ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18a18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC159205.2| Mus musculus BAC clone RP23-233O17 from chromosome 13, complete sequence Length = 202409 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 175 aaagacaagggagggagggagg 196 |||||||||||||||||||||| Sbjct: 113661 aaagacaagggagggagggagg 113682
>emb|AL391280.15| Human DNA sequence from clone RP13-128O4 on chromosome X Contains the 3' end of the gene for a novel protein similar to zizimin1 (FLJ32122), the IL13RA1 gene for interleukin 13 receptor, alpha 1 (NR4, IL-13RA, IL-13Ra), a novel pseudogene and a CpG island, complete sequence Length = 153026 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 177 agacaagggagggagggaggtg 198 |||||||||||||||||||||| Sbjct: 92813 agacaagggagggagggaggtg 92792
>gb|AC153728.1| Mus musculus BAC RP23-83N17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226417 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 aagacaagggagggagggagg 196 ||||||||||||||||||||| Sbjct: 184232 aagacaagggagggagggagg 184212
>gb|AC163689.3| Mus musculus BAC clone CH36-200G6 from chromosome 13, complete sequence Length = 188084 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 aaaagacaagggagggaggga 194 ||||||||||||||||||||| Sbjct: 8970 aaaagacaagggagggaggga 8990
>ref|XM_631925.1| Dictyostelium discoideum hypothetical protein (DDB0219267), partial mRNA Length = 6861 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 acaacaacaaataatagtaaa 176 ||||||||||||||||||||| Sbjct: 1624 acaacaacaaataatagtaaa 1644
>gb|AC124170.3| Mus musculus BAC clone RP23-155H5 from 8, complete sequence Length = 235023 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 aagacaagggagggagggagg 196 ||||||||||||||||||||| Sbjct: 209602 aagacaagggagggagggagg 209622
>gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, complete sequence Length = 247394 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 aagacaagggagggagggagg 196 ||||||||||||||||||||| Sbjct: 135159 aagacaagggagggagggagg 135139
>emb|AL080277.12|HSJ308E17 Human DNA sequence from clone RP1-308E17 on chromosome 6q22.1-22.3, complete sequence Length = 145167 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 214 gatagcaatagatccaggttgtggt 238 ||||||||||| ||||||||||||| Sbjct: 32384 gatagcaataggtccaggttgtggt 32408
>gb|AC009374.7| Drosophila melanogaster 3L BAC RP98-4J11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 164719 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 157 caacaacaaataatagtaaaagaca 181 |||||||||||||||| |||||||| Sbjct: 93687 caacaacaaataatagaaaaagaca 93663
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 gacaagggagggagggaggtg 198 ||||||||||||||||||||| Sbjct: 364391 gacaagggagggagggaggtg 364411
>gb|AC154550.2| Mus musculus BAC clone RP23-444H18 from chromosome 13, complete sequence Length = 190647 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 aaaagacaagggagggaggga 194 ||||||||||||||||||||| Sbjct: 103329 aaaagacaagggagggaggga 103309
>gb|AE003524.5| Drosophila melanogaster chromosome 3L, section 61 of 83 of the complete sequence Length = 425677 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 157 caacaacaaataatagtaaaagaca 181 |||||||||||||||| |||||||| Sbjct: 175496 caacaacaaataatagaaaaagaca 175520
>gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complete sequence Length = 230313 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 aagacaagggagggagggagg 196 ||||||||||||||||||||| Sbjct: 102647 aagacaagggagggagggagg 102667
>gb|AC123613.16| Mus musculus chromosome 1, clone RP23-434L2, complete sequence Length = 204785 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 agacaagggagggagggagg 196 |||||||||||||||||||| Sbjct: 49813 agacaagggagggagggagg 49832
>gb|AY439568.1| Armigeres subalbatus ASAP ID: 44033 unknown mRNA sequence Length = 716 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 gcaataacagcaagaacagcaaca 57 |||||| ||||||||||||||||| Sbjct: 624 gcaataccagcaagaacagcaaca 647
>gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0076K20, complete sequence Length = 127338 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aaaagacaagggagggaggg 193 |||||||||||||||||||| Sbjct: 73329 aaaagacaagggagggaggg 73310
>gb|AC165441.3| Mus musculus BAC clone RP24-548F24 from chromosome 8, complete sequence Length = 235813 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 acactgcttactgatttgct 154 |||||||||||||||||||| Sbjct: 203476 acactgcttactgatttgct 203457
