ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18d18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021G10, full insert sequence Length = 1814 Score = 476 bits (240), Expect = e-131 Identities = 469/544 (86%), Gaps = 1/544 (0%) Strand = Plus / Minus Query: 170 gattctggtttcttgatctgcttctgcaactgcggcaagtcatgctcaagcacatcgcta 229 ||||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||| Sbjct: 1523 gattctgtcttcttgatctgcttctgcagctgtggcaggtcatgctcaagcacatcgctg 1464 Query: 230 agtgcctttgatgcctctgcgagctcctcgggactgatcgaaatgggaggggctaatcgg 289 | ||||| ||||| ||||| |||||||| |||||||| || | ||||| ||||||| | Sbjct: 1463 aacgccttcgatgcttctgcaagctcctcaggactgattgacagcggaggcgctaatctg 1404 Query: 290 attatggtgtcatgcgtgggctttgctagaatgcccctctcctttagcttgatgcaaata 349 |||||||||||||| ||||||||||| |||| ||| |||||||| ||||||||||| || Sbjct: 1403 attatggtgtcatgtgtgggctttgccagaacgcctctctccttcagcttgatgcagatg 1344 Query: 350 tcatatgcagaagcagggtatagagctttgctgcttaggtctacagcattaagcaaacct 409 || || |||||||||||| ||| ||||| | ||||||| || || |||||||||||||| Sbjct: 1343 tcgtaagcagaagcaggggataaagcttcgttgcttagatccactgcattaagcaaaccc 1284 Query: 410 ctcccgcgtatttccctgataatatgaggaaatttctgctgaacctcttgtaactggtcc 469 ||||| |||| |||||| || || || || ||| |||| ||||||| |||| ||| || Sbjct: 1283 ctcccacgtacttcccttatgatttgcgggaatctctgttgaaccttctgtagctgatct 1224 Query: 470 ctgaactcctgacctaactccgcggctctttcaacaagaccttcatctttgaccactttc 529 |||||||| || ||||||| || || |||||||| |||||||||||| | || |||||| Sbjct: 1223 ctgaactcttgtcctaactttgcagccctttcaacgagaccttcatctgtaactactttc 1164 Query: 530 agtgatgcgattgccacagcacttgccaatgggtttccaccaaatgtacttccatgttct 589 |||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1163 agtgatgcaactgccacagcacttgccaatgggttcccaccaaatgtacttccatgttct 1104 Query: 590 cctggcttgatacacagcatgatatccttatcagcaagaactgcactgaccggaactact 649 ||||| |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||| Sbjct: 1103 cctggtttgatacacagcataatatccttatctgcaagaaccgcactgacaggaactact 1044 Query: 650 ccagcacctagtgccttgcctagaatcaccatatcaaggtcgtacatcttcccaatcaca 709 |||||||| || ||||||||||||||||||| ||| |||||||| | ||||||||| || Sbjct: 1043 ccagcaccaagggccttgcctagaatcaccacatc-aggtcgtatgttttcccaatcgca 985 Query: 710 tgcc 713 |||| Sbjct: 984 tgcc 981
>gb|AY107876.1| Zea mays PCO089175 mRNA sequence Length = 1203 Score = 353 bits (178), Expect = 5e-94 Identities = 438/525 (83%), Gaps = 6/525 (1%) Strand = Plus / Minus Query: 163 tgcctccgattctggtttcttgatctgcttctgcaactgc------ggcaagtcatgctc 216 |||||| |||||||| || || ||||||||||||| |||| |||||||||||||| Sbjct: 906 tgcctcagattctggcttttttatctgcttctgcagctgcagctgtggcaagtcatgctc 847 Query: 217 aagcacatcgctaagtgcctttgatgcctctgcgagctcctcgggactgatcgaaatggg 276 ||||| || ||||| ||||| ||||| ||||| |||||||| |||||||| | | ||| Sbjct: 846 cagcacgtcactaagcgccttggatgcttctgcaagctcctcaggactgattgtgagggg 787 Query: 277 aggggctaatcggattatggtgtcatgcgtgggctttgctagaatgcccctctcctttag 336 ||| || | ||||||||| |||||||| ||||| || |||| |||||| |||||||| | Sbjct: 786 aggagcaagtcggattatagtgtcatgtgtgggtttcgctaaaatgcctctctccttcaa 727 Query: 337 cttgatgcaaatatcatatgcagaagcagggtatagagctttgctgcttaggtctacagc 396 ||||||||| || ||||||||||||||||| |||| || | | || |||| || || || Sbjct: 726 cttgatgcagatgtcatatgcagaagcaggagatagcgcgtcgttgtttagatccactgc 667 Query: 397 attaagcaaacctctcccgcgtatttccctgataatatgaggaaatttctgctgaacctc 