ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19b05 |
|---|---|
| Clone Library Name | barley_pub |
>ATG2_DEBHA (Q6BTX0) Autophagy-related protein 2| Length = 1903 Score = 32.7 bits (73), Expect = 1.0 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 14/169 (8%) Frame = -1 Query: 651 PLYDELDFAKEVQVAQEMAKLPVADFSVLKLTLEMPGHVFG------ALVLRLFGLHQIC 490 P +D+L + V+ A LP F+ +L H AL+ + +I Sbjct: 415 PFFDKLRI-HNIIVSATSALLPTGQFASASNSLNFIFHNLNIKYKNEALIYGGIEVFKIV 473 Query: 489 AVT-ERLIVVIPFSHERQACPENC---PCDEPKNWRCQSISLTRLEEVQIHGFTGEDHEY 322 +T ++ I V+ F++ P N P DEP + S + +++ FT D+E Sbjct: 474 KITNDQEIEVLKFNNS--TAPTNTEPNPSDEPAG-STSAPSNSSKADIRFEAFTKLDNEI 530 Query: 321 DFLKL--IFRSSPMLN--RVTLKLVPEFGGSIKEIYDTFSSNPSVKGCV 187 L+ +F +N + L L+ FG S+ IYD++++ S V Sbjct: 531 KHLEFTSLFSKQAFVNLDKSVLLLLSNFGISVSSIYDSYNTMRSTMNSV 579
>Y070_ARCFU (O30166) Hypothetical protein AF0070| Length = 353 Score = 31.6 bits (70), Expect = 2.3 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = -1 Query: 357 QIHGFTGEDHEYDFLKLIFRSSPMLNRVTLKLVPEFGGSIKEIYDTFSSNPSVKGCVYAS 178 QIH F G+D +D+ + S T K V EF G++++I + +K VY Sbjct: 60 QIHKFFGDDQAWDWTFITIGSGQ--REKTKKKVVEFLGNVEDIRNILDGLKELKSPVYIG 117 Query: 177 NG 172 +G Sbjct: 118 SG 119
>SINA_DROME (P21461) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 31.2 bits (69), Expect = 3.1 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = +2 Query: 503 NPKRRNTSAPKTCPGISRVSFNTEKSATGSFAISCATCTSFAKSNSSYNGSG 658 NPKRR +A G + V+ NT S S A + ++ + + S+SS + +G Sbjct: 6 NPKRREPTAAAAGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAG 57
>SINA_DROER (P61093) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 31.2 bits (69), Expect = 3.1 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = +2 Query: 503 NPKRRNTSAPKTCPGISRVSFNTEKSATGSFAISCATCTSFAKSNSSYNGSG 658 NPKRR +A G + V+ NT S S A + ++ + + S+SS + +G Sbjct: 6 NPKRREPTAAAAGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAG 57
>E2AK1_HUMAN (Q9BQI3) Eukaryotic translation initiation factor 2-alpha kinase 1| (EC 2.7.11.1) (Heme-regulated eukaryotic initiation factor eIF-2-alpha kinase) (Heme-regulated inhibitor) (Heme-controlled repressor) (HCR) (Hemin-sensitive initiation factor Length = 630 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -1 Query: 657 PDPLYDELDFAKEVQVAQEMAKLPVADFSV 568 PDP YDE D E+QV +E + P F+V Sbjct: 34 PDPEYDESDVPAEIQVLKEPLQQPTFPFAV 63
>SUR2_CAEEL (Q10669) Protein sur-2| Length = 1587 Score = 30.8 bits (68), Expect = 4.0 Identities = 19/55 (34%), Positives = 27/55 (49%) Frame = +3 Query: 492 KSDVTQRDATQVLQKHVQAFQELASTPRSRQPGASPSLVQLAPLLQSPTHHTMDP 656 K +++ Q ++HV+A Q L STP +Q APLL P+H M P Sbjct: 1388 KEKSPEKEKEQEQEQHVKAHQPLESTPSVSSLPQMQHHLQQAPLL--PSHQMMPP 1440
>FLIA_PSEAE (P29248) RNA polymerase sigma factor for flagellar operon (Sigma-F| factor) (Sigma-28) Length = 247 Score = 30.0 bits (66), Expect = 6.8 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 6/70 (8%) Frame = -1 Query: 666 LSVPDPLYDELDFAKEVQVAQEMAKLPVADFSVL------KLTLEMPGHVFGALVLRLFG 505 LS +P++ LD + +A +AKLP + VL +L L+ G V G R+ Sbjct: 169 LSHNEPIHGLLDERFQAALADAIAKLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQ 228 Query: 504 LHQICAVTER 475 LH CA R Sbjct: 229 LHSQCAARLR 238
>CP17A_HORSE (Q95328) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVII) (P450-C17)| (P450c17) (Steroid 17-alpha-hydroxylase/17,20 lyase) Length = 508 Score = 30.0 bits (66), Expect = 6.8 Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 4/96 (4%) Frame = +1 Query: 163 NQSAIA----GINTTLHRRIR*ESVVDFLDGTSKLRDQFQSHSVKHWRGSEYQF*EIIFM 330 NQ +A G LHR++ + F DG KL E I Sbjct: 108 NQKGVAFADHGAPWQLHRKLVRAAFALFKDGNQKL--------------------EKIIC 147 Query: 331 IFSSEAVDLHFFKTGQRDTLASPIFWLVTRAIFWTC 438 +S DL + GQ L+SP+F VT I W C Sbjct: 148 HETSLLCDLLATQNGQTIDLSSPLFLAVTNVICWIC 183
