Clone Information

BLAST Search Result

Clone Name	rbasd19b05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC164437.2\| Mus musculus BAC clone RP23-105B9 from chromosome...	44	0.60
2	gb\|CP000114.1\| Streptococcus agalactiae A909, complete genome	44	0.60
3	gb\|AE014206.1\| Streptococcus agalactiae 2603V/R section 16 of 10...	44	0.60
4	emb\|AL766844.1\|SAG766844 Streptococcus agalactiae NEM316 complet...	44	0.60
5	gb\|AC157919.5\| Mus musculus chromosome 3, clone RP23-131B7, comp...	44	0.60
6	gb\|AC068944.5\| Homo sapiens BAC clone RP11-769N22 from 4, comple...	44	0.60
7	gb\|AC121099.8\| Mus musculus chromosome 3, clone RP24-501F21, com...	44	0.60
8	gb\|AC090377.15\| Homo sapiens chromosome 18, clone RP11-866E20, c...	42	2.4
9	gb\|AC107990.5\| Homo sapiens chromosome 18, clone RP11-103A19, co...	42	2.4
10	gb\|AE016826.1\| Buchnera aphidicola str. Bp (Baizongia pistaciae)...	42	2.4
11	gb\|BC087336.1\| Xenopus laevis hypothetical LOC495962, mRNA (cDNA...	42	2.4
12	gb\|CP000224.1\| Drosophila melanogaster genomic scaffold 21100002...	42	2.4
13	emb\|AL356802.5\|CNS05TDK Human chromosome 14 DNA sequence BAC C-2...	42	2.4
14	gb\|AE014832.1\| Plasmodium falciparum 3D7 chromosome 10 section 4...	40	9.3
15	gb\|AC150707.3\| Bos taurus BAC CH240-275I24 (Children's Hospital...	40	9.3
16	ref\|NM_001039270.1\| Gallus gallus asparagine-linked glycosylatio...	40	9.3
17	gb\|AE008973.1\| Agrobacterium tumefaciens str. C58 AT plasmid sec...	40	9.3
18	gb\|AE007921.1\| Agrobacterium tumefaciens str. C58 plasmid AT, se...	40	9.3
19	emb\|BX088693.15\| Zebrafish DNA sequence from clone CH211-212E22 ...	40	9.3
20	ref\|XM_389002.1\| Gibberella zeae PH-1 chromosome 2 hypothetical ...	40	9.3
21	gb\|AC125219.3\| Mus musculus BAC clone RP23-67O7 from 1, complete...	40	9.3
22	ref\|XM_856053.1\| PREDICTED: Canis familiaris similar to BAI1-ass...	40	9.3
23	ref\|XM_845195.1\| PREDICTED: Canis familiaris similar to BAI1-ass...	40	9.3
24	ref\|XM_536876.2\| PREDICTED: Canis familiaris similar to BAI1-ass...	40	9.3
25	ref\|XM_855969.1\| PREDICTED: Canis familiaris similar to BAI1-ass...	40	9.3
26	emb\|CR376821.11\| Zebrafish DNA sequence from clone CH211-67P11 i...	40	9.3
27	emb\|AL359842.14\| Human DNA sequence from clone RP11-388D4 on chr...	40	9.3
28	emb\|CR536604.6\| Zebrafish DNA sequence from clone DKEY-57A22 in ...	40	9.3
29	emb\|BX901976.22\| Zebrafish DNA sequence from clone DKEY-101P20 i...	40	9.3
30	emb\|AL672225.15\| Mouse DNA sequence from clone RP23-384G1 on chr...	40	9.3
31	emb\|AJ719392.1\| Gallus gallus mRNA for hypothetical protein, clo...	40	9.3
32	emb\|BX072554.8\| Zebrafish DNA sequence from clone DKEY-61M24 in ...	40	9.3
