPANRQQEDE 151
                 ++++LP+ PS        G        Q+EDE
Sbjct: 188 AAP--ATKVSLPSVPSSDMPQQDRGQPVTLGMDQEEDE 223

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>CHM4C_HUMAN (Q96CF2) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c) (Vacuolar
           protein sorting 7-3) (SNF7-3) (hSnf7-3) (SNF7 homolog
           associated with Alix 3)
          Length = 233

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
 Frame = -3

Query: 468 KELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEA 289
           K +K + + + +  ID +  E+ +  D++ EI E   +     DD DE+ELM EL+ LE 
Sbjct: 114 KAMKSVHENMDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQ 173

Query: 288 D-----------MDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDE 151
           +            +  S+S+P+  QP+++  + S      A    AA     ++ED+
Sbjct: 174 EELNKKMTNIRLPNVPSSSLPA--QPNRKPGMSS-----TARRSRAASSQRAEEEDD 223

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>SNF7_SCHPO (Q9P7F7) Vacuolar sorting protein snf7 (Vacuolar protein|
           sorting-associated protein vps32)
          Length = 222

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 27/118 (22%), Positives = 57/118 (48%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           ++KM+E +   +     N+ Q  F+        + + AM+   + +K + + +  + +D 
Sbjct: 66  RKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQ 125

Query: 417 MQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQP 244
           + D++ D   +S EI   +     +  +IDE+EL  ELD L+  M+ +S  + +   P
Sbjct: 126 IMDKIRDQQTISEEISTMISTPVGLNAEIDEDELANELDELQ-QMELDSKMLGAEKPP 182

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>CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 222

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXN---KELKGMMKTVRIED 427
           ++K YE Q   +      L  + F    +++A      +K      K +K     + IE 
Sbjct: 69  RKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEK 125

Query: 426 IDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQ 247
           +D +  ++ D  +++ EI + + +     +D DE+ELM EL+ LE + + + N +   +Q
Sbjct: 126 VDELMQDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQE-ELDKNLLE--VQ 182

Query: 246 PDKETDLDSELNLPAAPSGHAAVPANRQQEDE 151
             +   L    N+PAA     A P  ++QE++
Sbjct: 183 GPETVPLP---NVPAA--SLPAKPVKKKQEED 209

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>CHMP7_HUMAN (Q8WUX9) Protein CHMP7|
          Length = 453

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
 Frame = -3

Query: 501 QQXMTAMKAXNKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEE 322
           Q    A +A    LK  MK V +E  +S+ D++ +L D  +E+ +TL        D D E
Sbjct: 319 QMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSE 378

Query: 321 ELMGELDALEADMDFE-------------SNSVPSYLQPDKETDLDSELNLPAAPSGHAA 181
           EL  ELD L  D   E             +NSVP+    D E  L++EL   +   G   
Sbjct: 379 ELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE--LEAELEKLSLSEG-GL 435

Query: 180 VPANRQQEDEM 148
           VP+++  + ++
Sbjct: 436 VPSSKSPKRQL 446

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>CHMP7_MOUSE (Q8R1T1) Protein CHMP7|
          Length = 451

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 32/92 (34%), Positives = 45/92 (48%)
 Frame = -3

Query: 501 QQXMTAMKAXNKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEE 322
           Q    A +A    LK  MK V +E  +S+ D++ +L D  +E+ +TL        D D E
Sbjct: 319 QMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSE 378

Query: 321 ELMGELDALEADMDFESNSVPSYLQPDKETDL 226
           EL  ELD L  D   E  S+   L+  +ET L
Sbjct: 379 ELEKELDILLQDTTTEPLSL---LETPQETTL 407

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>CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 222

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXN---KELKGMMKTVRIED 427
           ++K YE Q   +      L  + F    +++A      +K      K +K     + IE 
Sbjct: 69  RKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEK 125

Query: 426 IDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQ 247
           +D +  ++ D  +++ EI + + +     +D DE+ELM EL+ LE + + + N +   +Q
Sbjct: 126 VDELMQDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQE-ELDKNLLE--VQ 182

