>YCF24_PORPU (P51240) Hypothetical UPF0051 protein ycf24 (ORF487)|
          Length = 487

 Score = 99.4 bits (246), Expect = 4e-21
 Identities = 49/80 (61%), Positives = 60/80 (75%)
 Frame = -1

Query: 443 ANTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLP 264
           ANT+P IQV   + +VEH ASTSKI EDQ+FYF QRGI+ E+ V+ MI GFC+ VF  LP
Sbjct: 408 ANTFPYIQVQNPTAKVEHEASTSKISEDQIFYFLQRGINLEESVSLMISGFCKDVFNELP 467

Query: 263 XEFAQXVDALMNLKLEGSVG 204
            EFA   D L++LKLEG+VG
Sbjct: 468 MEFAVEADRLLSLKLEGTVG 487

>YCF24_GUITH (O78473) Hypothetical UPF0051 protein ycf24|
          Length = 483

 Score = 99.0 bits (245), Expect = 5e-21
 Identities = 49/80 (61%), Positives = 58/80 (72%)
 Frame = -1

Query: 443 ANTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLP 264
           ANTYP IQV     RVEH ASTSKI E+QLFYF QRGI  E+ ++ +I GFCR VF  LP
Sbjct: 404 ANTYPYIQVSNAMSRVEHEASTSKIEEEQLFYFLQRGISVEQAISLLISGFCRDVFVKLP 463

Query: 263 XEFAQXVDALMNLKLEGSVG 204
            EFA   D L+++KLEG+VG
Sbjct: 464 MEFAVEADKLLSVKLEGTVG 483

>YCF24_CYAPA (P48260) Hypothetical UPF0051 protein ycf24|
          Length = 486

 Score = 97.4 bits (241), Expect = 1e-20
 Identities = 46/80 (57%), Positives = 60/80 (75%)
 Frame = -1

Query: 443 ANTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLP 264
           ANT+P +Q+   + +VEH ASTSKI E+Q+FYF QRGI+ E+ ++ +I GFCR VF +LP
Sbjct: 407 ANTFPHLQIKNPTAKVEHEASTSKIGEEQIFYFLQRGINAEEAISLIISGFCREVFNNLP 466

Query: 263 XEFAQXVDALMNLKLEGSVG 204
            EFA   D L+ LKLEGSVG
Sbjct: 467 MEFALEADKLLGLKLEGSVG 486

>Y074_SYNY3 (Q55790) Hypothetical UPF0051 protein slr0074|
          Length = 480

 Score = 97.4 bits (241), Expect = 1e-20
 Identities = 47/80 (58%), Positives = 57/80 (71%)
 Frame = -1

Query: 443 ANTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLP 264
           ANT+P IQV   + +VEH ASTSKI EDQLFYF QRGI  E  V+ ++ GFC+ V   LP
Sbjct: 401 ANTFPYIQVDNNTAKVEHEASTSKIGEDQLFYFAQRGISEEDAVSMLVSGFCKDVLNELP 460

Query: 263 XEFAQXVDALMNLKLEGSVG 204
            EFA   D L++LKLEG+VG
Sbjct: 461 MEFAAEADKLLSLKLEGTVG 480

>YCF24_ODOSI (P49530) Hypothetical UPF0051 protein ycf24 (ORF486)|
          Length = 486

 Score = 96.3 bits (238), Expect = 3e-20
 Identities = 48/80 (60%), Positives = 56/80 (70%)
 Frame = -1

Query: 443 ANTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLP 264
           ANT+P I V   + ++EH ASTSKI E+Q+FYF QRGI  EK V  MI GFC+ VF  LP
Sbjct: 407 ANTFPFISVQNPTAKIEHEASTSKIGEEQIFYFLQRGIPIEKGVELMISGFCQEVFTELP 466

Query: 263 XEFAQXVDALMNLKLEGSVG 204
            EFA   D L+ LKLEGSVG
Sbjct: 467 LEFAAEADRLLTLKLEGSVG 486

>YCF24_ANTSP (Q02857) Hypothetical UPF0051 protein in atpA 3'region (ORF 3)|
           (Fragment)
          Length = 297

 Score = 92.8 bits (229), Expect = 3e-19
 Identities = 45/80 (56%), Positives = 56/80 (70%)
 Frame = -1

