ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17f17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L28091.1|BLYTRA Hordeum vulgare transmembrane protein mRNA fr... 904 0.0
2emb|X57554.1|HVBLT14 H. vulgare BLT14 mRNA 882 0.0
3emb|AJ132439.1|TAE132439 Triticum aestivum mRNA for protein enco... 353 3e-94
4gb|M60733.1|BLYCLDAB Hordeum vulgare cold-regulated mRNA, partia... 172 7e-40
5gb|AF271260.1|AF271260 Triticum aestivum cold-responsive protein... 147 4e-32
6gb|L28093.1|WHTCOREG Triticum aestivum pTACR7 (tacr7) mRNA, part... 101 2e-18
7emb|Z23257.1|SCRLT141A S.cereale RLT1412 mRNA, complete CDS 101 2e-18
8emb|X97917.1|HVBLT142 H.vulgare blt14.2 gene 100 8e-18
9emb|X97916.1|HVBLT141 H.vulgare blt14.1 gene 94 5e-16
10gb|L28092.1|BLYTRAA Hordeum vulgare transmembrane protein mRNA f... 94 5e-16
11gb|AF069331.2|AF069331 Hordeum vulgare clone BLTI-5 low temperat... 86 1e-13
12emb|Y14061.1|HVY14061 Hordeum vulgare mRNA for a cold-regulated ... 86 1e-13
13emb|Z23258.1|SCACCPROA S.cereale acclimation protein mRNA, compl... 68 3e-08
14ref|XM_414354.1| PREDICTED: Gallus gallus similar to cadherin EG... 42 1.6
15emb|AL021175.1|CEY6E2A Caenorhabditis elegans YAC Y6E2A, complet... 42 1.6
16emb|CR392039.8| Human DNA sequence from clone bP-2171C21 on chro... 42 1.6
17gb|AC069302.4| Homo sapiens BAC clone RP11-322J23 from 4, comple... 42 1.6
18ref|NM_074515.3| Caenorhabditis elegans Seven TM Receptor family... 42 1.6
19gb|AF033703.1|AF033703 Notoacmaea petterdi histone H3 gene, part... 42 1.6
20gb|AC153530.9| Mus musculus 10 BAC RP23-202A18 (Roswell Park Can... 40 6.3
21emb|AL591393.10| Human DNA sequence from clone RP11-224J22 on ch... 40 6.3
22emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segmen... 40 6.3
23emb|BX248356.1| Corynebacterium diphtheriae gravis NCTC13129, co... 40 6.3
24dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 6.3
25gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complet... 40 6.3
26gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, comple... 40 6.3
27dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.3
28dbj|AK132876.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.3
29gb|AC152979.2| Mus musculus 10 BAC RP23-325K4 (Roswell Park Canc... 40 6.3
30gb|AC012519.9|AC012519 Homo sapiens 3 BAC RP11-1036F1 (Roswell P... 40 6.3
31emb|CR854904.9| Zebrafish DNA sequence from clone CH211-214F6 in... 40 6.3
32gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 6.3 
>gb|L28091.1|BLYTRA Hordeum vulgare transmembrane protein mRNA fragment
          Length = 541

 Score =  904 bits (456), Expect = 0.0
 Identities = 462/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtagcgcacaaggaacgaaaaatacgagacgggaactggaaataaatacagatgacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atgtagcgcacaaggaacgaaaaatacgagacgggaactggaaataaatacagatgacag 436

                                                                       
Query: 61  ttgatacagacgctcagtaccgaacatggacatgagcgaaacgtcggcctttttcttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttgatacagacgctcagtaccgaacatggacatgagcgaaacgtcggcctttttcttcct 376

                                                                       
Query: 121 ggcggtgctacctatagaatctaaagggacaaggcgagctttagcttcttgtagcgccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 375 ggcggtgctacctatagaatctaaagggacaaggcgagctttagcttcttgtagcgccac 316