Query: 246 PDKETDLDSELNLPAAPSGHAAVPANRQQEDE 151
             +   L    N+PAA     A P  ++QE++
Sbjct: 183 GPETVPLP---NVPAAVL--PAKPVKKKQEED 209

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>CHM4C_BRARE (Q6IQ73) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 224

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 11/160 (6%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           ++K YE Q   +      L  + F    +++A      +K      K M       DID 
Sbjct: 69  RKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDK 125

Query: 417 MQDEMMDL---MDVSNEIQETLGRSYNVPDDIDEEELMGELDAL---EADMDFESNSVPS 256
           + D M D+    +++ EI + + R     ++ DE+ELM EL+ L   E D D    S P 
Sbjct: 126 VDDLMQDITEQQELAQEISDAISRPVGFGEEFDEDELMAELEELEQEELDKDLLQISGP- 184

Query: 255 YLQPDKETDLDSELNLPAAPSG-----HAAVPANRQQEDE 151
                       ++ LP  PS       A     RQ+EDE
Sbjct: 185 -----------EDVPLPNVPSNPLPKKTAVAQKKRQEEDE 213

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>SNF7_DEBHA (Q6BSH2) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 33/149 (22%), Positives = 68/149 (45%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDS 418
           ++K YE     + NQ  +L     +  G     + M AMK   + +K +     ++ +++
Sbjct: 66  RKKGYEANLMKIENQIDSLETQLTSIEGANLNLETMKAMKQGAQAMKQIHGEYDVDKVEN 125

Query: 417 MQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDK 238
             D++ + +++++EI E + R     + +DE+EL  EL  L+ +        P+   P  
Sbjct: 126 TMDDIREQVELADEISEAISRPVGT-EFVDEDELDEELAMLQEEEKEHKQQTPAQKAPVA 184

Query: 237 ETDLDSELNLPAAPSGHAAVPANRQQEDE 151
           +     E  +P  P+ +   PA   ++DE
Sbjct: 185 KVSAPEE-EMPDFPTVNKNKPAASTEDDE 212

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>CHMP7_PONPY (Q5R812) Protein CHMP7|
          Length = 453

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 28/81 (34%), Positives = 39/81 (48%)
 Frame = -3

Query: 501 QQXMTAMKAXNKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEE 322
           Q    A +A    LK  MK V +E  +S+ D++ +L D  +E+ +TL        D D E
Sbjct: 319 QMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSE 378

Query: 321 ELMGELDALEADMDFESNSVP 259
           EL  ELD L  D   E   +P
Sbjct: 379 ELEKELDILLQDTTKEPLDLP 399

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>CHMP7_CHICK (Q5ZJB7) Protein CHMP7|
          Length = 448

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 34/118 (28%), Positives = 55/118 (46%)
 Frame = -3

Query: 501 QQXMTAMKAXNKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEE 322
           Q    A +A    LK  MK V +E  +++ D++ +L D  +E+ +TL  +     ++D E
Sbjct: 317 QMVFNAYQAGVGALKLSMKDVTVEKAENLVDQIQELCDTQDEVAQTLAGAGVNGLEMDSE 376

Query: 321 ELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDEM 148
           EL  ELD+L  D    S   P +L P           +P   SG A   ++ + E E+
Sbjct: 377 ELEKELDSLLQD----SAKEPVHLHP-----------VPQKDSGFAGAISDAELEAEL 419

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>CHM4B_MOUSE (Q9D8B3) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 224

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 4/153 (2%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXN---KELKGMMKTVRIED 427
           ++K YE Q   +      L  + F    +++A      +K      K +K     + I+ 
Sbjct: 71  RKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDK 127

Query: 426 IDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQ 247
           +D +  ++ D  +++ EI   + +     ++ DE+ELM EL+ LE + + + N +     
Sbjct: 128 VDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQE-ELDKNLL----- 181

Query: 246 PDKETDLDSELNLPAAPS-GHAAVPANRQQEDE 151
              E      + LP  PS    + PA +++E++
Sbjct: 182 ---EISGPETVPLPNVPSVALPSKPAKKKEEED 211