33	emb\|BX548035.8\| Zebrafish DNA sequence from clone CH211-190F24 i...	40	9.3
34	gb\|CP000240.1\| Synechococcus sp. JA-2-3B'a(2-13), complete genome	40	9.3
35	emb\|BX897662.16\| Zebrafish DNA sequence from clone DKEYP-118G6, ...	40	9.3
36	gb\|AY118528.1\| Drosophila melanogaster LD24412 full insert cDNA	40	9.3
37	ref\|NM_206160.1\| Drosophila melanogaster polyA-binding protein C...	40	9.3
38	ref\|NM_166269.1\| Drosophila melanogaster polyA-binding protein C...	40	9.3
39	ref\|NM_166268.2\| Drosophila melanogaster polyA-binding protein C...	40	9.3
40	ref\|NM_166267.1\| Drosophila melanogaster polyA-binding protein C...	40	9.3
41	ref\|NM_166266.1\| Drosophila melanogaster polyA-binding protein C...	40	9.3
42	ref\|NM_166265.1\| Drosophila melanogaster polyA-binding protein C...	40	9.3
43	ref\|NM_166264.1\| Drosophila melanogaster polyA-binding protein C...	40	9.3
44	ref\|NM_057319.3\| Drosophila melanogaster polyA-binding protein C...	40	9.3
45	gb\|AC084209.6\| Homo sapiens BAC clone RP11-462C24 from 4, comple...	40	9.3
46	gb\|AC099039.1\| Drosophila melanogaster, chromosome 2R, region 55...	40	9.3
47	emb\|BX649325.3\| Zebrafish DNA sequence from clone DKEY-81F9 in l...	40	9.3
48	emb\|BX470196.6\| Zebrafish DNA sequence from clone CH211-157J23 i...	40	9.3
49	emb\|BX284646.4\| Zebrafish DNA sequence from clone CH211-49J11 in...	40	9.3
50	emb\|BX537260.8\| Zebrafish DNA sequence from clone DKEY-234J21 in...	40	9.3
51	gb\|L05109.1\|DROPABPX Drosophila melanogaster poly(A)-binding pro...	40	9.3
52	emb\|BX323596.9\| Zebrafish DNA sequence from clone DKEY-210G19 in...	40	9.3
53	gb\|AC013264.4\| Homo sapiens BAC clone RP11-184N4 from 2, complet...	40	9.3
54	gb\|AC154222.2\| Mus musculus BAC clone RP24-375M13 from 13, compl...	40	9.3
55	emb\|BX908748.7\| Zebrafish DNA sequence from clone CH211-215D8 in...	40	9.3
56	emb\|CR388178.5\| Zebrafish DNA sequence from clone DKEY-114D20 in...	40	9.3
57	emb\|BX470238.6\| Zebrafish DNA sequence from clone DKEY-11F14 in ...	40	9.3
58	gb\|AE003800.4\| Drosophila melanogaster chromosome 2R, section 50...	40	9.3
59	gb\|CP000020.1\| Vibrio fischeri ES114 chromosome I, complete sequ...	40	9.3
60	dbj\|AK115069.1\| Ciona intestinalis cDNA, clone:cieg030c04, full ...	40	9.3
61	dbj\|AK112528.1\| Ciona intestinalis cDNA, clone:cicl028p08, full ...	40	9.3
62	emb\|BX088571.5\| Zebrafish DNA sequence from clone CH211-208H7 in...	40	9.3
63	gb\|AC004296.1\|AC004296 Drosophila melanogaster DNA sequence (P1 ...	40	9.3
64	emb\|CR394551.9\| Zebrafish DNA sequence from clone CH211-285E3 in...	40	9.3
65	emb\|BX897750.11\| Zebrafish DNA sequence from clone DKEY-278N18, ...	40	9.3
66	emb\|CR628370.28\| Zebrafish DNA sequence from clone DKEY-33L16 in...	40	9.3

