Clone Information

BLAST Search Result

Clone Name	rbasd17g23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	IM30_ORYSA (Q8S0J7) Probable membrane-associated 30 kDa protein,...	192	5e-49
2	IM30_PEA (Q03943) Membrane-associated 30 kDa protein, chloroplas...	190	3e-48
3	IM30_ARATH (O80796) Probable membrane-associated 30 kDa protein,...	176	6e-44
4	Y617_SYNY3 (Q55707) Hypothetical protein sll0617	79	1e-14
5	PSPA_DEIRA (Q9RUB7) Phage shock protein A homolog	44	3e-04
6	PSPA_BACSU (P54617) Phage shock protein A homolog	43	8e-04
7	NUF1_YEAST (P32380) Protein NUF1 (Spindle poly body spacer prote...	35	0.21
8	CHM2B_BOVIN (Q3SX42) Charged multivesicular body protein 2b (Chr...	32	1.0
9	CHM1B_XENTR (Q6DF27) Charged multivesicular body protein 1b (Chr...	32	1.0
10	CHM1B_XENLA (Q7SZB5) Charged multivesicular body protein 1b (Chr...	32	1.0
11	CHM1B_HUMAN (Q7LBR1) Charged multivesicular body protein 1b (Chr...	32	1.0
12	CH1B2_MOUSE (Q9CQD4) Charged multivesicular body protein 1b-2 (C...	32	1.0
13	CH1B1_MOUSE (Q99LU0) Charged multivesicular body protein 1b-1 (C...	32	1.0
14	CHM1B_BOVIN (Q5E994) Charged multivesicular body protein 1b (Chr...	32	1.4
15	KMHA_DICDI (P42527) Myosin heavy chain kinase A (EC 2.7.11.7) (M...	32	1.4
16	SNF7_NEUCR (Q871Y8) Vacuolar sorting protein snf-7 (Vacuolar pro...	32	1.4
17	CHM1B_CHICK (Q5ZKX1) Charged multivesicular body protein 1b (Chr...	32	1.8
18	UT14A_MOUSE (Q640M1) U3 small nucleolar RNA-associated protein 1...	32	1.8
19	UT14A_HUMAN (Q9BVJ6) U3 small nucleolar RNA-associated protein 1...	32	1.8
20	CHM2B_PONPY (Q5RAV2) Charged multivesicular body protein 2b (Chr...	31	2.3
21	CHM2B_MOUSE (Q8BJF9) Charged multivesicular body protein 2b (Chr...	31	2.3
22	CHM2B_HUMAN (Q9UQN3) Charged multivesicular body protein 2b (Chr...	31	2.3
23	CHM1B_BRARE (Q7ZVB1) Charged multivesicular body protein 1b (Chr...	31	3.0
24	ATG16_ASPFU (Q4WVH5) Autophagy protein 16	30	4.0
25	TAH18_CRYNE (Q5KER0) Probable NADPH reductase TAH18 (EC 1.-.-.-)	30	4.0
26	HAM1_PROMP (Q7V316) HAM1 protein homolog	30	4.0
27	MPS1_BRARE (Q8AYG3) Mitotic checkpoint serine/threonine-protein ...	30	4.0
28	FTSH_STRR6 (P59652) Cell division protein ftsH homolog (EC 3.4.2...	30	4.0
29	FTSH_STRPN (O69076) Cell division protein ftsH homolog (EC 3.4.2...	30	4.0
30	RAD50_AERPE (Q9YFZ1) DNA double-strand break repair rad50 ATPase	30	5.2
31	Y205_MYCPN (P75571) Hypothetical protein MPN205 (GT9_orf438V)	30	5.2
32	MYS2_DICDI (P08799) Myosin-2 heavy chain, non muscle (Myosin II ...	30	5.2
33	FLIP1_RAT (Q8K4T4) Filamin-A-interacting protein 1 (FILIP)	30	6.7
34	Y1126_METTH (O27198) Hypothetical UPF0348 protein MTH1126	30	6.7
35	SMC3_PONPY (Q5R4K5) Structural maintenance of chromosome 3 (Chon...	30	6.7
36	SMC3_MOUSE (Q9CW03) Structural maintenance of chromosome 3 (Chon...	30	6.7
37	SMC3_HUMAN (Q9UQE7) Structural maintenance of chromosome 3 (Chon...	30	6.7
38	CWF16_SCHPO (Q9P7C5) Cell cycle control protein cwf16	30	6.7
39	Y598_METMA (Q8PZ96) UPF0218 protein MM0598	30	6.7
40	SMC3_BOVIN (O97594) Structural maintenance of chromosome 3 (Chon...	30	6.7
41	SMC3_RAT (P97690) Structural maintenance of chromosome 3 (Chondr...	30	6.7
42	FLIP1_HUMAN (Q7Z7B0) Filamin-A-interacting protein 1 (FILIP)	30	6.7
43	PHNC_TREDE (Q73P71) Phosphonates import ATP-binding protein phnC...	29	8.8
44	Y4479_BORBR (Q7WF01) UPF0271 protein BB4479	29	8.8
45	Y4006_BORPA (Q7W3M5) UPF0271 protein BPP4006	29	8.8
46	Y150_BORPE (O30444) UPF0271 protein BP0150	29	8.8

