ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY150676.1| Hordeum vulgare subsp. vulgare bZIP transcription... 351 9e-94
2dbj|AB193553.1| Triticum aestivum WABI5 mRNA for bZIP transcript... 178 8e-42
3gb|AC006474.3| Homo sapiens PAC clone RP4-669I17 from 7, complet... 40 4.5
4emb|CR759874.20| Zebrafish DNA sequence from clone CH211-214H24 ... 40 4.5
5emb|CR749631.1| Homo sapiens mRNA; cDNA DKFZp686G0638 (from clon... 40 4.5
6ref|NM_019885.2| Homo sapiens cytochrome P450, family 26, subfam... 40 4.5
7emb|BX510931.8| Zebrafish DNA sequence from clone CH211-132M19 i... 40 4.5
8emb|AL805896.12| Mouse DNA sequence from clone RP23-402I8 on chr... 40 4.5
9gb|AC151581.2| Pan troglodytes BAC clone RP43-166C19 from chromo... 40 4.5
10gb|AC007002.3| Homo sapiens BAC clone RP11-493L16 from 2, comple... 40 4.5
11gb|AF252297.1|AF252297 Homo sapiens cytochrome P450 retinoid met... 40 4.5
12dbj|AP006383.1| Lotus japonicus genomic DNA, chromosome 6, clone... 40 4.5 
>gb|AY150676.1| Hordeum vulgare subsp. vulgare bZIP transcription factor ABI5 (ABI5)
            mRNA, complete cds
          Length = 1300

 Score =  351 bits (177), Expect = 9e-94
 Identities = 184/185 (99%), Gaps = 1/185 (0%)
 Strand = Plus / Minus

                                                                        
Query: 158  tctgaaggacaactgccaaattacagcggttcttacttacggctcccctcctcgactaca 217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 tctgaaggacaactgccaaattacagcggttcttacttacggctcccctcctcgactaca 1241

                                                                        
Query: 218  cactagcctacaggtcagcggtctctgaagcagcacgagaaaggaaactagaaggtcaat 277
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 cactagcctacaggtcagcggtctctgaagcagcacgagaaaggaaactagaaggtcaat 1181

                                                                        
Query: 278  caagcacaggtctggtccatcatcggtttacaatagagcaaaattatatgtacaaagcag 337
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1180 caagcacaggtctggtccatcatcggtttacaatagagc-aaattatatgtacaaagcag 1122

                 
Query: 338  gtaga 342
            |||||
Sbjct: 1121 gtaga 1117
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>dbj|AB193553.1| Triticum aestivum WABI5 mRNA for bZIP transcription factor, complete
            cds
          Length = 1228

 Score =  178 bits (90), Expect = 8e-42
 Identities = 111/117 (94%), Gaps = 2/117 (1%)
 Strand = Plus / Minus

                                                                        
Query: 223  gcctacaggtcagcggtctctgaagcagcacgagaaaggaaactagaaggtcaatcaagc 282
            ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct: 1228 gcctacaggtcagcggtctctgaagcagcacgagaaaggaagctagcaggtcaaccaagc 1169

                                                                     
Query: 283  acaggtctggtccatcatcggtttacaatagagcaaaattatatgtacaaagcaggt 339
            |||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||
Sbjct: 1168 acaggtctggtccatcatcggtttacaatagagcgaa--tatatgtacaaagcaggt 1114
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>gb|AC006474.3| Homo sapiens PAC clone RP4-669I17 from 7, complete sequence
          Length = 69718

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 157   ttctgaaggacaactgccaaatta 180
             ||||||||||||| ||||||||||
Sbjct: 29080 ttctgaaggacaaatgccaaatta 29103
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>emb|CR759874.20| Zebrafish DNA sequence from clone CH211-214H24 in linkage group 20,
              complete sequence
          Length = 223471

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    gactacacactagcctacag 230
              ||||||||||||||||||||
Sbjct: 169368 gactacacactagcctacag 169349
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>emb|CR749631.1| Homo sapiens mRNA; cDNA DKFZp686G0638 (from clone DKFZp686G0638)
          Length = 4087

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  gtttacaatagagcaaaatt 322
            ||||||||||||||||||||
Sbjct: 3951 gtttacaatagagcaaaatt 3932
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>ref|NM_019885.2| Homo sapiens cytochrome P450, family 26, subfamily B, polypeptide 1
            (CYP26B1), mRNA
          Length = 4534

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  gtttacaatagagcaaaatt 322
            ||||||||||||||||||||
Sbjct: 4292 gtttacaatagagcaaaatt 4273
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>emb|BX510931.8| Zebrafish DNA sequence from clone CH211-132M19 in linkage group 21,
             complete sequence
          Length = 181237

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   ggacaactgccaaattacag 183
             ||||||||||||||||||||
Sbjct: 28480 ggacaactgccaaattacag 28499
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>emb|AL805896.12| Mouse DNA sequence from clone RP23-402I8 on chromosome 4, complete
              sequence
          Length = 210141

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 58     tcttaaatctctaataaggacaaa 81
              ||||| ||||||||||||||||||
Sbjct: 129780 tcttagatctctaataaggacaaa 129803
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>gb|AC151581.2| Pan troglodytes BAC clone RP43-166C19 from chromosome 7, complete
            sequence
          Length = 180623

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 254  gagaaaggaaactagaaggt 273
            ||||||||||||||||||||
Sbjct: 8370 gagaaaggaaactagaaggt 8351
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>gb|AC007002.3| Homo sapiens BAC clone RP11-493L16 from 2, complete sequence
          Length = 140331

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    gtttacaatagagcaaaatt 322
              ||||||||||||||||||||
Sbjct: 102900 gtttacaatagagcaaaatt 102919
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>gb|AF252297.1|AF252297 Homo sapiens cytochrome P450 retinoid metabolizing protein P450RAI-2
            mRNA, complete cds
          Length = 4445

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  gtttacaatagagcaaaatt 322
            ||||||||||||||||||||
Sbjct: 4292 gtttacaatagagcaaaatt 4273
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>dbj|AP006383.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT05I20, TM0245,
             complete sequence
          Length = 73179

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    ctcaaatccgactttatctt 61
             ||||||||||||||||||||
Sbjct: 31828 ctcaaatccgactttatctt 31809


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,279,812
Number of Sequences: 3902068
Number of extensions: 2279812
Number of successful extensions: 36564
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36544
Number of HSP's gapped (non-prelim): 18
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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