>gb|AC164437.2| Mus musculus BAC clone RP23-105B9 from chromosome 14, complete sequence
          Length = 205044

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 232    ttccttgatggaacctccaaac 253
              ||||||||||||||||||||||
Sbjct: 110033 ttccttgatggaacctccaaac 110012

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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 593    ttcgccatctcttgtgcaactt 614
              ||||||||||||||||||||||
Sbjct: 345958 ttcgccatctcttgtgcaactt 345937

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>gb|AE014206.1| Streptococcus agalactiae 2603V/R section 16 of 100 of the complete
             genome
          Length = 21332

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 593   ttcgccatctcttgtgcaactt 614
             ||||||||||||||||||||||
Sbjct: 13306 ttcgccatctcttgtgcaactt 13285

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>emb|AL766844.1|SAG766844 Streptococcus agalactiae NEM316 complete genome, segment 2
          Length = 240050

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 593    ttcgccatctcttgtgcaactt 614
              ||||||||||||||||||||||
Sbjct: 194815 ttcgccatctcttgtgcaactt 194794

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>gb|AC157919.5| Mus musculus chromosome 3, clone RP23-131B7, complete sequence
          Length = 190453

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 610   aacttgcacctcttttgcaaag 631
             ||||||||||||||||||||||
Sbjct: 48358 aacttgcacctcttttgcaaag 48379

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>gb|AC068944.5| Homo sapiens BAC clone RP11-769N22 from 4, complete sequence
          Length = 169662

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 531    caaaaacatgtccaggcatttc 552
              ||||||||||||||||||||||
Sbjct: 131211 caaaaacatgtccaggcatttc 131190

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>gb|AC121099.8| Mus musculus chromosome 3, clone RP24-501F21, complete sequence
          Length = 157318

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 610   aacttgcacctcttttgcaaag 631
             ||||||||||||||||||||||
Sbjct: 14390 aacttgcacctcttttgcaaag 14369

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>gb|AC090377.15| Homo sapiens chromosome 18, clone RP11-866E20, complete sequence
          Length = 192704

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 228    agatttccttgatggaacctc 248
              |||||||||||||||||||||
Sbjct: 150691 agatttccttgatggaacctc 150711

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>gb|AC107990.5| Homo sapiens chromosome 18, clone RP11-103A19, complete sequence
          Length = 166109

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 228   agatttccttgatggaacctc 248
             |||||||||||||||||||||
Sbjct: 33849 agatttccttgatggaacctc 33869

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>gb|AE016826.1| Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome
          Length = 615980

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 68     ataacaggtaaggataataaa 88
              |||||||||||||||||||||
Sbjct: 485802 ataacaggtaaggataataaa 485822

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>gb|BC087336.1| Xenopus laevis hypothetical LOC495962, mRNA (cDNA clone MGC:99083
           IMAGE:7204160), complete cds
          Length = 818

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 389 tggcatctccaattttttggc 409
           |||||||||||||||||||||
Sbjct: 178 tggcatctccaattttttggc 158

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>gb|CP000224.1| Drosophila melanogaster genomic scaffold 211000022280794
          Length = 474727

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 40     atagttgcatcctcctaactt 60
              |||||||||||||||||||||
Sbjct: 369713 atagttgcatcctcctaactt 369733

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>emb|AL356802.5|CNS05TDK Human chromosome 14 DNA sequence BAC C-2137E9 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 137883

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 306    tcagttttaagaaatcatattcatg 330
              ||||||| |||||||||||||||||
Sbjct: 108088 tcagtttcaagaaatcatattcatg 108064

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>gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete
             sequence
          Length = 258658

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   ttttaagaaatcatattcat 329
             ||||||||||||||||||||
Sbjct: 68527 ttttaagaaatcatattcat 68546

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>gb|AC150707.3| Bos taurus  BAC CH240-275I24 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 153353

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    aagaaatcatattcatgatc 333
              ||||||||||||||||||||
Sbjct: 129632 aagaaatcatattcatgatc 129651