>IM30_ORYSA (Q8S0J7) Probable membrane-associated 30 kDa protein, chloroplast|
           precursor
          Length = 317

 Score =  192 bits (489), Expect = 5e-49
 Identities = 101/122 (82%), Positives = 108/122 (88%), Gaps = 1/122 (0%)
 Frame = -1

Query: 588 LKARAQSAKTATKVSEMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFA 409
           LKARAQSAKT+TKVSEMLGNVNTSGALSAFEKMEEKVM MESQAEALGQL  DDLEGKFA
Sbjct: 196 LKARAQSAKTSTKVSEMLGNVNTSGALSAFEKMEEKVMAMESQAEALGQLATDDLEGKFA 255

Query: 408 MLETTSVDDDLAQMRKELSGSSLKGELPPGRTTTA-SKSGSPFRDTEIETELNELRKKTK 232
           +LET+SVDDDLAQM+KE+SGSS KGELPPGRT  + S +  PFRD EIE ELNELRKK  
Sbjct: 256 LLETSSVDDDLAQMKKEISGSSSKGELPPGRTAVSNSGAARPFRDIEIENELNELRKKAN 315

Query: 231 EY 226
           EY
Sbjct: 316 EY 317

to top

>IM30_PEA (Q03943) Membrane-associated 30 kDa protein, chloroplast precursor|
           (M30)
          Length = 323

 Score =  190 bits (482), Expect = 3e-48
 Identities = 99/124 (79%), Positives = 112/124 (90%), Gaps = 4/124 (3%)
 Frame = -1

Query: 588 LKARAQSAKTATKVSEMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFA 409
           LKARAQSAKTATKVSEMLGNVNTS ALSAFEKMEEKVMTMESQAEALGQL  DDLEGKFA
Sbjct: 199 LKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQLTTDDLEGKFA 258

Query: 408 MLETTSVDDDLAQMRKELSGSSLKGELPPGR----TTTASKSGSPFRDTEIETELNELRK 241
           MLET+SVDDDLA ++KEL+GSS KGELPPGR    +TT++K+G+PFRD +IE EL +LRK
Sbjct: 259 MLETSSVDDDLANLKKELAGSSKKGELPPGRSSTTSTTSTKTGNPFRDADIEIELEQLRK 318

Query: 240 KTKE 229
           ++KE
Sbjct: 319 RSKE 322

to top

>IM30_ARATH (O80796) Probable membrane-associated 30 kDa protein, chloroplast|
           precursor
          Length = 330

 Score =  176 bits (445), Expect = 6e-44
 Identities = 87/121 (71%), Positives = 105/121 (86%)
 Frame = -1

Query: 588 LKARAQSAKTATKVSEMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFA 409
           L ARA++AKTATKV EM+G VNTSGALSAFEKMEEKVM MES+A+AL Q+G D+LEGKF 
Sbjct: 210 LLARARTAKTATKVQEMIGTVNTSGALSAFEKMEEKVMAMESEADALTQIGTDELEGKFQ 269

Query: 408 MLETTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELNELRKKTKE 229
           MLET+SVDDDLA ++KELSGSS KGELPPGR+T A+ +  PF+D+EIE ELNELR+K  +
Sbjct: 270 MLETSSVDDDLADLKKELSGSSKKGELPPGRSTVAASTRYPFKDSEIENELNELRRKAND 329

Query: 228 Y 226
           +
Sbjct: 330 F 330

to top

>Y617_SYNY3 (Q55707) Hypothetical protein sll0617|
          Length = 267

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 46/126 (36%), Positives = 78/126 (61%), Gaps = 9/126 (7%)
 Frame = -1

Query: 588 LKARAQSAKTATKVSEMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFA 409
           L+ARA++AK   ++ + LG + TS A SAFE+ME KV+ ME+ ++A G+L    +E +FA
Sbjct: 139 LQARAKAAKANAELQQTLGGLGTSSATSAFERMENKVLDMEATSQAAGELAGFGIENQFA 198