456 || |||||||| |||||||| | ||| || | || ||||| ||||||||||| |||| Sbjct: 666 gttcagcaaacccctcccgcgcacttctcttaggatttgagggaatttctgctggacctt 607 Query: 457 ttgtaactggtccctgaactcctgacctaactccgcggctctttcaacaagaccttcatc 516 |||||||||||||| |||||||| ||||||| || || ||||||||||||||||| || Sbjct: 606 ctgtaactggtccctaaactcctgtcctaactttgcagccctttcaacaagaccttcgtc 547 Query: 517 tttgaccactttcagtgatgcgattgccacagcacttgccaatgggtttccaccaaatgt 576 | ||||||||||||||||||| | ||||||||| || || || || || ||||| ||||| Sbjct: 546 tctgaccactttcagtgatgcaactgccacagcgctagctaacggattcccaccgaatgt 487 Query: 577 acttccatgttctcctggcttgatacacagcatgatatccttatcagcaagaactgcact 636 |||||||||||| ||||| ||||||||||||||| |||||| || |||||||||||||| Sbjct: 486 acttccatgttcccctggtctgatacacagcatgacatccttgtctgcaagaactgcact 427 Query: 637 gaccggaactactccagcacctagtgccttgcctagaatcaccat 681 ||| ||||| ||||||||||| ||||| ||||||||||||||||| Sbjct: 426 gactggaacaactccagcaccgagtgctttgcctagaatcaccat 382
>gb|BT024061.1| Zea mays clone EL01N0441H04 mRNA sequence Length = 1350 Score = 337 bits (170), Expect = 3e-89 Identities = 436/525 (83%), Gaps = 6/525 (1%) Strand = Plus / Minus Query: 163 tgcctccgattctggtttcttgatctgcttctgcaactgc------ggcaagtcatgctc 216 |||||| |||||||| || || ||||||||||||| |||| ||||||||||| || Sbjct: 1065 tgcctcagattctggcttttttatctgcttctgcagctgcagctgtggcaagtcatgttc 1006 Query: 217 aagcacatcgctaagtgcctttgatgcctctgcgagctcctcgggactgatcgaaatggg 276 ||||| || ||||| ||||| ||||| ||||| |||||||| |||||||| | | ||| Sbjct: 1005 cagcacgtcactaagcgccttggatgcttctgcaagctcctcaggactgattgtgagggg 946 Query: 277 aggggctaatcggattatggtgtcatgcgtgggctttgctagaatgcccctctcctttag 336 ||| || | ||||||||| |||||||| ||||| || |||| |||||| |||||||| | Sbjct: 945 aggagcaagtcggattatagtgtcatgtgtgggtttcgctaaaatgcctctctccttcaa 886 Query: 337 cttgatgcaaatatcatatgcagaagcagggtatagagctttgctgcttaggtctacagc 396 ||||||||| || ||||||||||||||||| |||| || | | || |||| || || || Sbjct: 885 cttgatgcagatgtcatatgcagaagcaggagatagcgcgtcgttgtttagatccactgc 826 Query: 397 attaagcaaacctctcccgcgtatttccctgataatatgaggaaatttctgctgaacctc 456 || |||||||| |||||||| | ||| || | || ||||| ||||||||||| |||| Sbjct: 825 gttcagcaaacccctcccgcgcacttctcttaggatttgagggaatttctgctggacctt 766 Query: 457 ttgtaactggtccctgaactcctgacctaactccgcggctctttcaacaagaccttcatc 516 |||||||||||||| |||||||| ||||||| || || ||||||||||||||||| || Sbjct: 765 ctgtaactggtccctaaactcctgtcctaactttgcagccctttcaacaagaccttcgtc 706 Query: 517 tttgaccactttcagtgatgcgattgccacagcacttgccaatgggtttccaccaaatgt 576 | ||||||||||||||||||| | ||||||||| || || || || || ||||| ||||| Sbjct: 705 tctgaccactttcagtgatgcaactgccacagcgctagctaacggattcccaccgaatgt 646 Query: 577 acttccatgttctcctggcttgatacacagcatgatatccttatcagcaagaactgcact 636 |||||||||||| ||||| ||||||||||||||| |||| | || |||||||||||||| Sbjct: 645 acttccatgttcccctggtctgatacacagcatgacatccctgtctgcaagaactgcact 586 Query: 637 gaccggaactactccagcacctagtgccttgcctagaatcaccat 681 ||| ||||| ||||||||||| ||||| ||||||||||||||||| Sbjct: 585 gactggaacaactccagcaccgagtgctttgcctagaatcaccat 541