Query: 443 ANTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLP 264
           ANT+P IQ      ++EH ASTSKI E+Q+FYF QRGI+ E  ++ MI GFC+ V   LP
Sbjct: 218 ANTFPYIQAQNPYTKIEHEASTSKIGEEQIFYFLQRGINLENAISLMISGFCKEVLNELP 277

Query: 263 XEFAQXVDALMNLKLEGSVG 204
            EFA   D L+NLKLEG+VG
Sbjct: 278 MEFAVEADRLLNLKLEGTVG 297

>YCF24_GALSU (P35912) Hypothetical UPF0051 protein in atpA 3'region (ORF X)|
           (Fragment)
          Length = 221

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 44/80 (55%), Positives = 56/80 (70%)
 Frame = -1

Query: 443 ANTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLP 264
           ANT+P I+V   S  +EH AS SKI E++LFYF QRGI  E+ ++ ++ GFC+ VF  LP
Sbjct: 142 ANTFPYIEVYNRSSIIEHEASISKINEEKLFYFMQRGISIEEAISLIVSGFCKEVFTELP 201

Query: 263 XEFAQXVDALMNLKLEGSVG 204
            EFA   D L+ LKLEGSVG
Sbjct: 202 LEFALEADKLLGLKLEGSVG 221

>YCF24_CYACA (Q9TLX2) Hypothetical UPF0051 protein ycf24|
          Length = 483

 Score = 84.7 bits (208), Expect = 9e-17
 Identities = 39/80 (48%), Positives = 56/80 (70%)
 Frame = -1

Query: 443 ANTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLP 264
           +NTYP + V  +  +VEH A  S+I E+Q+FYFQQRGI+ E+ +  ++ GFC+ V   LP
Sbjct: 404 SNTYPNLHVHNSLSKVEHEAFVSRIGEEQIFYFQQRGINIEEALNMIVSGFCQDVCNKLP 463

Query: 263 XEFAQXVDALMNLKLEGSVG 204
            EFA   + L+N+KLEGS+G
Sbjct: 464 MEFALEANKLLNIKLEGSIG 483

>SUFB_SHIFL (Q83KW2) Protein sufB|
          Length = 495

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 37/80 (46%), Positives = 52/80 (65%)
 Frame = -1

Query: 443 ANTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLP 264
           A+T+P ++    S ++EH A+TS+I EDQLFY  QRGI  E  ++ ++ GFC+ VF  LP
Sbjct: 416 AHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQRGISEEDAISMIVNGFCKDVFSELP 475

Query: 263 XEFAQXVDALMNLKLEGSVG 204
            EFA     L+ + LE SVG
Sbjct: 476 LEFAVEAQKLLAISLEHSVG 495

>SUFB_ECOLI (P77522) Protein sufB|
          Length = 495

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 37/80 (46%), Positives = 52/80 (65%)
 Frame = -1

Query: 443 ANTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLP 264
           A+T+P ++    S ++EH A+TS+I EDQLFY  QRGI  E  ++ ++ GFC+ VF  LP
Sbjct: 416 AHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQRGISEEDAISMIVNGFCKDVFSELP 475

Query: 263 XEFAQXVDALMNLKLEGSVG 204
            EFA     L+ + LE SVG
Sbjct: 476 LEFAVEAQKLLAISLEHSVG 495

>Y1496_MYCBO (P67126) Hypothetical UPF0051 protein Mb1496 [Contains: Endonuclease|
            PI-MtuHIIP (EC 3.1.-.-) (Mtu pps1 intein)]
          Length = 846

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 27/80 (33%), Positives = 49/80 (61%)
 Frame = -1

Query: 443  ANTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLP 264
            ++TYP + +      + H A+ SK+ E+QLFY   RG+  ++ +A ++ GF   +   LP
Sbjct: 767  SDTYPYVDIREDDVTMGHEATVSKVSENQLFYLMSRGLTEDEAMAMVVRGFVEPIAKELP 826

Query: 263  XEFAQXVDALMNLKLEGSVG 204
             E+A  ++ L+ L++EG+VG
Sbjct: 827  MEYALELNRLIELQMEGAVG 846

>Y1461_MYCTU (P67125) Hypothetical UPF0051 protein Rv1461/MT1508 [Contains:|
            Endonuclease PI-MtuHIIP (EC 3.1.-.-) (Mtu pps1 intein)]
          Length = 846

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 27/80 (33%), Positives = 49/80 (61%)
 Frame = -1