Query: 408 MLETTS-VDDDLAQMRKELSGSSLKG--------ELPPGRTTTASKSGSPFRDTEIETEL 256
            LE +S V+D+LA ++  ++G +L G        E  P  ++  + + S   D  I+ EL
Sbjct: 199 QLEASSGVEDELAALKASMAGGALPGTSAATPQLEAAPVDSSVPANNASQ-DDAVIDQEL 257

Query: 255 NELRKK 238
           ++LR++
Sbjct: 258 DDLRRR 263

to top

>PSPA_DEIRA (Q9RUB7) Phage shock protein A homolog|
          Length = 223

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
 Frame = -1

Query: 588 LKARAQSAKTATKVSEMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGAD-DLEGKF 412
           L AR ++A+    +  + G     GA+ AF +ME+KV  ME + +A+G+L  D D + + 
Sbjct: 139 LAARQKTAQAGETLDRVSGFSKAGGAMDAFNEMEQKVAGMEDRNKAMGELRNDQDFDAQL 198

Query: 411 AML-ETTSVDDDLAQMRKELSGSS 343
             L     VDD LA ++ ++  S+
Sbjct: 199 KDLGRDKDVDDALAALKAKVQSSN 222

to top

>PSPA_BACSU (P54617) Phage shock protein A homolog|
          Length = 226

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
 Frame = -1

Query: 588 LKARAQSAKTATKVSEMLGNVN-TSGALSAFEKMEEKVMTMESQAEALGQLGA------D 430
           +KA+   AKT  +++++  +V+ TS ++SAF +ME+KV     QA A+ +L +       
Sbjct: 138 IKAKWAVAKTQERMNKLGASVSSTSQSMSAFGRMEDKVNKALDQANAMAELNSAPQDDMA 197

Query: 429 DLEGKFAMLETTSVDDDLAQMRKEL 355
           DL  K+    ++ VDD+LA ++ ++
Sbjct: 198 DLSAKYDTGGSSQVDDELAALKAKM 222

to top

>NUF1_YEAST (P32380) Protein NUF1 (Spindle poly body spacer protein SPC110)|
          Length = 944

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
 Frame = -1

Query: 519 SGALSAFEKMEEKVMTMESQAEAL-GQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSS 343
           SG +   E+ME K+  +E + + +  Q+   +       L+  S +D+L  +  EL+   
Sbjct: 223 SGCIEEREQMERKLAELERKLKTVKDQVLELENNSDVQSLKLRSKEDELKNLMNELN--- 279

Query: 342 LKGELPPGRTTTASKSGSPFRDTEIETELNELRKKTKE 229
              EL         KS +  +DT++E + NELRK+T E
Sbjct: 280 ---EL---------KSNAEEKDTQLEFKKNELRKRTNE 305

to top

>CHM2B_BOVIN (Q3SX42) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b)
          Length = 213

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
 Frame = -1

Query: 582 ARAQSAKTATKVSEMLGNVNTSGALSAFEKMEEKV-MTMESQAEALGQL--GADDLEGKF 412
           A + +AKT   V++ +    T   +  F+K   K+ MT E   + L  +  G+DD E   
Sbjct: 101 AMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQ 160

Query: 411 AMLETTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELNEL 247
            +     V+  L ++  E+SG   K         +AS S S   D EIE +L  L
Sbjct: 161 DI-----VNQVLDEIGIEISGKMAKAPSAARSLPSASTSKSTISDEEIERQLKAL 210

to top

>CHM1B_XENTR (Q6DF27) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
 Frame = -1

Query: 582 ARAQSAKTATKVSEMLGNV-----------NTSGALSAFEKMEEKVMTMESQAEALGQLG 436
           AR Q+A T  KV++ +  V           N     +  +K E +  T++ Q + +    
Sbjct: 77  ARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQM---- 132

Query: 435 ADDLEGKFAMLET--TSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIET 262
            +D       L T    VD+ L +M  E +G  L  ELP G+T +   S +     E+  
Sbjct: 133 -EDTMSNTTTLTTPQNQVDNLLHEMADE-AGLDLNMELPQGQTGSVGTSVASTEQDELSQ 190

Query: 261 ELNELR 244
            L  LR
Sbjct: 191 RLARLR 196

to top

>CHM1B_XENLA (Q7SZB5) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
 Frame = -1

Query: 582 ARAQSAKTATKVSEMLGNV-----------NTSGALSAFEKMEEKVMTMESQAEALGQLG 436
           AR Q+A T  KV++ +  V           N     +  +K E +  T++ Q + +    
Sbjct: 77  ARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQM---- 132

Query: 435 ADDLEGKFAMLET--TSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIET 262
            +D       L T    VD+ L +M  E +G  L  ELP G+T +   S +     E+  
Sbjct: 133 -EDTMSNTTTLTTPQNQVDNLLHEMADE-AGLDLSMELPQGQTGSVGTSVASTEQDELSQ 190