>gb|AF045638.1| Caenorhabditis elegans cosmid C35B1, complete sequence Length = 33772 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ctccgtttgccatcgatagc 219 |||||||||||||||||||| Sbjct: 31506 ctccgtttgccatcgatagc 31487
>gb|AC113983.13| Mus musculus chromosome 5, clone RP24-95M11, complete sequence Length = 198590 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 aagacaagggagggagggag 195 |||||||||||||||||||| Sbjct: 61056 aagacaagggagggagggag 61075
>ref|XM_709902.1| Candida albicans SC5314 putative peroxisomal biogenesis AAA ATPase Pex6 (CaO19.11057), mRNA Length = 3474 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 gcaataacagcaagaacagcaaca 57 |||| ||||||||||||||||||| Sbjct: 3369 gcaacaacagcaagaacagcaaca 3392
>ref|XM_709839.1| Candida albicans SC5314 putative peroxisomal biogenesis AAA ATPase Pex6 (CaO19.3573), mRNA Length = 3474 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 gcaataacagcaagaacagcaaca 57 |||| ||||||||||||||||||| Sbjct: 3369 gcaacaacagcaagaacagcaaca 3392
>gb|AC163402.5| Mus musculus chromosome 7, clone RP23-290H21, complete sequence Length = 240582 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 agacaagggagggagggagg 196 |||||||||||||||||||| Sbjct: 86377 agacaagggagggagggagg 86358
>gb|AC157944.2| Mus musculus BAC clone RP23-456N8 from chromosome 15, complete sequence Length = 179092 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 ccacaagcacactgcttactgatt 150 ||||| |||||||||||||||||| Sbjct: 107927 ccacatgcacactgcttactgatt 107904
>gb|AC163105.5| Mus musculus BAC clone RP23-259A11 from chromosome 14, complete sequence Length = 227806 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gacaagggagggagggaggt 197 |||||||||||||||||||| Sbjct: 205589 gacaagggagggagggaggt 205608
>emb|AL360002.5| Human DNA sequence from clone RP11-192B4 on chromosome 1, complete sequence Length = 61404 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 aacagcaagaacagcaacac 58 |||||||||||||||||||| Sbjct: 39094 aacagcaagaacagcaacac 39113
>emb|AL355821.9| Human DNA sequence from clone RP11-51A2 on chromosome 13 Contains a ribosomal protein L7 (RPL7) pseudogene, complete sequence Length = 96109 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 aaagacaagggagggaggga 194 |||||||||||||||||||| Sbjct: 21029 aaagacaagggagggaggga 21010
>emb|AL159174.10| Human DNA sequence from clone RP11-16C18 on chromosome 6 Contains part of the ANKRD6 gene for ankyrin repeat domain 6, a novel gene and the 3' end of a novel gene, complete sequence Length = 93280 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 ctgggtggacattccagtcc 116 |||||||||||||||||||| Sbjct: 35318 ctgggtggacattccagtcc 35299
>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16 Length = 349746 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 acatcgcctcctgcacccgg 289 |||||||||||||||||||| Sbjct: 110302 acatcgcctcctgcacccgg 110321
>gb|AC154634.2| Mus musculus BAC clone RP23-298D14 from chromosome 14, complete sequence Length = 218356 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 taaaagacaagggagggagggagg 196 ||||||| |||||||||||||||| Sbjct: 126110 taaaagaaaagggagggagggagg 126133
>emb|BX664715.25| Zebrafish DNA sequence from clone DKEY-83M2 in linkage group 6, complete sequence Length = 231173 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 acaacaacaaataatagtaa 175 |||||||||||||||||||| Sbjct: 153884 acaacaacaaataatagtaa 153865
>gb|AC093310.3| Homo sapiens chromosome 5 clone RP11-9C14, complete sequence Length = 65874 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 aaaagacaagggagggagggaggt 197 |||||| ||||||||||||||||| Sbjct: 48525 aaaagaaaagggagggagggaggt 48502
>gb|AC099307.1| Drosophila melanogaster, chromosome 2R, region 57C-57D, BAC clone BACR13H23, complete sequence Length = 179139 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 gcaataacagcaagaacagcaaca 57 |||| ||||||||||||||||||| Sbjct: 15978 gcaagaacagcaagaacagcaaca 15955
>gb|AC007175.1|AC007175 Drosophila melanogaster, chromosome 2R, region 57D3-57E2, BAC clones DS01261 and BACR48K03, complete sequence Length = 188633 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 gcaataacagcaagaacagcaaca 57 |||| ||||||||||||||||||| Sbjct: 142499 gcaagaacagcaagaacagcaaca 142476
>gb|AC127321.4| Mus musculus BAC clone RP23-231A8 from chromosome 8, complete sequence Length = 220673 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 acactgcttactgatttgct 154 |||||||||||||||||||| Sbjct: 68087 acactgcttactgatttgct 68068