Query: 443  ANTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLP 264
            ++TYP + +      + H A+ SK+ E+QLFY   RG+  ++ +A ++ GF   +   LP
Sbjct: 767  SDTYPYVDIREDDVTMGHEATVSKVSENQLFYLMSRGLTEDEAMAMVVRGFVEPIAKELP 826

Query: 263  XEFAQXVDALMNLKLEGSVG 204
             E+A  ++ L+ L++EG+VG
Sbjct: 827  MEYALELNRLIELQMEGAVG 846

>Y593_MYCLE (Q49689) Hypothetical UPF0051 protein ML0593 [Contains: Mle pps1|
            intein]
          Length = 869

 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 27/80 (33%), Positives = 49/80 (61%)
 Frame = -1

Query: 443  ANTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLP 264
            ++TYP + +      + H A+ SK+ E+QLFY   RG+  ++ +A ++ GF   +   LP
Sbjct: 790  SDTYPYVDIREDDVTMGHEATVSKVSENQLFYLMSRGLAEDEAMAMVVRGFVEPIAKELP 849

Query: 263  XEFAQXVDALMNLKLEGSVG 204
             E+A  ++ L+ L++EG+VG
Sbjct: 850  MEYALELNRLIELQMEGAVG 869

>Y1385_PYRHO (O50093) Hypothetical UPF0051 protein PH1385|
          Length = 446

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = -1

Query: 437 TYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLPXE 258
           TYP +        + H A+  KI E++LFY   RG+  EK    ++ GF   +   +P E
Sbjct: 370 TYPGLVSLVDEAELSHEAAIGKIKEEELFYLMSRGLSEEKATQLIVKGFVEPMLKDIPIE 429

Query: 257 FAQXVDALMNLKLEG 213
           F   +  ++ L + G
Sbjct: 430 FVVEIKKIIELAVSG 444

>Y2365_ARCFU (O30305) Hypothetical UPF0051 protein AF2365|
          Length = 369

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = -1

Query: 431 PTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLPXEFA 252
           P ++    +  + H A+  KI E+ +FY   RG+  ++ ++A++ GF       LP    
Sbjct: 295 PELEARYPNVELSHEAAIGKIAEEGIFYLMSRGLSRDEAISAIVRGFMEIEIKGLPEALQ 354

Query: 251 QXV 243
           + +
Sbjct: 355 EAI 357

>Y076_SYNY3 (Q55792) Hypothetical UPF0051 protein slr0076|
          Length = 453

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -1

Query: 440 NTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLP 264
           NT P +Q+   + +  H A+ S++  D++FY + RG++       +I  F   +   +P
Sbjct: 378 NTKPELQITADNVKCSHGATISQLEADEVFYLRSRGLNDYDARHLLIDAFAGEILDQIP 436

>SUFD_ECOLI (P77689) Protein sufD|
          Length = 423

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -1

Query: 440 NTYPTIQVGCTSGRVEHXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGFCRAVFXHLPX 261
           +T P +++     +  H A+  +I ++Q+FY + RGI+ +     +I  F   +   L  
Sbjct: 344 DTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRD 403

Query: 260 E-FAQXVDALMNLKLEG 213
           E   Q V A +  +L G
Sbjct: 404 EGLKQQVLARIGQRLPG 420

>Y594_MYCLE (Q49682) Hypothetical UPF0051 protein ML0594|
          Length = 392

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 392 HXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGF 291
           H ++T +  ++QLFY + RGI  E+    ++ GF
Sbjct: 324 HASATGRFDDEQLFYLRSRGIGEEQARRLLVRGF 357

>Y1497_MYCBO (P59973) Hypothetical UPF0051 protein Mb1497|
          Length = 397

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 392 HXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGF 291
           H ++T +  ++QLFY + RGI   +    ++ GF
Sbjct: 327 HASATGRFDDEQLFYLRSRGIPEAQARRLVVRGF 360

>Y1462_MYCTU (O53153) Hypothetical UPF0051 protein Rv1462/MT1509|
          Length = 397

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 392 HXASTSKIXEDQLFYFQQRGIDHEKXVAAMIGGF 291
           H ++T +  ++QLFY + RGI   +    ++ GF
Sbjct: 327 HASATGRFDDEQLFYLRSRGIPEAQARRLVVRGF 360


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,336,776
Number of Sequences: 219361
Number of extensions: 1003787
Number of successful extensions: 1706
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1706
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)