                                                                       
Query: 181 cacatgaggtagagatgatcatgggccgatagcagggatcccagggatcaccaccagcgg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gacatgaggtagagatgatcatgggccgatagcagggatcccagggatcaccaccagcgg 256

                                                                       
Query: 241 gccggtaatggtgcttgttccggtaccggttccccccagcagaggcaagtccaaagcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gccggtaatggtgcttgttccggtaccggttccccccagcagaggcaagtccaaagcctt 196

                                                                       
Query: 301 ggagtcgccgacgccaccgctggcaccggcaccgtgtgtcgctgcaaccttctctttcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ggagtcgccgacgccaccgctggcaccggcaccgtgtgtcgctgcaaccttctctttcag 136

                                                                       
Query: 361 ctcccgcccgtcgcatgacgcgagcaccaccagtagcaggagcgcgacggcgagactctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ctcccgcccgtcgcatgacgcgagcaccaccagtagcaggagcgcgacggcgagactctt 76

                                                       
Query: 421 tgccattgctcactgagaagttttgatattactactgacgagac 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  tgccattgctcactgagaagttttgatattactactgacgagac 32
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>emb|X57554.1|HVBLT14 H. vulgare BLT14 mRNA
          Length = 514

 Score =  882 bits (445), Expect = 0.0
 Identities = 461/465 (99%), Gaps = 1/465 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtagcgcacaaggaacgaaaaatacgagacgggaactggaaataaatacagatgacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atgtagcgcacaaggaacgaaaaatacgagacgggaactggaaataaatacagatgacag 407

                                                                       
Query: 61  ttgatacagacgctcagtaccgaacatggacatgagcgaaacgtcggcctttttcttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttgatacagacgctcagtaccgaacatggacatgagcgaaacgtcggcctttttcttcct 347

                                                                       
Query: 121 ggcggtgctacctatagaatctaaagggacaaggcgagctttagcttcttgtagcgccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ggcggtgctacctatagaatctaaagggacaaggcgagctttagcttcttgtagcgccag 287

                                                                       
Query: 181 cacatgaggtagagatgatcatgggccgatagcagggatcccagggatcaccaccagcgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cacatgaggtagagatgatcatgggccgatagcagggatcccagggatcaccaccagcgg 227

                                                                       
Query: 241 gccggtaatggtgcttgttccggtaccggttccccccagcagaggcaagtccaaagcctt 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 226 gccggtaatggtgcttgttccggtaccggttccccccagcagcggcaagtccaaagcctt 167

                                                                       
Query: 301 ggagtcgccgacgccaccgctggcaccggcaccgtgtgtcgctgcaaccttctctttcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 166 ggagtcgccgacgccaccgctggcaccggcaccgtgtgtcgctgcaaccttctctttcac 107

                                                                       
Query: 361 ctcccgcccgtcgcatgacgcgagcaccaccagtagca-ggagcgcgacggcgagactct 419
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 106 gtcccgcccgtcgcatgacgcgagcaccaccagtagcacggagcgcgacggcgagactct 47

                                                        
Query: 420 ttgccattgctcactgagaagttttgatattactactgacgagac 464
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  ttgccattgctcactgagaagttttgatattactactgacgagac 2
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>emb|AJ132439.1|TAE132439 Triticum aestivum mRNA for protein encoded by lt1.1 gene, partial
          Length = 416

 Score =  353 bits (178), Expect = 3e-94
 Identities = 323/368 (87%), Gaps = 5/368 (1%)
 Strand = Plus / Minus

                                                                       
Query: 11  caaggaacgaaaaatacgaga-cgggaactggaaataaata---cagatgacagttgata 66
           ||||||||||||||||||||| |  |||||||||||| |||   ||||||||||||||||
Sbjct: 370 caaggaacgaaaaatacgagaacatgaactggaaatagatagtacagatgacagttgata 311