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>ref|NM_001039270.1| Gallus gallus asparagine-linked glycosylation 12 homolog (S.
           cerevisiae, alpha-1,6-mannosyltransferase) (ALG12), mRNA
          Length = 855

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 519 acacaagtgctccaaaaaca 538
           ||||||||||||||||||||
Sbjct: 804 acacaagtgctccaaaaaca 785

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>gb|AE008973.1| Agrobacterium tumefaciens str. C58 AT plasmid section 48 of 49 of the
             complete sequence
          Length = 13875

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 350   tggatctgcacttcttcaagacgg 373
             ||||||||||||||||| ||||||
Sbjct: 12313 tggatctgcacttcttcgagacgg 12336

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>gb|AE007921.1| Agrobacterium tumefaciens str. C58 plasmid AT, section 49 of 50 of the
             complete sequence
          Length = 14010

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 350   tggatctgcacttcttcaagacgg 373
             ||||||||||||||||| ||||||
Sbjct: 12529 tggatctgcacttcttcgagacgg 12552

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>emb|BX088693.15| Zebrafish DNA sequence from clone CH211-212E22 in linkage group 2,
              complete sequence
          Length = 150021

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    ctgaatatcagttttaagaa 318
              ||||||||||||||||||||
Sbjct: 100591 ctgaatatcagttttaagaa 100610

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>ref|XM_389002.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08826.1)
           partial mRNA
          Length = 2052

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 195 ccttcacagaaggattcgat 214
           ||||||||||||||||||||
Sbjct: 113 ccttcacagaaggattcgat 94

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>gb|AC125219.3| Mus musculus BAC clone RP23-67O7 from 1, complete sequence
          Length = 178998

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 422    caattttctggacatgcttg 441
              ||||||||||||||||||||
Sbjct: 123020 caattttctggacatgcttg 123039

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>ref|XM_856053.1| PREDICTED: Canis familiaris similar to BAI1-associated protein
           2-like 1, transcript variant 5 (LOC479748), mRNA
          Length = 1707

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 319 atcatattcatgatcttctc 338
           ||||||||||||||||||||
Sbjct: 734 atcatattcatgatcttctc 715

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>ref|XM_845195.1| PREDICTED: Canis familiaris similar to BAI1-associated protein
           2-like 1, transcript variant 3 (LOC479748), mRNA
          Length = 1700

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 319 atcatattcatgatcttctc 338
           ||||||||||||||||||||
Sbjct: 734 atcatattcatgatcttctc 715

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>ref|XM_536876.2| PREDICTED: Canis familiaris similar to BAI1-associated protein
           2-like 1, transcript variant 1 (LOC479748), mRNA
          Length = 1697

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 319 atcatattcatgatcttctc 338
           ||||||||||||||||||||
Sbjct: 734 atcatattcatgatcttctc 715

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>ref|XM_855969.1| PREDICTED: Canis familiaris similar to BAI1-associated protein
           2-like 1, transcript variant 4 (LOC479748), mRNA
          Length = 1771

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 319 atcatattcatgatcttctc 338
           ||||||||||||||||||||
Sbjct: 734 atcatattcatgatcttctc 715

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>emb|CR376821.11| Zebrafish DNA sequence from clone CH211-67P11 in linkage group 25,
             complete sequence
          Length = 187216

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   ctgaatatcagttttaagaa 318
             ||||||||||||||||||||
Sbjct: 86352 ctgaatatcagttttaagaa 86333

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>emb|AL359842.14| Human DNA sequence from clone RP11-388D4 on chromosome 13 Contains a
            peroxisomal biogenesis factor 12 (PEX12) pseudogene,
            complete sequence
          Length = 136943

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 313  taagaaatcatattcatgat 332
            ||||||||||||||||||||
Sbjct: 7880 taagaaatcatattcatgat 7899

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>emb|CR536604.6| Zebrafish DNA sequence from clone DKEY-57A22 in linkage group 9, complete
              sequence
          Length = 217381