Query: 261 ELNELR 244
            L  LR
Sbjct: 191 RLARLR 196

to top

>CHM1B_HUMAN (Q7LBR1) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b) (CHMP1.5)
           (Vacuolar protein sorting 46-2) (Vps46-2) (hVps46-2)
          Length = 199

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 11/124 (8%)
 Frame = -1

Query: 582 ARAQSAKTATKVSEMLGNV-----------NTSGALSAFEKMEEKVMTMESQAEALGQLG 436
           AR Q+A T  KV++ +  V           N     +  +K E +  T++ Q + +    
Sbjct: 77  ARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQM---- 132

Query: 435 ADDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETEL 256
            D +     +    +  D L Q   + +G  L  ELP G+T +   S +     E+   L
Sbjct: 133 EDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASAEQDELSQRL 192

Query: 255 NELR 244
             LR
Sbjct: 193 ARLR 196

to top

>CH1B2_MOUSE (Q9CQD4) Charged multivesicular body protein 1b-2|
           (Chromatin-modifying protein 1b-2) (CHMP1b-2)
          Length = 199

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 11/124 (8%)
 Frame = -1

Query: 582 ARAQSAKTATKVSEMLGNV-----------NTSGALSAFEKMEEKVMTMESQAEALGQLG 436
           AR Q+A T  KV++ +  V           N     +  +K E +  T++ Q + +    
Sbjct: 77  ARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFETLDVQTQQM---- 132

Query: 435 ADDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETEL 256
            D +     +    +  D L Q   + +G  L  ELP G+T +   S +     E+   L
Sbjct: 133 EDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGASVASTEQDELSQRL 192

Query: 255 NELR 244
             LR
Sbjct: 193 ARLR 196

to top

>CH1B1_MOUSE (Q99LU0) Charged multivesicular body protein 1b-1|
           (Chromatin-modifying protein 1b-1) (CHMP1b-1)
          Length = 199

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 11/124 (8%)
 Frame = -1

Query: 582 ARAQSAKTATKVSEMLGNV-----------NTSGALSAFEKMEEKVMTMESQAEALGQLG 436
           AR Q+A T  KV++ +  V           N     +  +K E +  T++ Q + +    
Sbjct: 77  ARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQM---- 132

Query: 435 ADDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETEL 256
            D +     +    +  D L Q   + +G  L  ELP G+T +   S +     E+   L
Sbjct: 133 EDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASAEQDELSQRL 192

Query: 255 NELR 244
             LR
Sbjct: 193 ARLR 196

to top

>CHM1B_BOVIN (Q5E994) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
 Frame = -1

Query: 582 ARAQSAKTATKVSEMLGNV-----------NTSGALSAFEKMEEKVMTMESQAEALGQLG 436
           AR Q+A T  KV++ +  V           N     +  +K E +  T++ Q + +    
Sbjct: 77  ARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQM---- 132

Query: 435 ADDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETEL 256
            D +     +       D L Q   + +G  L  ELP G+T +   S +     E+   L
Sbjct: 133 EDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASAEQDELSQRL 192

Query: 255 NELR 244
             LR
Sbjct: 193 ARLR 196

to top

>KMHA_DICDI (P42527) Myosin heavy chain kinase A (EC 2.7.11.7) (MHCK A)|
          Length = 1146

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = -1

Query: 507 SAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGEL 328
           S  +K+EEK      Q + L     + L+ K  ++ET  +D   +++RK    S+  G L
Sbjct: 275 SIIKKVEEKEKKKSEQNQLLFDSKIESLKDKIKIIETQQLDTS-SEVRKLKLESTSSGNL 333

Query: 327 PPGRTTTASK--SGSPFRDTEIETELNELRK 241
             G   T+ +  S S F  + +    N + K
Sbjct: 334 MAGLNGTSGRPSSSSHFIPSSVSAAANNINK 364

to top

>SNF7_NEUCR (Q871Y8) Vacuolar sorting protein snf-7 (Vacuolar protein|
           sorting-associated protein vps-32)
          Length = 228

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
 Frame = -1

Query: 585 KARAQSAKTATKVSEM-----LGNVNTS----GALSAFEKMEEKVMTMESQAEALGQLGA 433
           K  A+ A    KV+E      LG + T      A+ +     E +  M++  EA+G++  
Sbjct: 61  KTAAKQALRRKKVAESTLETTLGQITTLEQQINAIESANINRETLAAMQAAREAMGKI-- 118

Query: 432 DDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELN 253
               GK   L    VD+++A++++    + L  E+      T++  G P  + E+E EL 
Sbjct: 119 ---HGK---LTPEKVDEEMAKLQE---ANDLSNEI--ATAITSANIGQPIDEGELEDELE 167