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>CHM4B_HUMAN (Q9H444) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b) (Vacuolar
           protein sorting 7-2) (SNF7-2) (hSnf7-2) (SNF7 homolog
           associated with Alix 1) (hVps32)
          Length = 224

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 4/153 (2%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXN---KELKGMMKTVRIED 427
           ++K YE Q   +      L  + F    +++A      +K      K +K     + I+ 
Sbjct: 71  RKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDK 127

Query: 426 IDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQ 247
           +D +  ++ D  +++ EI   + +     ++ DE+ELM EL+ LE + + + N +     
Sbjct: 128 VDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQE-ELDKNLL----- 181

Query: 246 PDKETDLDSELNLPAAPS-GHAAVPANRQQEDE 151
              E      + LP  PS    + PA +++E++
Sbjct: 182 ---EISGPETVPLPNVPSIALPSKPAKKKEEED 211

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>SNF7_YEAST (P39929) Vacuolar sorting protein SNF7 (DOA4-independent|
           degradation protein 1) (Vacuolar protein
           sorting-associated protein VPS32)
          Length = 240

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
 Frame = -3

Query: 498 QXMTAMKAXNKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNV-PDDIDEE 322
           + M AM+   K +K +   + I+ +D   DE+ + +++ +EI + + R      +++DE+
Sbjct: 102 ETMRAMQEGAKAMKTIHSGLDIDKVDETMDEIREQVELGDEISDAISRPLITGANEVDED 161

Query: 321 ELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPS-----GHAAVPANRQQE 157
           EL  ELD L  +   +  S       +     +++++LP+ PS        +V    ++E
Sbjct: 162 ELDEELDMLAQENANQETSKIVNNNVNAAPISENKVSLPSVPSNKIKQSENSVKDGEEEE 221

Query: 156 DE 151
           DE
Sbjct: 222 DE 223

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>CHM4B_CHICK (Q5ZHP5) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 227

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 4/153 (2%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXN---KELKGMMKTVRIED 427
           ++K YE Q   +      L  + F    +++A      +K      K +K     + I+ 
Sbjct: 73  RKKRYEKQLAQIDG---TLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIDK 129

Query: 426 IDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQ 247
           +D +  ++ +  ++++EI   + +     ++ DE+ELM EL+ LE + + + N +     
Sbjct: 130 VDELMQDIAEQQELADEISTAISKPVGFGEEFDEDELMAELEELEQE-ELDKNLL----- 183

Query: 246 PDKETDLDSELNLPAAPS-GHAAVPANRQQEDE 151
              E      + LP  PS    + PA +++E+E
Sbjct: 184 ---EISGPETVPLPNVPSISIPSKPAKKKEEEE 213

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>CG301_HUMAN (P59074) Protein CGI-301|
          Length = 171

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 6/141 (4%)
 Frame = -3

Query: 597 QRKMYEGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMK---AXNKELKGMMKTVRIED 427
           ++K YE Q   +      L  + F    +++A      +K   +  K  K     + I+ 
Sbjct: 31  RKKRYEKQLAQIDG---TLSTIEFQQQALENANTNTEVLKNMGSAAKAKKAAHDNMDIDK 87

Query: 426 IDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQ 247
           +D +  ++ D  ++  EI   + +     +  DE+ELM EL+ LE +            +
Sbjct: 88  VDELMQDIADQQELGEEISTAISKPVGFGEKSDEDELMAELEELEQE------------E 135

Query: 246 PDK---ETDLDSELNLPAAPS 193
           PDK   E      + LP  PS
Sbjct: 136 PDKNLLEVSGPETVPLPNVPS 156

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>NU159_YEAST (P40477) Nucleoporin NUP159 (Nuclear pore protein NUP159)|
          Length = 1460

 Score = 36.6 bits (83), Expect = 0.057
 Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
 Frame = -3

Query: 408  EMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALE-------ADMDFESNSVPSYL 250
            E  D M ++++  E++  SY+  +DI+ +EL    +A +       AD D +++   +Y 
Sbjct: 1059 ESDDNMSLNSDRDESISESYDKLEDINTDELPHGGEAFKAREVSASADFDVQTSLEDNYA 1118