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    ctgaatatcagttttaagaa 318
              ||||||||||||||||||||
Sbjct: 115356 ctgaatatcagttttaagaa 115337

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>emb|BX901976.22| Zebrafish DNA sequence from clone DKEY-101P20 in linkage group 22,
              complete sequence
          Length = 201928

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    ctgaatatcagttttaagaa 318
              ||||||||||||||||||||
Sbjct: 109424 ctgaatatcagttttaagaa 109443

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>emb|AL672225.15| Mouse DNA sequence from clone RP23-384G1 on chromosome 11 Contains the
             5' end of the Spnb2 gene for spectrin beta 2 and a CpG
             island, complete sequence
          Length = 172823

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   tctgatgtaacccaaagaga 514
             ||||||||||||||||||||
Sbjct: 20102 tctgatgtaacccaaagaga 20083

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>emb|AJ719392.1| Gallus gallus mRNA for hypothetical protein, clone 1n22
          Length = 855

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 519 acacaagtgctccaaaaaca 538
           ||||||||||||||||||||
Sbjct: 804 acacaagtgctccaaaaaca 785

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>emb|BX072554.8| Zebrafish DNA sequence from clone DKEY-61M24 in linkage group 7, complete
              sequence
          Length = 190879

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    ctgaatatcagttttaagaa 318
              ||||||||||||||||||||
Sbjct: 143372 ctgaatatcagttttaagaa 143353

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>emb|BX548035.8| Zebrafish DNA sequence from clone CH211-190F24 in linkage group 24,
             complete sequence
          Length = 156349

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   ctgaatatcagttttaagaa 318
             ||||||||||||||||||||
Sbjct: 91583 ctgaatatcagttttaagaa 91564

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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 343     gaagccgtggatctgcactt 362
               ||||||||||||||||||||
Sbjct: 2405265 gaagccgtggatctgcactt 2405246

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>emb|BX897662.16| Zebrafish DNA sequence from clone DKEYP-118G6, complete sequence
          Length = 171928

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    ctgaatatcagttttaagaa 318
              ||||||||||||||||||||
Sbjct: 120138 ctgaatatcagttttaagaa 120157

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>gb|AY118528.1| Drosophila melanogaster LD24412 full insert cDNA
          Length = 2265

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 215 gagaaagtgtcgtagatttccttg 238
           |||||||||||||||||| |||||
Sbjct: 516 gagaaagtgtcgtagattgccttg 493

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>ref|NM_206160.1| Drosophila melanogaster polyA-binding protein CG5119-RH, transcript
           variant H (pAbp), mRNA
          Length = 3388

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 215 gagaaagtgtcgtagatttccttg 238
           |||||||||||||||||| |||||
Sbjct: 864 gagaaagtgtcgtagattgccttg 841

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>ref|NM_166269.1| Drosophila melanogaster polyA-binding protein CG5119-RG, transcript
           variant G (pAbp), mRNA
          Length = 2961

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 215 gagaaagtgtcgtagatttccttg 238
           |||||||||||||||||| |||||
Sbjct: 440 gagaaagtgtcgtagattgccttg 417

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>ref|NM_166268.2| Drosophila melanogaster polyA-binding protein CG5119-RF, transcript
           variant F (pAbp), mRNA
          Length = 3090

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 215 gagaaagtgtcgtagatttccttg 238
           |||||||||||||||||| |||||
Sbjct: 569 gagaaagtgtcgtagattgccttg 546

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>ref|NM_166267.1| Drosophila melanogaster polyA-binding protein CG5119-RE, transcript
           variant E (pAbp), mRNA
          Length = 3019

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 215 gagaaagtgtcgtagatttccttg 238
           |||||||||||||||||| |||||
Sbjct: 498 gagaaagtgtcgtagattgccttg 475

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>ref|NM_166266.1| Drosophila melanogaster polyA-binding protein CG5119-RD, transcript
           variant D (pAbp), mRNA
          Length = 2932