Query: 252 ELRKK 238
           +L+++
Sbjct: 168 KLQQE 172

to top

>CHM1B_CHICK (Q5ZKX1) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
 Frame = -1

Query: 582 ARAQSAKTATKVSE-MLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAM 406
           AR Q+A T  KV++ M G V +  A      +E+    M+        L     + +  M
Sbjct: 77  ARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMENTM 136

Query: 405 LETTSVD------DDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELNELR 244
             TT++       D L Q   + +G  L  ELP G+T +   S +     E+   L  LR
Sbjct: 137 SNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASAEQDELSQRLARLR 196

to top

>UT14A_MOUSE (Q640M1) U3 small nucleolar RNA-associated protein 14 homolog A|
           (Juvenile spermatogonial depletion-like X-linked
           protein) (Jsd-like X-linked protein)
          Length = 767

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
 Frame = -1

Query: 567 AKTATKVSEMLGNVNTSGALSAFEKMEE----KVMTMESQ-----AEALGQLGADDLEGK 415
           AK A K  E L  V+   AL   EKME+    + M+++ Q     A++   +   DLE +
Sbjct: 261 AKKALKDFEQLRKVDPDAALEELEKMEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEAR 320

Query: 414 FAMLETTSVDDDLAQMRKELSGSSLKG 334
            AM E  + + +L Q  + +S S  +G
Sbjct: 321 QAMQEQLAKNKELTQKLQVVSESEEEG 347

to top

>UT14A_HUMAN (Q9BVJ6) U3 small nucleolar RNA-associated protein 14 homolog A|
           (Antigen NY-CO-16)
          Length = 771

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
 Frame = -1

Query: 567 AKTATKVSEMLGNVNTSGALSAFEKMEE----KVMTMESQ-----AEALGQLGADDLEGK 415
           AK A K  E L  VN + AL   EK+E+    + M+++ Q     A++   +   DLE +
Sbjct: 261 AKKALKEFEQLRKVNPAAALEELEKIEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEAR 320

Query: 414 FAMLETTSVDDDLAQMRKELSGS 346
            AM E  S + +L Q  +  S S
Sbjct: 321 QAMQEQLSKNKELTQKLQVASES 343

to top

>CHM2B_PONPY (Q5RAV2) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b)
          Length = 213

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
 Frame = -1

Query: 582 ARAQSAKTATKVSEMLGNVNTSGALSAFEKMEEKV-MTMESQAEALGQL--GADDLEGKF 412
           A + +AKT   V++ +    T   +  F+K   K+ MT E   + L  +  G+DD E   
Sbjct: 101 AMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQ 160

Query: 411 AMLETTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELNEL 247
            +     V+  L ++  E+SG   K         +AS S +   D EIE +L  L
Sbjct: 161 DI-----VNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEIERQLKAL 210

to top

>CHM2B_MOUSE (Q8BJF9) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b)
          Length = 213

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
 Frame = -1

Query: 582 ARAQSAKTATKVSEMLGNVNTSGALSAFEKMEEKV-MTMESQAEALGQL--GADDLEGKF 412
           A + +AKT   V++ +    T   +  F+K   K+ MT E   + L  +  G+DD E   
Sbjct: 101 AMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQ 160

Query: 411 AMLETTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELNEL 247
            +     V+  L ++  E+SG   K         +AS S +   D EIE +L  L
Sbjct: 161 DI-----VNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEIERQLKAL 210

to top

>CHM2B_HUMAN (Q9UQN3) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b) (CHMP2.5)
           (Vacuolar protein sorting 2-2) (Vps2-2) (hVps2-2)
          Length = 213

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
 Frame = -1

Query: 582 ARAQSAKTATKVSEMLGNVNTSGALSAFEKMEEKV-MTMESQAEALGQL--GADDLEGKF 412
           A + +AKT   V++ +    T   +  F+K   K+ MT E   + L  +  G+DD E   
Sbjct: 101 AMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQ 160

Query: 411 AMLETTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELNEL 247
            +     V+  L ++  E+SG   K         +AS S +   D EIE +L  L
Sbjct: 161 DI-----VNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEIERQLKAL 210

to top

>CHM1B_BRARE (Q7ZVB1) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 14/127 (11%)
 Frame = -1

Query: 582 ARAQSAKTATKVSEMLGNV--------------NTSGALSAFEKMEEKVMTMESQAEALG 445
           AR Q+A T  +V++ +  V                SG +  FE+  E +    +Q E   
Sbjct: 77  ARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDVQTAQME--- 133