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 147 bits (74), Expect = 6e-32 Identities = 179/214 (83%) Strand = Plus / Plus Query: 275 ggaggggctaatcggattatggtgtcatgcgtgggctttgctagaatgcccctctccttt 334 ||||| ||||||| ||||||||||||||| ||||||||||| |||| ||| |||||||| Sbjct: 77895 ggaggcgctaatctgattatggtgtcatgtgtgggctttgccagaacgcctctctccttc 77954 Query: 335 agcttgatgcaaatatcatatgcagaagcagggtatagagctttgctgcttaggtctaca 394 ||||||||||| || || || |||||||||||| ||| ||||| | ||||||| || || Sbjct: 77955 agcttgatgcagatgtcgtaagcagaagcaggggataaagcttcgttgcttagatccact 78014 Query: 395 gcattaagcaaacctctcccgcgtatttccctgataatatgaggaaatttctgctgaacc 454 |||||||||||||| ||||| |||| |||||| || || || || ||| |||| |||||| Sbjct: 78015 gcattaagcaaacccctcccacgtacttcccttatgatttgcgggaatctctgttgaacc 78074 Query: 455 tcttgtaactggtccctgaactcctgacctaact 488 | |||| ||| || |||||||| || ||||||| Sbjct: 78075 ttctgtagctgatctctgaactcttgtcctaact 78108 Score = 141 bits (71), Expect = 4e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 578 cttccatgttctcctggcttgatacacagcatgatatccttatcagcaagaactgcactg 637 ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 78524 cttccatgttctcctggtttgatacacagcataatatccttatctgcaagaaccgcactg 78583 Query: 638 accggaactactccagcacctagtgccttgcctagaatc 676 || ||||||||||||||||| || ||||||||||||||| Sbjct: 78584 acaggaactactccagcaccaagggccttgcctagaatc 78622 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Plus Query: 497 ctttcaacaagaccttcatctttgaccactttcagtgatgcgattgccacagcacttgcc 556 |||||||| |||||||||||| | || |||||||||||||| | |||||||||||||||| Sbjct: 78233 ctttcaacgagaccttcatctgtaactactttcagtgatgcaactgccacagcacttgcc 78292 Query: 557 aatgggtttccaccaaatgtact 579 |||||||| |||||||||||||| Sbjct: 78293 aatgggttcccaccaaatgtact 78315 Score = 97.6 bits (49), Expect = 5e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 170 gattctggtttcttgatctgcttctgcaactgcggcaagtcatgctcaagcacatcgcta 229 ||||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||| Sbjct: 74009 gattctgtcttcttgatctgcttctgcagctgtggcaggtcatgctcaagcacatcgctg 74068 Query: 230 agtgcctttgatgcctctgcgagctcctcgggactga 266 | ||||| ||||| ||||| |||||||| ||||||| Sbjct: 74069 aacgccttcgatgcttctgcaagctcctcaggactga 74105
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 147 bits (74), Expect = 6e-32 Identities = 179/214 (83%) Strand = Plus / Plus Query: 275 ggaggggctaatcggattatggtgtcatgcgtgggctttgctagaatgcccctctccttt 334 ||||| ||||||| ||||||||||||||| ||||||||||| |||| ||| |||||||| Sbjct: 24702348 ggaggcgctaatctgattatggtgtcatgtgtgggctttgccagaacgcctctctccttc 24702407 Query: 335 agcttgatgcaaatatcatatgcagaagcagggtatagagctttgctgcttaggtctaca 394 ||||||||||| || || || |||||||||||| ||| ||||| | ||||||| || || Sbjct: 24702408 agcttgatgcagatgtcgtaagcagaagcaggggataaagcttcgttgcttagatccact 24702467 Query: 395 gcattaagcaaacctctcccgcgtatttccctgataatatgaggaaatttctgctgaacc 454 |||||||||||||| ||||| |||| |||||| || || || || ||| |||| |||||| Sbjct: 24702468 gcattaagcaaacccctcccacgtacttcccttatgatttgcgggaatctctgttgaacc 24702527 Query: 455 tcttgtaactggtccctgaactcctgacctaact 488 | |||| ||| || |||||||| || ||||||| Sbjct: 24702528 ttctgtagctgatctctgaactcttgtcctaact 24702561 Score = 141 bits (71), Expect = 4e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 578 cttccatgttctcctggcttgatacacagcatgatatccttatcagcaagaactgcactg 637 ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 24702977 cttccatgttctcctggtttgatacacagcataatatccttatctgcaagaaccgcactg 24703036 Query: 638 accggaactactccagcacctagtgccttgcctagaatc 676 || ||||||||||||||||| || ||||||||||||||| Sbjct: 24703037 acaggaactactccagcaccaagggccttgcctagaatc 24703075 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Plus