>LRTM3_MACFA (Q9BGP6) Leucine-rich repeat transmembrane neuronal protein 3| precursor Length = 581 Score = 30.0 bits (66), Expect = 6.8 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Frame = -1 Query: 531 GALVLRLFGLHQICAVTERLIVVIPFSHERQACPENCPCDEPKNWRCQSISLTRLEEVQI 352 G V+RL + V +++ S + CP+ C C E K C+S L + Sbjct: 2 GFNVIRLLSGSAVALVIAPTVLLTMLSSAERGCPKGCRC-EGKMVYCESQKLQEIPSSIS 60 Query: 351 HGFTGEDHEYDFL-KLIFRSSPMLNRVT 271 G G Y+ L KL + LN++T Sbjct: 61 AGCLGLSLRYNSLQKLKYNQFKGLNQLT 88
>LRTM3_HUMAN (Q86VH5) Leucine-rich repeat transmembrane neuronal protein 3| precursor Length = 581 Score = 30.0 bits (66), Expect = 6.8 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Frame = -1 Query: 531 GALVLRLFGLHQICAVTERLIVVIPFSHERQACPENCPCDEPKNWRCQSISLTRLEEVQI 352 G V+RL + V +++ S + CP+ C C E K C+S L + Sbjct: 2 GFNVIRLLSGSAVALVIAPTVLLTMLSSAERGCPKGCRC-EGKMVYCESQKLQEIPSSIS 60 Query: 351 HGFTGEDHEYDFL-KLIFRSSPMLNRVT 271 G G Y+ L KL + LN++T Sbjct: 61 AGCLGLSLRYNSLQKLKYNQFKGLNQLT 88
>ZNFX1_MOUSE (Q8R151) NFX1-type zinc finger-containing protein 1| Length = 1909 Score = 29.6 bits (65), Expect = 8.9 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = -1 Query: 444 RQACPENC-PCDEPKNWRCQSISLTRL 367 ++ C E C PC EP WRCQ T+L Sbjct: 1492 KKKCGELCSPCVEPCVWRCQHYQCTKL 1518
>NAS14_CAEEL (Q19269) Zinc metalloproteinase nas-14 precursor (EC 3.4.24.21)| (Nematode astacin 14) Length = 503 Score = 29.6 bits (65), Expect = 8.9 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +2 Query: 437 ACLSCENGMTTISLSVTAQI*CNPKRRNTSAPKTCPGISRVSFNTEKSAT 586 AC CE +TT + + + N ++ N SA T G S + T K+ T Sbjct: 410 ACNLCEVEVTTTTTTTPKPVPRNKEKENKSASSTTRGTSTATSTTPKTTT 459
>LRTM4_HUMAN (Q86VH4) Leucine-rich repeat transmembrane neuronal protein 4| precursor Length = 518 Score = 29.6 bits (65), Expect = 8.9 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Frame = -1 Query: 525 LVLRLFGLHQICAVTERLIVVIPFSHERQACPENCPCDEPKNWRCQSISLTRLEEVQIHG 346 L+ +L G+ + + L++V+ +R ACP+NC CD K C+S + + E G Sbjct: 5 LITQLKGMSVVLVLLPTLLLVMLTGAQR-ACPKNCRCD-GKIVYCESHAFADIPENISGG 62 Query: 345 FTGEDHEYDFL-KLIFRSSPMLNR-VTLKLVPEFGGSIKEIYDTFSSNPSVKGCVYASN 175 G ++ + KL LN+ + L L + S+ E D F +K + +SN Sbjct: 63 SQGLSLRFNSIQKLKSNQFAGLNQLIWLYLDHNYISSVDE--DAFQGIRRLKELILSSN 119
>ZNFX1_HUMAN (Q9P2E3) NFX1-type zinc finger-containing protein 1| Length = 1918 Score = 29.6 bits (65), Expect = 8.9 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = -1 Query: 444 RQACPENC-PCDEPKNWRCQSISLTRL 367 ++ C E C PC EP WRCQ T+L Sbjct: 1500 KKKCGELCSPCVEPCVWRCQHYQCTKL 1526
>LRTM3_MOUSE (Q8BZ81) Leucine-rich repeat transmembrane neuronal protein 3| precursor Length = 582 Score = 29.6 bits (65), Expect = 8.9 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Frame = -1 Query: 531 GALVLRLFGLHQICAVTERLIVVIPFSHERQACPENCPCDEPKNWRCQSISLTRLEEVQI 352 G V+RL + V +++ S + CP+ C C E K C+S L + Sbjct: 2 GFNVIRLLRGSAVAVVLAPTVLLTMLSSAERGCPKGCRC-EGKMVYCESQKLQEIPSSIS 60 Query: 351 HGFTGEDHEYDFL-KLIFRSSPMLNRVT 271 G G Y+ L KL + LN++T Sbjct: 61 AGCLGLSLRYNSLQKLKYNQFKGLNQLT 88 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,332,435 Number of Sequences: 219361 Number of extensions: 2239965 Number of successful extensions: 5889 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5673 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5883 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