Query: 249  QPDKETDL-----DSELNLPAAPSGHAAVPANRQQEDEMGLPTVP 130
            +   +TDL     ++E+   A P  H +    +++  + GL T P
Sbjct: 1119 ESGIQTDLSESSKENEVQTDAIPVKHNSTQTVKKEAVDNGLQTEP 1163

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>DNAK_WOLTR (Q5GSE1) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 635

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 20/74 (27%), Positives = 40/74 (54%)
 Frame = -3

Query: 582 EGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDSMQDEM 403
           + Q D L + T    + +    G K + +  +A++    ELK   K+  I+D+DS+Q ++
Sbjct: 526 KNQADSLVHST----EKSLKEYGDKVSPEDKSAIENAVNELKEASKSDNIDDVDSIQQKI 581

Query: 402 MDLMDVSNEIQETL 361
            +L  +S ++ ET+
Sbjct: 582 TNLSQLSMKLGETI 595

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>SYS_VIBPA (Q87QP1) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 435

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
 Frame = -3

Query: 489 TAMKAXNKELKGMMKTVRI--EDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEEL 316
           TA K   +  K  ++T+R   E   S+Q E+ +L    N I + +G+     D    EE+
Sbjct: 14  TAAKLARRGFKLDVETIRKLEEQRKSIQVEVENLQSTRNSISKQIGQKMAAGDKEGAEEI 73

Query: 315 MGELDALEADMDFESNSVPSYL-QPDKETDLDSELNLPAAPSGHAAVPANRQQEDEM 148
             ++  L +D+D +   +   + Q D+ T     L++P  P+    VP  + + D +
Sbjct: 74  KKQIGTLGSDLDAKKVELEQVMAQLDEFT-----LSVPNIPADE--VPDGKDENDNV 123

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>MDN1_YEAST (Q12019) Midasin (MIDAS-containing protein)|
          Length = 4910

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -3

Query: 336  DIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELN 211
            DIDEEE++ ++DA +A+ D +S       +   E D ++EL+
Sbjct: 4547 DIDEEEMLSDIDAHDANNDVDSKKSGFIGKRKSEEDFENELS 4588

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>SQT1_YEAST (P35184) Ribosome assembly protein SQT1|
          Length = 431

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
 Frame = -3

Query: 414 QDEMMDLMDVSNEIQETLGRSYNVPDDI-----DEEELMG-ELDALEADMDFESNSVPSY 253
           Q+E +   +V  EI  T+    +VP DI     D++E+M  + +ALE DM   SN+  +Y
Sbjct: 4   QEEFITTEEVEQEIVPTVEVEQDVPVDIEGENDDDDEMMNDDEEALEVDM---SNNSLTY 60

Query: 252 LQPDKETD----LDSELNLPAAPSG 190
              DK TD    +    NLP   +G
Sbjct: 61  F--DKHTDSVFAIGHHPNLPLVCTG 83

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>APEA_DICDI (P51173) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)|
           (Class II apurinic/apyrimidinic(AP)-endonuclease)
          Length = 361

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 333 IDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQED 154
           +DEEE++ + D  E   + E   V    + DK+  L  +     AP+  AA     + ED
Sbjct: 10  MDEEEILKKEDGSETTSEEEKEEVEEEEEEDKKRKLVKKTPAKKAPAKKAAAKKKSKDED 69

Query: 153 E 151
           E
Sbjct: 70  E 70

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>RPOB_THETN (Q8R7U6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1234

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
 Frame = -3

Query: 486  AMKAXNKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETL------GRSYNVPDDIDE 325
            + K   KEL+ +   V++   D  +  + +  D  +++ +        GR    P+++ E
Sbjct: 1139 SFKVLVKELQSLALDVKVITEDGQEIPIKEFEDDDDDVPDATLNINIEGREDAPPEEVYE 1198

Query: 324  EELMGELDALEADMDFESNSVPSYLQPDKETDLDSE 217
            EE   E + L  D+DFE         PD   D+DSE
Sbjct: 1199 EEYEEEPEELPEDIDFE---------PD-NFDIDSE 1224