Query: 497 ctttcaacaagaccttcatctttgaccactttcagtgatgcgattgccacagcacttgcc 556 |||||||| |||||||||||| | || |||||||||||||| | |||||||||||||||| Sbjct: 24702686 ctttcaacgagaccttcatctgtaactactttcagtgatgcaactgccacagcacttgcc 24702745 Query: 557 aatgggtttccaccaaatgtact 579 |||||||| |||||||||||||| Sbjct: 24702746 aatgggttcccaccaaatgtact 24702768 Score = 97.6 bits (49), Expect = 5e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 170 gattctggtttcttgatctgcttctgcaactgcggcaagtcatgctcaagcacatcgcta 229 ||||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||| Sbjct: 24698462 gattctgtcttcttgatctgcttctgcagctgtggcaggtcatgctcaagcacatcgctg 24698521 Query: 230 agtgcctttgatgcctctgcgagctcctcgggactga 266 | ||||| ||||| ||||| |||||||| ||||||| Sbjct: 24698522 aacgccttcgatgcttctgcaagctcctcaggactga 24698558 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 613 atccttatcagcaagaactgcact 636 |||||||||| ||||||||||||| Sbjct: 7726480 atccttatcaacaagaactgcact 7726503
>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136470 Score = 147 bits (74), Expect = 6e-32 Identities = 179/214 (83%) Strand = Plus / Plus Query: 275 ggaggggctaatcggattatggtgtcatgcgtgggctttgctagaatgcccctctccttt 334 ||||| ||||||| ||||||||||||||| ||||||||||| |||| ||| |||||||| Sbjct: 133635 ggaggcgctaatctgattatggtgtcatgtgtgggctttgccagaacgcctctctccttc 133694 Query: 335 agcttgatgcaaatatcatatgcagaagcagggtatagagctttgctgcttaggtctaca 394 ||||||||||| || || || |||||||||||| ||| ||||| | ||||||| || || Sbjct: 133695 agcttgatgcagatgtcgtaagcagaagcaggggataaagcttcgttgcttagatccact 133754 Query: 395 gcattaagcaaacctctcccgcgtatttccctgataatatgaggaaatttctgctgaacc 454 |||||||||||||| ||||| |||| |||||| || || || || ||| |||| |||||| Sbjct: 133755 gcattaagcaaacccctcccacgtacttcccttatgatttgcgggaatctctgttgaacc 133814 Query: 455 tcttgtaactggtccctgaactcctgacctaact 488 | |||| ||| || |||||||| || ||||||| Sbjct: 133815 ttctgtagctgatctctgaactcttgtcctaact 133848 Score = 141 bits (71), Expect = 4e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 578 cttccatgttctcctggcttgatacacagcatgatatccttatcagcaagaactgcactg 637 ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 134264 cttccatgttctcctggtttgatacacagcataatatccttatctgcaagaaccgcactg 134323 Query: 638 accggaactactccagcacctagtgccttgcctagaatc 676 || ||||||||||||||||| || ||||||||||||||| Sbjct: 134324 acaggaactactccagcaccaagggccttgcctagaatc 134362 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Plus Query: 497 ctttcaacaagaccttcatctttgaccactttcagtgatgcgattgccacagcacttgcc 556 |||||||| |||||||||||| | || |||||||||||||| | |||||||||||||||| Sbjct: 133973 ctttcaacgagaccttcatctgtaactactttcagtgatgcaactgccacagcacttgcc 134032 Query: 557 aatgggtttccaccaaatgtact 579 |||||||| |||||||||||||| Sbjct: 134033 aatgggttcccaccaaatgtact 134055 Score = 97.6 bits (49), Expect = 5e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 170 gattctggtttcttgatctgcttctgcaactgcggcaagtcatgctcaagcacatcgcta 229 ||||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||| Sbjct: 129749 gattctgtcttcttgatctgcttctgcagctgtggcaggtcatgctcaagcacatcgctg 129808 Query: 230 agtgcctttgatgcctctgcgagctcctcgggactga 266 | ||||| ||||| ||||| |||||||| ||||||| Sbjct: 129809 aacgccttcgatgcttctgcaagctcctcaggactga 129845