                                                                       
Query: 67  cagacgctcagtaccgaacatggacatgagcgaaacgtcggcctttttcttcctggcggt 126
           ||| |||||||||||||||||||| |||||| ||||||| || |||| ||||| ||||||
Sbjct: 310 caggcgctcagtaccgaacatggaaatgagcaaaacgtccgctttttccttcccggcggt 251

                                                                       
Query: 127 gctacctatagaatctaaagggacaaggcgagctttagcttcttgtagcgccagcacatg 186
           |||||||| ||||||||||| ||||||||||||||||||| ||||||  |||||||||||
Sbjct: 250 gctacctacagaatctaaagcgacaaggcgagctttagctccttgtaa-gccagcacatg 192

                                                                       
Query: 187 aggtagagatgatcatgggccgatagcagggatcccagggatcaccaccagcgggccggt 246
           ||  ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||
Sbjct: 191 agccagagatgatcatgggccaatagcagggatcccaggaagcaccaccagcgggccggt 132

                                                                       
Query: 247 aatggtgcttgttccggtaccggttccccccagcagaggcaagtccaaagccttggagtc 306
           ||||||||| ||||| |||||||||||||| |||| |||||||||||| ||||| || ||
Sbjct: 131 aatggtgctggttcccgtaccggttcccccgagcaaaggcaagtccaacgccttagactc 72

                                                                       
Query: 307 gccgacgccaccgctggcaccggcaccgtgtgtcgctgcaaccttctctttcagctcccg 366
           ||||||||| || |  |||||  |  |  | ||||||||||||||||| |||||||||| 
Sbjct: 71  gccgacgccgccacccgcacctacgacacgcgtcgctgcaaccttctcattcagctccct 12

                   
Query: 367 cccgtcgc 374
           ||| ||||
Sbjct: 11  cccttcgc 4
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>gb|M60733.1|BLYCLDAB Hordeum vulgare cold-regulated mRNA, partial cds
          Length = 770

 Score =  172 bits (87), Expect = 7e-40
 Identities = 123/135 (91%)
 Strand = Plus / Minus

                                                                       
Query: 295 agccttggagtcgccgacgccaccgctggcaccggcaccgtgtgtcgctgcaaccttctc 354
           ||||||||| ||||||||||| |||| | ||||||||||| ||||||||||| |||||||
Sbjct: 387 agccttggactcgccgacgccgccgccgacaccggcaccgcgtgtcgctgcagccttctc 328

                                                                       
Query: 355 tttcagctcccgcccgtcgcatgacgcgagcaccaccagtagcaggagcgcgacggcgag 414
            |||||||||| ||||||||| |||||||||| ||||| |||||||||||||||||||||
Sbjct: 327 gttcagctccctcccgtcgcaggacgcgagcagcaccactagcaggagcgcgacggcgag 268

                          
Query: 415 actctttgccattgc 429
           || ||||||||||||
Sbjct: 267 acactttgccattgc 253



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 229 caccaccagcgggccggtaatggt 252
           |||||||| |||||||||||||||
Sbjct: 546 caccaccaccgggccggtaatggt 523
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>gb|AF271260.1|AF271260 Triticum aestivum cold-responsive protein (Wlt10) mRNA, complete
           cds
          Length = 548

 Score =  147 bits (74), Expect = 4e-32
 Identities = 101/110 (91%)
 Strand = Plus / Minus

                                                                       
Query: 326 ccggcaccgtgtgtcgctgcaaccttctctttcagctcccgcccgtcgcatgacgcgagc 385
           ||||||||| ||||||||||||||||||| |||||||||| ||||||||| |||||||||
Sbjct: 149 ccggcaccgcgtgtcgctgcaaccttctcgttcagctccctcccgtcgcaggacgcgagc 90