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>YJE9_YEAST (P47048) Hypothetical 52.8 kDa protein in MTR4-GYP6 intergenic|
           region
          Length = 450

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
 Frame = -3

Query: 432 EDIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEAD---MDFESNSV 262
           E ++ + DE+ +  D + E+ + L       D+  EEE+  EL+ LE D    + E N  
Sbjct: 341 EKVEDLLDEIKEGHDRTEEVNDLLAHYNKGQDEEAEEEIERELEQLELDEKNNNKEENKN 400

Query: 261 PSYLQPDKET--DLDSELNLPAAPSGHAAVPANRQQEDEM 148
               +P + +  DL   LN     +    V  N   ++E+
Sbjct: 401 QDLHEPKESSSEDLLKRLNNLKINTNEGPVQDNENHDNEI 440

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>DNAK_WOLPM (Q73GL7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 640

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/74 (25%), Positives = 39/74 (52%)
 Frame = -3

Query: 582 EGQRDMLYNQTYNLXQVAFASXGIKDAQQXMTAMKAXNKELKGMMKTVRIEDIDSMQDEM 403
           + Q D L + T    + +    G K + +  +A++    ELK + K+  I+D DS+Q ++
Sbjct: 530 KNQADSLVHST----EKSLTEYGDKVSPEDRSAIENAVNELKEVSKSDNIDDADSIQQKV 585

Query: 402 MDLMDVSNEIQETL 361
            +L  +S ++ E +
Sbjct: 586 TNLSQLSMKLGEAM 599

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>ECX1_METMA (Q8PTT8) Probable exosome complex exonuclease 1 (EC 3.1.13.-)|
          Length = 493

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 393 MDVSNEIQETLGRSYNVPDDIDE--EELMGELDALEADMD-----FESNSVPSYLQPDKE 235
           +++S E++  +  S  +PD  DE  EE+  EL+  E D++     FE  ++    +P+++
Sbjct: 280 VEISEEVEAEILASEVIPDFEDELEEEIEEELEESEEDLETEEEEFEEEALEEEAEPEED 339

Query: 234 TDLDSELNL 208
            + D E +L
Sbjct: 340 LEEDLEEDL 348

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>MLP2_YEAST (P40457) Protein MLP2 (Myosin-like protein 2)|
          Length = 1679

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 24/95 (25%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
 Frame = -3

Query: 492 MTAMKAXN----KELKGMMKTVRIED---IDSMQDEMMDLMDVSNEIQETLGRSYNVPDD 334
           +T+M+A      +EL+  + + ++E+   I +++ E++       + + TL    N    
Sbjct: 606 VTSMEAAREKKIRELEAELSSTKVENSAIIQNLRKELLIYKKSQCKKKTTLEDFENFKGL 665

Query: 333 IDEEELMGE--LDALEADMDFESNSVPSYLQPDKE 235
             E+E M E  +D L+A+++ + + VPSY+  +KE
Sbjct: 666 AKEKERMLEEAIDHLKAELEKQKSWVPSYIHVEKE 700

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>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau|
            kinase)
          Length = 1321

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 24/59 (40%), Positives = 28/59 (47%)
 Frame = +3

Query: 156  PPAAGSPGLLHDHLVQQVS*AQNQDQSPCLVGGTMGLNSIQSPYRLPKHQARP*VPPRR 332
            PPA  SP      L    S A+N   SP     +  L+  +SP   P HQARP VPP R
Sbjct: 1227 PPAPRSP-----RLPASTSAARNASASP----RSQSLSRRESPS--PSHQARPGVPPPR 1274

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>TRI37_HUMAN (O94972) Tripartite motif protein 37 (Mulibrey nanism protein)|
          Length = 964

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -3

Query: 429 DIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSV 262
           D+D + ++ ++ +D S+    +   S    +DIDEE + GE D    +M+ E   +
Sbjct: 519 DLDLVYEDEVNQLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNNMELEEGEL 574

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>RPOE_BACSU (P12464) DNA-directed RNA polymerase delta subunit (RNAP delta|
           factor)
          Length = 173