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 147 bits (74), Expect = 6e-32 Identities = 179/214 (83%) Strand = Plus / Plus Query: 275 ggaggggctaatcggattatggtgtcatgcgtgggctttgctagaatgcccctctccttt 334 ||||| ||||||| ||||||||||||||| ||||||||||| |||| ||| |||||||| Sbjct: 24619178 ggaggcgctaatctgattatggtgtcatgtgtgggctttgccagaacgcctctctccttc 24619237 Query: 335 agcttgatgcaaatatcatatgcagaagcagggtatagagctttgctgcttaggtctaca 394 ||||||||||| || || || |||||||||||| ||| ||||| | ||||||| || || Sbjct: 24619238 agcttgatgcagatgtcgtaagcagaagcaggggataaagcttcgttgcttagatccact 24619297 Query: 395 gcattaagcaaacctctcccgcgtatttccctgataatatgaggaaatttctgctgaacc 454 |||||||||||||| ||||| |||| |||||| || || || || ||| |||| |||||| Sbjct: 24619298 gcattaagcaaacccctcccacgtacttcccttatgatttgcgggaatctctgttgaacc 24619357 Query: 455 tcttgtaactggtccctgaactcctgacctaact 488 | |||| ||| || |||||||| || ||||||| Sbjct: 24619358 ttctgtagctgatctctgaactcttgtcctaact 24619391 Score = 141 bits (71), Expect = 4e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 578 cttccatgttctcctggcttgatacacagcatgatatccttatcagcaagaactgcactg 637 ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 24619807 cttccatgttctcctggtttgatacacagcataatatccttatctgcaagaaccgcactg 24619866 Query: 638 accggaactactccagcacctagtgccttgcctagaatc 676 || ||||||||||||||||| || ||||||||||||||| Sbjct: 24619867 acaggaactactccagcaccaagggccttgcctagaatc 24619905 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Plus Query: 497 ctttcaacaagaccttcatctttgaccactttcagtgatgcgattgccacagcacttgcc 556 |||||||| |||||||||||| | || |||||||||||||| | |||||||||||||||| Sbjct: 24619516 ctttcaacgagaccttcatctgtaactactttcagtgatgcaactgccacagcacttgcc 24619575 Query: 557 aatgggtttccaccaaatgtact 579 |||||||| |||||||||||||| Sbjct: 24619576 aatgggttcccaccaaatgtact 24619598 Score = 97.6 bits (49), Expect = 5e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 170 gattctggtttcttgatctgcttctgcaactgcggcaagtcatgctcaagcacatcgcta 229 ||||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||| Sbjct: 24615292 gattctgtcttcttgatctgcttctgcagctgtggcaggtcatgctcaagcacatcgctg 24615351 Query: 230 agtgcctttgatgcctctgcgagctcctcgggactga 266 | ||||| ||||| ||||| |||||||| ||||||| Sbjct: 24615352 aacgccttcgatgcttctgcaagctcctcaggactga 24615388 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 613 atccttatcagcaagaactgcact 636 |||||||||| ||||||||||||| Sbjct: 7724315 atccttatcaacaagaactgcact 7724338
>emb|AM228955.1| Pinus sylvestris mRNA for putative ornithine aminotransferase (dOAT gene) Length = 1967 Score = 81.8 bits (41), Expect = 3e-12 Identities = 113/137 (82%) Strand = Plus / Minus Query: 542 gccacagcacttgccaatgggtttccaccaaatgtacttccatgttctcctggcttgata 601 ||||||||||| |||| ||||||||| ||||| || ||||||||||| || ||||| | Sbjct: 1312 gccacagcactagccagtgggtttcctccaaaagtgcttccatgttccccgggcttaaag 1253 Query: 602 cacagcatgatatccttatcagcaagaactgcactgaccggaactactccagcacctagt 661 || ||||| |||||||| |||||||| || || ||||| |||| ||||| |||||| | Sbjct: 1252 caaagcattatatccttgtcagcaagcacagcgctgactggaagcactcccccacctaat 1193 Query: 662 gccttgcctagaatcac 678 ||||| ||||| ||||| Sbjct: 1192 gccttccctaggatcac 1176