Query: 444 QLGADDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIE 265
               D +     +       D L     + +G  L  ELP G+T +   S +     E+ 
Sbjct: 134 ----DSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVGTSVASAEQDELS 189

Query: 264 TELNELR 244
             L +LR
Sbjct: 190 QRLAKLR 196

to top

>ATG16_ASPFU (Q4WVH5) Autophagy protein 16|
          Length = 172

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
 Frame = -1

Query: 519 SGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSSL 340
           S AL+A ++ E+  + + + ++   ++ +   +G   +  T      +    K L+G S+
Sbjct: 9   SAALAARDRREKANVALYNASDRTSRIASTGAQGAQYLTGTGDKHTAIPAAGKSLAGPSV 68

Query: 339 KGELPPGRTTTA----SKSGSPFRDTEIETELNELRKKTKE 229
              L   R   +    ++S    R TE+ TEL +LRK++ +
Sbjct: 69  PDILAATRADLSEAQRARSELQARLTELSTELEKLRKRSTQ 109

to top

>TAH18_CRYNE (Q5KER0) Probable NADPH reductase TAH18 (EC 1.-.-.-)|
          Length = 617

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = -1

Query: 501 FEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGELPP 322
           F+  + K  T  S      Q   DD+     M+E TS  D++  +   L    L   LPP
Sbjct: 255 FDDPDTKPYTAGSICSLQPQSREDDVNMFLEMMELTSQADEVVTIESLLDEQPLPSHLPP 314

Query: 321 GRTTTASKS 295
             T T  +S
Sbjct: 315 AGTPTTLRS 323

to top

>HAM1_PROMP (Q7V316) HAM1 protein homolog|
          Length = 191

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -1

Query: 300 KSGSPFRDTEIETELNELRKKTKEY*ILFTGHVCVARLDGTS*PKNPGSYS 148
           ++G  FR+  I+ + +E+ KKT+ Y I     +C+  LDG      PG YS
Sbjct: 39  ENGITFRENAIK-KASEVSKKTRNYAIADDSGICIDALDG-----RPGIYS 83

to top

>MPS1_BRARE (Q8AYG3) Mitotic checkpoint serine/threonine-protein kinase Mps1|
           (EC 2.7.12.2) (Monopolar spindle 1) (Nightcap protein)
          Length = 983

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = -2

Query: 338 KASFLRVEQPQPANPAALSGTQRLRRS*MSCERRPKSIRFYLQDMSVSPGLMEPPSRRT 162
           K   L  E  +  + +AL  TQ  RRS  +CE +P S   +  D   SP     P  RT
Sbjct: 174 KRQLLSHEDKENLSVSALDHTQGSRRSDGTCELKPSSTFLHSSDQKFSPQEENGPVWRT 232

to top

>FTSH_STRR6 (P59652) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 652

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -1

Query: 543 EMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQ 370
           E++ NV T+GA + FE+  +    M ++     +LG    EG  AML   S    +++
Sbjct: 512 EIIFNVQTTGASNDFEQATQMARAMVTEYGMSEKLGPVQYEGNHAMLGAQSPQKSISE 569

to top

>FTSH_STRPN (O69076) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 652

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -1

Query: 543 EMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQ 370
           E++ NV T+GA + FE+  +    M ++     +LG    EG  AML   S    +++
Sbjct: 512 EIIFNVQTTGASNDFEQATQMARAMVTEYGMSEKLGPVQYEGNHAMLGAQSPQKSISE 569

to top

>RAD50_AERPE (Q9YFZ1) DNA double-strand break repair rad50 ATPase|
          Length = 919

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
 Frame = -1

Query: 498 EKMEEKVMTMESQAEALGQL---GADDLEGKFAMLETTSVDDDLAQMRKELSG-----SS 343
           E+  EK+ T+ S+++ L ++    A+DL  +  +    S+DD L + R+ L G     S+
Sbjct: 600 EEAREKLKTLSSESKKLERMLVSKAEDLATRLGITAYRSLDDLLEKAREALEGVDKELSA 659

Query: 342 LKGELPPGRTTTASKSGSPFRDTEIETELNELRKKTKE 229
           ++  L   R      +   +   ++   L EL  + K+
Sbjct: 660 IERRLEEARRLKEEAAKLKWEAEQVMKRLEELEAEEKK 697

to top

>Y205_MYCPN (P75571) Hypothetical protein MPN205 (GT9_orf438V)|
          Length = 438

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = -1

Query: 405 LETTSVDDDLAQMRKELSGSSLKGELPPGRTTTASKSGSPFRDTEIETELNELRKKT 235
           L+  + + D A+  ++L G   K       T+T ++ GS   DT+++    E++KK+
Sbjct: 148 LKVKNAEADTAKSNEKLQGDESKSSNGSSSTSTTTQRGSTNSDTKVKALKIEVKKKS 204

to top

>MYS2_DICDI (P08799) Myosin-2 heavy chain, non muscle (Myosin II heavy chain, non|
            muscle)
          Length = 2116