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = -3

Query: 501 QQXMTAMKAXNKELKGMMKTVRIEDIDSMQDEMMDLMDVS-NEIQETLGRSYNVPDDIDE 325
           ++    +KA  K+ K  ++    ED+D  + E +D  D+  +E++E L       DD DE
Sbjct: 89  EETQPTVKAKKKKAKKAVE----EDLDLDEFEEIDEDDLDLDEVEEELDLE---ADDFDE 141

Query: 324 EELMGELDALEADMDFESNSVPSYLQPDKE 235
           E+L  + D LE + D        Y   ++E
Sbjct: 142 EDLDEDDDDLEIEEDIIDEDDEDYDDEEEE 171

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>ALG10_GIBZE (Q4HZE0) Alpha-1,2 glucosyltransferase ALG10 (EC 2.4.1.-)|
           (Alpha-2-glucosyltransferase ALG10)
           (Dolichyl-phosphoglucose-dependent glucosyltransferase
           ALG10) (Asparagine-linked glycosylation protein 10)
          Length = 722

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  YNEFVHA*TKCGPFTTRSNLHHSFFVNFRYELTRAA 134
           YN  +H      PFT   N H+ F+V FRY + RAA
Sbjct: 477 YNTIIH------PFTLADNRHYMFYV-FRYTIRRAA 505

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>ZN198_MOUSE (Q9CU65) Zinc finger protein 198 (Fragment)|
          Length = 988

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -3

Query: 423 DSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQP 244
           D +  E++ + D+  E +E    + N+   I E +++G      +D D +SN       P
Sbjct: 555 DPLDSELLTMTDMMTE-EEGKAEASNINSVIIETDIIGSDLTKNSDPDIQSN------MP 607

Query: 243 D--KETDLDSELNLPAA 199
           D   E DLD E++ P A
Sbjct: 608 DVPYEPDLDIEIDFPRA 624

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>SMC_METJA (Q59037) Chromosome partition protein smc homolog|
          Length = 1169

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 20/94 (21%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = -3

Query: 513 IKDAQQXMTAMKAXNK-ELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYNVPD 337
           +K+++  +    A N+ EL  + K   + D+D++ +     ++ +NE+ + L       +
Sbjct: 389 LKESEMEIADEIAKNQNELYRLKK--ELNDLDNLINRKNFEIEKNNEMIKKLKEELETVE 446

Query: 336 DIDEEELMGELDALEADMDFESNSVPSYLQPDKE 235
           D+D + L  EL+ L  +++F    +    +  KE
Sbjct: 447 DVDTKPLYLELENLNVEIEFSKRGIKELEEKKKE 480

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>RPOB_DEHSC (Q3ZX01) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1273

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = -3

Query: 513  IKDAQQXMTAMKAXNKELKGMMKTVRIEDIDSMQDEMMDLMD-VSNEI-QETLGRSYNVP 340
            +K+ Q    A++  N+E+K        E + S+ +  +   D +S EI  ETL   Y   
Sbjct: 1186 VKELQSLGLAVEVINEEVK----IAPSEKVSSLNEGNLPASDEISAEILPETL---YANT 1238

Query: 339  DDIDEEELMGELDALEADMDFESN 268
            +DI E+ +M  +DA + D+   SN
Sbjct: 1239 EDISEDSMMSVIDADDQDLVVSSN 1262

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>GVPD2_HALSA (Q9HHT2) Protein gvpD 2|
          Length = 492

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +3

Query: 156 PPAAGSPGLLHDHLVQQVS*AQNQDQS---PCLVGGTMGLNSIQSPYRLPKHQARP 314
           PP  GSPGLLH+ L   +S A             G T   +    P RLP H   P
Sbjct: 318 PPKEGSPGLLHNDLSAVLSKAVFDTHCHVFETYAGPTRDHDDAVDPDRLPGHDTTP 373

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>DBP9_SCHPO (O60080) ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)|
          Length = 595

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 351 YNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSE 217
           Y +    DE  +MGE++ LE ++DF    V S  QP  +   D E
Sbjct: 311 YQIIIATDESGMMGEIEELENNVDFVEEEVISTDQPTLDKMKDQE 355

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>DNAK_EHRRW (Q5HAY1) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 645