>emb|AJ278819.1|MTR278819 Medicago truncatula mRNA for delta ornithine aminotransferase (oat gene) Length = 1696 Score = 56.0 bits (28), Expect = 2e-04 Identities = 103/128 (80%) Strand = Plus / Minus Query: 515 tctttgaccactttcagtgatgcgattgccacagcacttgccaatgggtttccaccaaat 574 ||||||| ||||| ||||| || || || || ||||| |||||||| ||||||||||| Sbjct: 1102 tctttgatcacttcaagtgaggcaatggcaactgcactggccaatggatttccaccaaaa 1043 Query: 575 gtacttccatgttctcctggcttgatacacagcatgatatccttatcagcaagaactgca 634 ||||||||||| | ||| || || ||||| ||||| | || || || ||||||||||| Sbjct: 1042 gtacttccatgctgtccaggttttatacaaagcatcacttctttgtctgcaagaactgcg 983 Query: 635 ctgaccgg 642 || ||||| Sbjct: 982 ctaaccgg 975
>gb|AF177590.1|AF177590 Vitis vinifera ornithine aminotransferase mRNA, complete cds Length = 1783 Score = 52.0 bits (26), Expect = 0.003 Identities = 77/94 (81%) Strand = Plus / Minus Query: 548 gcacttgccaatgggtttccaccaaatgtacttccatgttctcctggcttgatacacagc 607 ||||| ||||| || ||| | ||||||||||||||||| |||||||||| ||| | ||| Sbjct: 1057 gcactcgccaaaggatttactccaaatgtacttccatgctctcctggctgaatagagagc 998 Query: 608 atgatatccttatcagcaagaactgcactgaccg 641 || | ||| || || ||||| |||||||| |||| Sbjct: 997 attacatctttgtctgcaagcactgcactaaccg 964
>gb|DQ224372.1| Glycine max ornithine aminotransferase mRNA, complete cds Length = 1766 Score = 46.1 bits (23), Expect = 0.16 Identities = 86/107 (80%) Strand = Plus / Minus Query: 530 agtgatgcgattgccacagcacttgccaatgggtttccaccaaatgtacttccatgttct 589 ||||| || ||||| || ||||| |||| ||| |||||||| || ||||||||||| | | Sbjct: 1076 agtgaggcaattgcaactgcactggccagtggatttccaccgaaggtacttccatgctgt 1017 Query: 590 cctggcttgatacacagcatgatatccttatcagcaagaactgcact 636 || || | ||||| ||||| | ||| || || |||||||||||||| Sbjct: 1016 ccaggttgtatacaaagcatcacatctttgtctgcaagaactgcact 970
>emb|AL157877.11| Human DNA sequence from clone RP11-2P5 on chromosome 13 Contains the 5' end of a novel gene, the gene for suppressor of G2 allele of SKP1, S. cerevisiae, the 5' end of a gene similar to TPTE and PTEN homologous inositol lipid phosphatase (TPIP) , a pseudogene similar to part of regulator of G-protein signalling 17 (RGS17), the WBP4 gene for WW domain binding protein 4 (formin binding protein 21) and 4 CpG islands, complete sequence Length = 198567 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 66 aaatccatgttctgttattcca 87 |||||||||||||||||||||| Sbjct: 52696 aaatccatgttctgttattcca 52675
>ref|NM_123987.2| Arabidopsis thaliana delta-OAT; ornithine-oxo-acid transaminase AT5G46180 (delta-OAT) mRNA, complete cds Length = 1719 Score = 42.1 bits (21), Expect = 2.5 Identities = 76/93 (81%), Gaps = 1/93 (1%) Strand = Plus / Minus Query: 617 ttatcagcaagaactgcactgaccggaactactccagcacctagtgccttgcctagaatc 676 ||||||||||| |||||||| || |||| |||||| |||||| ||| || || || ||| Sbjct: 929 ttatcagcaagcactgcacttactggaattactcctccacctaatgctttcccaagtatc 870 Query: 677 accatatcaaggtcgtacatcttcccaatcaca 709 ||||| ||| || || | |||||||||||||| Sbjct: 869 accatgtca-ggacgaatttcttcccaatcaca 838
>ref|XM_739667.1| Plasmodium chabaudi chabaudi ornithine aminotransferase, (PC001183.02.0) partial mRNA Length = 1245 Score = 42.1 bits (21), Expect = 2.5 Identities = 39/45 (86%) Strand = Plus / Minus Query: 557 aatgggtttccaccaaatgtacttccatgttctcctggcttgata 601 |||||||| |||||| ||||| |||||||||||||| |||||| Sbjct: 893 aatgggttaccaccatatgtagaaccatgttctcctggtttgata 849