>emb|BX890565.9| Zebrafish DNA sequence from clone CH211-250G22, complete sequence Length = 120394 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 acaacaacaaataatagtaa 175 |||||||||||||||||||| Sbjct: 49034 acaacaacaaataatagtaa 49015
>ref|NM_068081.3| Caenorhabditis elegans C35B1.7 (C35B1.7) mRNA, complete cds Length = 442 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ctccgtttgccatcgatagc 219 |||||||||||||||||||| Sbjct: 110 ctccgtttgccatcgatagc 91
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 tccagtccaaacccaactcc 128 |||||||||||||||||||| Sbjct: 3416707 tccagtccaaacccaactcc 3416726
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 aaaagacaagggagggaggg 193 |||||||||||||||||||| Sbjct: 2653469 aaaagacaagggagggaggg 2653488
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tccagtccaaacccaactcc 128 |||||||||||||||||||| Sbjct: 9715414 tccagtccaaacccaactcc 9715395
>dbj|AP005875.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0033K18 Length = 138487 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tccagtccaaacccaactcc 128 |||||||||||||||||||| Sbjct: 24485 tccagtccaaacccaactcc 24466
>dbj|BS000039.1| Pan troglodytes chromosome 22 clone:CH251-530H12, map 22, complete sequences Length = 45920 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 aacaacaaataatagtaaaa 177 |||||||||||||||||||| Sbjct: 27116 aacaacaaataatagtaaaa 27097
>gb|AE003454.3| Drosophila melanogaster chromosome 2R, section 62 of 73 of the complete sequence Length = 313634 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 gcaataacagcaagaacagcaaca 57 |||| ||||||||||||||||||| Sbjct: 5813 gcaagaacagcaagaacagcaaca 5790
>dbj|AP001671.1| Homo sapiens genomic DNA, chromosome 21q, section 15/105 Length = 340000 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 aacaacaaataatagtaaaa 177 |||||||||||||||||||| Sbjct: 179861 aacaacaaataatagtaaaa 179842
>gb|AC113953.6| Mus musculus chromosome 18, clone RP24-215C1, complete sequence Length = 201174 Score = 40.1 bits (20), Expect = 4.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 169 atagtaaaagacaagggagggagggagg 196 ||||||||||| |||||||||||||||| Sbjct: 99800 atagtaaaaga-aagggagggagggagg 99826
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 aaaagacaagggagggaggg 193 |||||||||||||||||||| Sbjct: 2662500 aaaagacaagggagggaggg 2662519
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 tccagtccaaacccaactcc 128 |||||||||||||||||||| Sbjct: 3416652 tccagtccaaacccaactcc 3416671
>gb|AC156797.2| Mus musculus BAC clone RP24-88A16 from chromosome 14, complete sequence Length = 166341 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gacaagggagggagggaggt 197 |||||||||||||||||||| Sbjct: 140439 gacaagggagggagggaggt 140420
>emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 116371 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tccagtccaaacccaactcc 128 |||||||||||||||||||| Sbjct: 115212 tccagtccaaacccaactcc 115193
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137936 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 tccagtccaaacccaactcc 128 |||||||||||||||||||| Sbjct: 95760 tccagtccaaacccaactcc 95779
>emb|AL671911.12| Mouse DNA sequence from clone RP23-250F8 on chromosome X, complete sequence Length = 213401 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 agacaagggagggagggagg 196 |||||||||||||||||||| Sbjct: 190957 agacaagggagggagggagg 190976
>gb|AC121109.5| Mus musculus chromosome 7, clone RP24-445I8, complete sequence Length = 167819 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 agacaagggagggagggagg 196 |||||||||||||||||||| Sbjct: 34329 agacaagggagggagggagg 34348
>dbj|AP000745.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B546A20, LL56-APP region, complete sequence Length = 55871 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 aacaacaaataatagtaaaa 177 |||||||||||||||||||| Sbjct: 42573 aacaacaaataatagtaaaa 42554 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,203,145 Number of Sequences: 3902068 Number of extensions: 4203145 Number of successful extensions: 329477 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 328877 Number of HSP's gapped (non-prelim): 602 length of query: 353 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 331 effective length of database: 17,147,199,772 effective search space: 5675723124532 effective search space used: 5675723124532 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