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 215 gagaaagtgtcgtagatttccttg 238
           |||||||||||||||||| |||||
Sbjct: 411 gagaaagtgtcgtagattgccttg 388

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>ref|NM_166265.1| Drosophila melanogaster polyA-binding protein CG5119-RC, transcript
           variant C (pAbp), mRNA
          Length = 3130

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 215 gagaaagtgtcgtagatttccttg 238
           |||||||||||||||||| |||||
Sbjct: 606 gagaaagtgtcgtagattgccttg 583

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>ref|NM_166264.1| Drosophila melanogaster polyA-binding protein CG5119-RB, transcript
           variant B (pAbp), mRNA
          Length = 3475

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 215 gagaaagtgtcgtagatttccttg 238
           |||||||||||||||||| |||||
Sbjct: 951 gagaaagtgtcgtagattgccttg 928

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>ref|NM_057319.3| Drosophila melanogaster polyA-binding protein CG5119-RA, transcript
           variant A (pAbp), mRNA
          Length = 3090

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 215 gagaaagtgtcgtagatttccttg 238
           |||||||||||||||||| |||||
Sbjct: 569 gagaaagtgtcgtagattgccttg 546

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>gb|AC084209.6| Homo sapiens BAC clone RP11-462C24 from 4, complete sequence
          Length = 151980

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   gaaatcatattcatgatctt 335
             ||||||||||||||||||||
Sbjct: 38301 gaaatcatattcatgatctt 38282

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>gb|AC099039.1| Drosophila melanogaster, chromosome 2R, region 55A-55B, BAC clone
             BACR33K09, complete sequence
          Length = 162492

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 215   gagaaagtgtcgtagatttccttg 238
             |||||||||||||||||| |||||
Sbjct: 37017 gagaaagtgtcgtagattgccttg 37040

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>emb|BX649325.3| Zebrafish DNA sequence from clone DKEY-81F9 in linkage group 24, complete
              sequence
          Length = 169135

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    ctgaatatcagttttaagaa 318
              ||||||||||||||||||||
Sbjct: 112483 ctgaatatcagttttaagaa 112502

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>emb|BX470196.6| Zebrafish DNA sequence from clone CH211-157J23 in linkage group 24,
              complete sequence
          Length = 165383

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 299    ctgaatatcagttttaagaaatca 322
              ||||||||||||||||| ||||||
Sbjct: 122707 ctgaatatcagttttaataaatca 122684

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>emb|BX284646.4| Zebrafish DNA sequence from clone CH211-49J11 in linkage group 5,
              complete sequence
          Length = 182774

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    ctgaatatcagttttaagaa 318
              ||||||||||||||||||||
Sbjct: 130799 ctgaatatcagttttaagaa 130818

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>emb|BX537260.8| Zebrafish DNA sequence from clone DKEY-234J21 in linkage group 1,
              complete sequence
          Length = 150038

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    ctgaatatcagttttaagaa 318
              ||||||||||||||||||||
Sbjct: 100697 ctgaatatcagttttaagaa 100678

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>gb|L05109.1|DROPABPX Drosophila melanogaster poly(A)-binding protein (PABP) mRNA,
           complete cds
          Length = 2386

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 215 gagaaagtgtcgtagatttccttg 238
           |||||||||||||||||| |||||
Sbjct: 473 gagaaagtgtcgtagattgccttg 450

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>emb|BX323596.9| Zebrafish DNA sequence from clone DKEY-210G19 in linkage group 5,
             complete sequence
          Length = 251428

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   ctgaatatcagttttaagaa 318
             ||||||||||||||||||||
Sbjct: 45046 ctgaatatcagttttaagaa 45027

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>gb|AC013264.4| Homo sapiens BAC clone RP11-184N4 from 2, complete sequence
          Length = 149445

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   agttttaagaaatcatattc 327
             ||||||||||||||||||||
Sbjct: 19380 agttttaagaaatcatattc 19361