>gb|BT023421.1| Arabidopsis thaliana At5g46180 gene, complete cds Length = 1532 Score = 42.1 bits (21), Expect = 2.5 Identities = 76/93 (81%), Gaps = 1/93 (1%) Strand = Plus / Minus Query: 617 ttatcagcaagaactgcactgaccggaactactccagcacctagtgccttgcctagaatc 676 ||||||||||| |||||||| || |||| |||||| |||||| ||| || || || ||| Sbjct: 942 ttatcagcaagcactgcacttactggaattactcctccacctaatgctttcccaagtatc 883 Query: 677 accatatcaaggtcgtacatcttcccaatcaca 709 ||||| ||| || || | |||||||||||||| Sbjct: 882 accatgtca-ggacgaatttcttcccaatcaca 851
>gb|AY505014.1| Thermomicrobia bacterium PRI-1686 alpha-L-rhamnosidase B (rhmB) gene, complete cds Length = 2865 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 cccatctctggtcggatgaac 114 ||||||||||||||||||||| Sbjct: 2219 cccatctctggtcggatgaac 2239
>gb|AC106720.8| Homo sapiens 3 BAC RP11-26M20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 92354 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 504 caagaccttcatctttgaccacttt 528 ||||| ||||||||||||||||||| Sbjct: 40245 caagagcttcatctttgaccacttt 40221
>emb|BX005108.8| Zebrafish DNA sequence from clone CH211-268B13 in linkage group 9, complete sequence Length = 171835 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 ctggtttcttgatctgcttct 194 ||||||||||||||||||||| Sbjct: 87483 ctggtttcttgatctgcttct 87463
>gb|AC163331.8| Mus musculus chromosome 5, clone RP23-50G20, complete sequence Length = 257982 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 366 ggtatagagctttgctgcttaggt 389 |||||||||||||||| ||||||| Sbjct: 210830 ggtatagagctttgctacttaggt 210807
>gb|AC149233.1| Pan troglodytes chromosome X clone RP43-034P07 map human ortholog q28, complete sequence Length = 169963 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 gtatttccctgataatatga 436 |||||||||||||||||||| Sbjct: 97253 gtatttccctgataatatga 97234
>gb|AC121279.7| Mus musculus chromosome 3, clone RP23-4F17, complete sequence Length = 207763 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 accttcatctttgaccactt 527 |||||||||||||||||||| Sbjct: 149949 accttcatctttgaccactt 149968
>ref|XM_801885.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508669.10) partial mRNA Length = 3072 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 ttccaccaaatgtacttcca 583 |||||||||||||||||||| Sbjct: 1051 ttccaccaaatgtacttcca 1032
>ref|XM_804108.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508809.40) partial mRNA Length = 3057 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 ttccaccaaatgtacttcca 583 |||||||||||||||||||| Sbjct: 1033 ttccaccaaatgtacttcca 1014
>gb|AC164631.5| Mus musculus 6 BAC RP23-359M3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 237469 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 agtgcctttgatgcctctgc 249 |||||||||||||||||||| Sbjct: 139214 agtgcctttgatgcctctgc 139195
>gb|AF262215.1| Oryza sativa guanine nucleotide-exchange protein GEP2 (GEP2) mRNA, partial cds Length = 5678 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 613 atccttatcagcaagaactgcact 636 |||||||||| ||||||||||||| Sbjct: 4057 atccttatcaacaagaactgcact 4034
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 atgcccctctcctttagctt 339 |||||||||||||||||||| Sbjct: 28519842 atgcccctctcctttagctt 28519861
>gb|AC010145.10| Homo sapiens BAC clone RP11-355H10 from 2, complete sequence Length = 198960 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gaatgcccctctcctttagc 337 |||||||||||||||||||| Sbjct: 14930 gaatgcccctctcctttagc 14949