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -3

Query: 468 KELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYN 346
           ++LK  +    IED D+MQ+++  LM VS ++ E L  + N
Sbjct: 568 RDLKDCISKDNIEDTDTMQNKLDHLMKVSMKLGEALYSNTN 608

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>DNAK_EHRRG (Q5FFM4) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 645

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -3

Query: 468 KELKGMMKTVRIEDIDSMQDEMMDLMDVSNEIQETLGRSYN 346
           ++LK  +    IED D+MQ+++  LM VS ++ E L  + N
Sbjct: 568 RDLKDCISKDNIEDTDTMQNKLDHLMKVSMKLGEALYSNTN 608

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>TRI37_MOUSE (Q6PCX9) Tripartite motif protein 37|
          Length = 961

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -3

Query: 429 DIDSMQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSV 262
           D+D + ++ ++ +D S+    +   S    +DIDEE + GE D     M+ E   +
Sbjct: 520 DLDLVGEDEVNHLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNSMELEEGEL 575

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>TRPA_BRUSU (Q8FXY6) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 279

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 14/152 (9%)
 Frame = -3

Query: 534 VAFASXGIKDAQQXMTAMKAXNK------ELKGMMKTVRIEDIDSMQDEMMDLMDVSNEI 373
           V +   G  D +  +  MKA  K      EL GM  +  + D  ++Q   +  ++    +
Sbjct: 21  VTYFMGGDPDLETALKVMKALPKAGADVIEL-GMPFSDPMADGPAIQAAGLRALNAGQTL 79

Query: 372 QETL--GRSYNVPDDIDEEELMGELDALEAD------MDFESNSVPSYLQPDKETDLDSE 217
            +TL     +   DD     +MG  + +          D +++ V   +  D  +++D+E
Sbjct: 80  AKTLYMAAEFRKEDDTTPIVMMGYYNPIYVYGVERFLTDAKASGVDGLIVVDLPSEMDAE 139

Query: 216 LNLPAAPSGHAAVPANRQQEDEMGLPTVPHAS 121
           L +PA  +G   +       D+  LP V H S
Sbjct: 140 LCIPAMKAGINFIRLTTPTTDDKRLPKVLHNS 171

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>TRPA_BRUAB (Q57AF2) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 279

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 14/152 (9%)
 Frame = -3

Query: 534 VAFASXGIKDAQQXMTAMKAXNK------ELKGMMKTVRIEDIDSMQDEMMDLMDVSNEI 373
           V +   G  D +  +  MKA  K      EL GM  +  + D  ++Q   +  ++    +
Sbjct: 21  VTYFMGGDPDLETALKVMKALPKAGADVIEL-GMPFSDPMADGPAIQAAGLRALNAGQTL 79

Query: 372 QETL--GRSYNVPDDIDEEELMGELDALEAD------MDFESNSVPSYLQPDKETDLDSE 217
            +TL     +   DD     +MG  + +          D +++ V   +  D  +++D+E
Sbjct: 80  AKTLYMAAEFRKEDDTTPIVMMGYYNPIYVYGVERFLTDAKASGVDGLIVVDLPSEMDAE 139

Query: 216 LNLPAAPSGHAAVPANRQQEDEMGLPTVPHAS 121
           L +PA  +G   +       D+  LP V H S
Sbjct: 140 LCIPAMKAGINFIRLTTPTTDDKRLPKVLHNS 171

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>TOM1_YEAST (Q03280) E3 ubiquitin protein ligase TOM1 (EC 6.3.2.-)|
            (Temperature-dependent organization in mitotic nucleus
            protein 1) (Suppressor of snRNA protein 2)
          Length = 3268

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 330  DEEELMGELDALEADMDFESNSVPSYLQPDKE--TDLDSELN 211
            DE++ MGE DA +A  D E N + S +Q      TD+D E++
Sbjct: 1944 DEDDDMGEEDADDARSDSEENELSSEMQSSTADGTDVDYEVD 1985


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,989,611
Number of Sequences: 219361
Number of extensions: 1466782
Number of successful extensions: 4469
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 4280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4448
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result