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>gb|AC154222.2| Mus musculus BAC clone RP24-375M13 from 13, complete sequence
          Length = 169114

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   agtttcagagtcactctgtt 282
             ||||||||||||||||||||
Sbjct: 71654 agtttcagagtcactctgtt 71673

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>emb|BX908748.7| Zebrafish DNA sequence from clone CH211-215D8 in linkage group 18,
              complete sequence
          Length = 212425

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    ctgaatatcagttttaagaa 318
              ||||||||||||||||||||
Sbjct: 173578 ctgaatatcagttttaagaa 173559

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>emb|CR388178.5| Zebrafish DNA sequence from clone DKEY-114D20 in linkage group 22,
              complete sequence
          Length = 171742

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    ctgaatatcagttttaagaa 318
              ||||||||||||||||||||
Sbjct: 149635 ctgaatatcagttttaagaa 149654

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>emb|BX470238.6| Zebrafish DNA sequence from clone DKEY-11F14 in linkage group 19,
             complete sequence
          Length = 145503

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   aggatctgaatatcagtttt 313
             ||||||||||||||||||||
Sbjct: 59608 aggatctgaatatcagtttt 59589

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>gb|AE003800.4| Drosophila melanogaster chromosome 2R, section 50 of 73 of the complete
             sequence
          Length = 255380

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 215   gagaaagtgtcgtagatttccttg 238
             |||||||||||||||||| |||||
Sbjct: 86489 gagaaagtgtcgtagattgccttg 86466

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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     tgctcatcagatagttgctg 162
               ||||||||||||||||||||
Sbjct: 2265377 tgctcatcagatagttgctg 2265396

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>dbj|AK115069.1| Ciona intestinalis cDNA, clone:cieg030c04, full insert sequence
          Length = 1089

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 gatggaacctccaaactcag 257
           ||||||||||||||||||||
Sbjct: 655 gatggaacctccaaactcag 636

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>dbj|AK112528.1| Ciona intestinalis cDNA, clone:cicl028p08, full insert sequence
          Length = 1091

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 gatggaacctccaaactcag 257
           ||||||||||||||||||||
Sbjct: 657 gatggaacctccaaactcag 638

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>emb|BX088571.5| Zebrafish DNA sequence from clone CH211-208H7 in linkage group 1,
              complete sequence
          Length = 214441

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    ctgaatatcagttttaagaa 318
              ||||||||||||||||||||
Sbjct: 165049 ctgaatatcagttttaagaa 165068

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>gb|AC004296.1|AC004296 Drosophila melanogaster DNA sequence (P1 DS08860 (D181)), complete
             sequence
          Length = 78054

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 215   gagaaagtgtcgtagatttccttg 238
             |||||||||||||||||| |||||
Sbjct: 67405 gagaaagtgtcgtagattgccttg 67428

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>emb|CR394551.9| Zebrafish DNA sequence from clone CH211-285E3 in linkage group 10,
            complete sequence
          Length = 121335

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 299  ctgaatatcagttttaagaa 318
            ||||||||||||||||||||
Sbjct: 9830 ctgaatatcagttttaagaa 9811

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>emb|BX897750.11| Zebrafish DNA sequence from clone DKEY-278N18, complete sequence
          Length = 182033

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    ctgaatatcagttttaagaa 318
              ||||||||||||||||||||
Sbjct: 133048 ctgaatatcagttttaagaa 133029

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>emb|CR628370.28| Zebrafish DNA sequence from clone DKEY-33L16 in linkage group 22,
             complete sequence
          Length = 190967

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   ctgaatatcagttttaagaa 318
             ||||||||||||||||||||
Sbjct: 62626 ctgaatatcagttttaagaa 62645


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,537,985
Number of Sequences: 3902068
Number of extensions: 5537985
Number of successful extensions: 100181
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99992
Number of HSP's gapped (non-prelim): 189
length of query: 681
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 658
effective length of database: 17,143,297,704
effective search space: 11280289889232
effective search space used: 11280289889232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result