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
 Frame = -1

Query: 564  KTATKVSEMLGNVNTSGALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD 385
            + ATK    +G       +       E+     +QA+         LEG+   L     D
Sbjct: 1830 EAATKTQTEIGAAKLEDQIDELRSKLEQEQAKATQADK----SKKTLEGEIDNLRAQIED 1885

Query: 384  DDLAQMRKELSGSSLKGELPPGRTTTA----SKSGSPFRDTEIETELNELRKKTKE 229
            +   +MR E    +L+GEL   R T      SKS +      +E EL + R+  ++
Sbjct: 1886 EGKIKMRLEKEKRALEGELEELRETVEEAEDSKSEAEQSKRLVELELEDARRNLQK 1941

to top

>FLIP1_RAT (Q8K4T4) Filamin-A-interacting protein 1 (FILIP)|
          Length = 1212

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
 Frame = -1

Query: 498 EKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTS-----VDDDLAQMRKELS-----G 349
           E+M  K+   ES    L +L    L  +   LE T+      +++L ++R++++      
Sbjct: 314 EEMNAKLANQESHNRQL-RLKLVGLSQRIEELEETNKSLQKAEEELQELREKIAKGECGN 372

Query: 348 SSLKGELPPGRTTTASKSGSPFRDTEIETELNELRKKTKE 229
           SSL  E+   R       G     T+ E +  EL+KK +E
Sbjct: 373 SSLMAEVESLRKRVLEMEGKDEEITKTEAQCRELKKKLQE 412

to top

>Y1126_METTH (O27198) Hypothetical UPF0348 protein MTH1126|
          Length = 365

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
 Frame = -1

Query: 492 MEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSSLK---GELPP 322
           +EE    + S A ALG+LG  D  GKF  +E         ++R+ +S   L+   G LPP
Sbjct: 177 LEEDNYVITSLARALGKLGF-DFRGKFIFVERIGGVSG-TEIRRAVSDGDLQRVAGMLPP 234

Query: 321 GRTTTASK----SGSPFRDTEIETEL 256
                 S+      +P  D  +E E+
Sbjct: 235 ETMDVLSEEIEAGRAPLHDMRLEDEI 260

to top

>SMC3_PONPY (Q5R4K5) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6)
          Length = 1217

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = -1

Query: 504  AFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD---DDLAQMRKE---LSGSS 343
            + + +E  +  MES  E+L      DL  + ++ +   VD   D++ Q+++E   L    
Sbjct: 759  SLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNER 818

Query: 342  LKGELPPGRTTTASKSGSPFRDTEIETELNELRK 241
            +K E    R  T        R  ++E ELNELR+
Sbjct: 819  IKLEGIITRVETYLNENLRKRLDQVEQELNELRE 852

to top

>SMC3_MOUSE (Q9CW03) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6) (Chromosome segregation protein SmcD)
            (Bamacan) (Basement membrane-associated chondroitin
            proteoglycan) (Mad member-interacting protein 1)
          Length = 1217

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = -1

Query: 504  AFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD---DDLAQMRKE---LSGSS 343
            + + +E  +  MES  E+L      DL  + ++ +   VD   D++ Q+++E   L    
Sbjct: 759  SLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNER 818

Query: 342  LKGELPPGRTTTASKSGSPFRDTEIETELNELRK 241
            +K E    R  T        R  ++E ELNELR+
Sbjct: 819  IKLEGIITRVETYLNENLRKRLDQVEQELNELRE 852

to top

>SMC3_HUMAN (Q9UQE7) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6) (Chromosome-associated polypeptide)
            (hCAP) (Bamacan) (Basement membrane-associated
            chondroitin proteoglycan)
          Length = 1217

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = -1

Query: 504  AFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD---DDLAQMRKE---LSGSS 343
            + + +E  +  MES  E+L      DL  + ++ +   VD   D++ Q+++E   L    
Sbjct: 759  SLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNER 818

Query: 342  LKGELPPGRTTTASKSGSPFRDTEIETELNELRK 241
            +K E    R  T        R  ++E ELNELR+
Sbjct: 819  IKLEGIITRVETYLNENLRKRLDQVEQELNELRE 852

to top

>CWF16_SCHPO (Q9P7C5) Cell cycle control protein cwf16|
          Length = 270

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
 Frame = -1

Query: 498 EKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGS-----SLKG 334
           EK+E+K +  + Q +    L  D+L  K A     ++DD +A ++++  GS     S K 
Sbjct: 141 EKLEQKTLDTKRQMQISDAL--DELREKSARRSRVNIDDAIALLKEDAYGSIEEEESKKR 198