>gb|AC011444.5|AC011444 Homo sapiens chromosome 19 clone CTC-232P5, complete sequence Length = 133925 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 ctggtccctgaactcctgac 482 |||||||||||||||||||| Sbjct: 88422 ctggtccctgaactcctgac 88441
>dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0037D09 Length = 140470 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 atgcccctctcctttagctt 339 |||||||||||||||||||| Sbjct: 85594 atgcccctctcctttagctt 85613
>dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0618H09 Length = 142306 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 atgcccctctcctttagctt 339 |||||||||||||||||||| Sbjct: 77383 atgcccctctcctttagctt 77402
>dbj|BS000126.1| Pan troglodytes chromosome 22 clone:PTB-128A24, map 22, complete sequences Length = 207747 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tgaaaaatccatgttctgtt 81 |||||||||||||||||||| Sbjct: 130297 tgaaaaatccatgttctgtt 130278
>gb|AC138398.9| Mus musculus chromosome 5, clone RP23-309P20, complete sequence Length = 190846 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 ggtatagagctttgctgcttaggt 389 |||||||||||||||| ||||||| Sbjct: 53409 ggtatagagctttgctacttaggt 53432
>dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, section 74/105 Length = 340000 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tgaaaaatccatgttctgtt 81 |||||||||||||||||||| Sbjct: 293458 tgaaaaatccatgttctgtt 293439
>gb|AC002368.1|AC002368 Homo sapiens Xq28 BAC PAC and cosmid clones containing FMR2 gene exons 1,2, and 3, complete sequence Length = 324816 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 gtatttccctgataatatga 436 |||||||||||||||||||| Sbjct: 56214 gtatttccctgataatatga 56195
>gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0078P24, from chromosome 3, complete sequence Length = 146930 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 613 atccttatcagcaagaactgcact 636 |||||||||| ||||||||||||| Sbjct: 126314 atccttatcaacaagaactgcact 126291
>gb|AF008243.1|AF008243 Homo sapiens cosmid clone C102H1064 from 21q22.2, complete sequence Length = 34037 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 tgaaaaatccatgttctgtt 81 |||||||||||||||||||| Sbjct: 4781 tgaaaaatccatgttctgtt 4800
>dbj|AP000160.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 12/16, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tgaaaaatccatgttctgtt 81 |||||||||||||||||||| Sbjct: 40875 tgaaaaatccatgttctgtt 40856
>dbj|AP000018.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 9/13 Length = 100000 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tgaaaaatccatgttctgtt 81 |||||||||||||||||||| Sbjct: 75271 tgaaaaatccatgttctgtt 75252
>dbj|AP001417.2| Homo sapiens genomic DNA, chromosome 21q22.2, LB7T-ERG region, clone:D40 Length = 89723 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tgaaaaatccatgttctgtt 81 |||||||||||||||||||| Sbjct: 24023 tgaaaaatccatgttctgtt 24004 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,419,906 Number of Sequences: 3902068 Number of extensions: 6419906 Number of successful extensions: 232231 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 231912 Number of HSP's gapped (non-prelim): 317 length of query: 713 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 690 effective length of database: 17,143,297,704 effective search space: 11828875415760 effective search space used: 11828875415760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