Query: 333 ELPPGRTTTASKSGSPFRDTEIETELNELRKKTKE 229
           +         +KS    +D EI   LN      KE
Sbjct: 199 KFEEEEIDREAKSLFSSQDGEIIRRLNAETTVEKE 233

to top

>Y598_METMA (Q8PZ96) UPF0218 protein MM0598|
          Length = 195

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 367 EKRTVRELFERRASSG*NNHSQQIRQPFPGHRD 269
           +K  +R LFE+  S   NN   +IR+   GH+D
Sbjct: 162 KKEEIRALFEKLISKNQNNELDKIRRILDGHKD 194

to top

>SMC3_BOVIN (O97594) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6)
          Length = 1218

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = -1

Query: 504  AFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD---DDLAQMRKE---LSGSS 343
            + + +E  +  MES  E+L      DL  + ++ +   VD   D++ Q+++E   L    
Sbjct: 759  SLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNER 818

Query: 342  LKGELPPGRTTTASKSGSPFRDTEIETELNELRK 241
            +K E    R  T        R  ++E ELNELR+
Sbjct: 819  IKLEGIITRVETYLNENLRKRLDQVEQELNELRE 852

to top

>SMC3_RAT (P97690) Structural maintenance of chromosome 3 (Chondroitin sulfate|
            proteoglycan 6) (Chromosome segregation protein SmcD)
            (Bamacan) (Basement membrane-associated chondroitin
            proteoglycan)
          Length = 1191

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = -1

Query: 504  AFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD---DDLAQMR---KELSGSS 343
            + + +E  +  MES  E+L      DL  + ++ +   VD   D++ Q++   ++L    
Sbjct: 759  SLQSLEASLHAMESTRESLKAELGTDLPSQLSLEDQKRVDALNDEIRQLQQKNRQLLNER 818

Query: 342  LKGELPPGRTTTASKSGSPFRDTEIETELNELRK 241
            +K E    R  T        R  ++E ELNELR+
Sbjct: 819  IKLEGIITRVETYLNENLRKRLDQVEQELNELRE 852

to top

>FLIP1_HUMAN (Q7Z7B0) Filamin-A-interacting protein 1 (FILIP)|
          Length = 1213

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
 Frame = -1

Query: 498 EKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTS-----VDDDLAQMRKELS-----G 349
           E+M  K+   ES    L +L    L  +   LE T+      +++L ++R +++      
Sbjct: 315 EEMNAKLANQESHNRQL-RLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGN 373

Query: 348 SSLKGELPPGRTTTASKSGSPFRDTEIETELNELRKKTKE 229
           SSL  E+   R       G     T+ E++  ELRKK +E
Sbjct: 374 SSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQE 413

to top

>PHNC_TREDE (Q73P71) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)|
          Length = 256

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 555 TKVSEMLGNVNTSGALSAFEKMEEKVM-TMESQAEALGQLGADDLEGKFAMLETTSVDDD 379
           +K+  +  N N    L+A E +    + ++ S   ALG    ++ E  FA+L+T  +++ 
Sbjct: 80  SKIGMIFQNYNLVERLNAVENVLHGCLGSIPSYRGALGLYTEEEKEKAFALLQTVGMEEF 139

Query: 378 LAQMRKELSG 349
             Q   ELSG
Sbjct: 140 AFQRCSELSG 149

to top

>Y4479_BORBR (Q7WF01) UPF0271 protein BB4479|
          Length = 252

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 191 GLMEPPSRRTPE--VIALQISAMCIRGSEPPSALF 93
           G++   S RTP+   +ALQ   +CI G +P + +F
Sbjct: 200 GMVRDGSVRTPDGQTVALQADTLCIHGDQPDALVF 234

to top

>Y4006_BORPA (Q7W3M5) UPF0271 protein BPP4006|
          Length = 252

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 191 GLMEPPSRRTPE--VIALQISAMCIRGSEPPSALF 93
           G++   S RTP+   +ALQ   +CI G +P + +F
Sbjct: 200 GMVRDGSVRTPDGQTVALQADTLCIHGDQPDALVF 234

to top

>Y150_BORPE (O30444) UPF0271 protein BP0150|
          Length = 252

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 191 GLMEPPSRRTPE--VIALQISAMCIRGSEPPSALF 93
           G++   S RTP+   +ALQ   +CI G +P + +F
Sbjct: 200 GMVRDGSVRTPDGQTVALQADTLCIHGDQPDALVF 234


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,433,037
Number of Sequences: 219361
Number of extensions: 1722684
Number of successful extensions: 4999
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 4842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4996
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result