                                                             
Query: 386 accaccagtagcaggagcgcgacggcgagactctttgccattgctcactg 435
           ||| ||||||||||||||||| ||||||||| ||| ||||||||| ||||
Sbjct: 89  accgccagtagcaggagcgcggcggcgagacacttcgccattgctaactg 40
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>gb|L28093.1|WHTCOREG Triticum aestivum pTACR7 (tacr7) mRNA, partial cds
          Length = 292

 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                       
Query: 199 tcatgggccgatagcagggatcccagggatcaccaccagcgggccggtaatggtgcttgt 258
           ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct: 292 tcatgggccgagagcagggatcccaggaagcaccaccagcgggccggtaatggtgctggt 233

                          
Query: 259 tccggtaccggttcc 273
            |||||| |||||||
Sbjct: 232 accggtaacggttcc 218



 Score =  101 bits (51), Expect = 2e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                       
Query: 356 ttcagctcccgcccgtcgcatgacgcgagcaccaccagtagcaggagcgcgacggcgaga 415
           |||||||||| |||||||||  |||||||| |||||||||| ||||||||||||||||||
Sbjct: 120 ttcagctccctcccgtcgcagtacgcgagcgccaccagtaggaggagcgcgacggcgaga 61

                      
Query: 416 ctctttgccat 426
           |||||||||||
Sbjct: 60  ctctttgccat 50
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>emb|Z23257.1|SCRLT141A S.cereale RLT1412 mRNA, complete CDS
          Length = 525

 Score =  101 bits (51), Expect = 2e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                       
Query: 356 ttcagctcccgcccgtcgcatgacgcgagcaccaccagtagcaggagcgcgacggcgaga 415
           |||||||||| |||||||||  ||||||||||||||||||||||||||||| ||||||||
Sbjct: 116 ttcagctccctcccgtcgcagtacgcgagcaccaccagtagcaggagcgcggcggcgaga 57

                      
Query: 416 ctctttgccat 426
           | |||||||||
Sbjct: 56  cactttgccat 46



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 59  agttgatacagacgctcagtaccgaacatggacatgagcgaaacg 103
           |||||||||||||||||| ||  |||||||   ||||||||||||
Sbjct: 428 agttgatacagacgctcattaaggaacatgctaatgagcgaaacg 384
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>emb|X97917.1|HVBLT142 H.vulgare blt14.2 gene
          Length = 687

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                       
Query: 357 tcagctcccgcccgtcgcatgacgcgagcaccaccagtagcaggagcgcgacggcgagac 416
           ||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 297 tcagctccctcccatcgcaggacgcgagcaccaccagtagcaggagcgcgacggcaagac 238

                         
Query: 417 tctttgccattgct 430
            ||| |||||||||
Sbjct: 237 acttcgccattgct 224



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 220 cccagggatcaccaccagcgggccggtaatggtgcttgttccggtaccggttccc 274
           |||||| |||||||||||||||||| ||||||| || || |||||||||||||||
Sbjct: 458 cccaggaatcaccaccagcgggccgttaatggtactggtaccggtaccggttccc 404
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>emb|X97916.1|HVBLT141 H.vulgare blt14.1 gene
          Length = 963

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                       
Query: 356 ttcagctcccgcccgtcgcatgacgcgagcaccaccagtagcaggagcgcgacggcgaga 415
           ||||||||||  ||||||||  ||||||||||||||||||||||||||||| ||||||||
Sbjct: 491 ttcagctccctaccgtcgcagtacgcgagcaccaccagtagcaggagcgcggcggcgaga 432

                      
Query: 416 ctctttgccat 426
           | |||||||||
Sbjct: 431 cactttgccat 421



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 305 tcgccgacgccaccgctggcaccggcaccg 334
           |||||||||||||| | |||||||||||||
Sbjct: 557 tcgccgacgccaccaccggcaccggcaccg 528
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>gb|L28092.1|BLYTRAA Hordeum vulgare transmembrane protein mRNA fragment
          Length = 642

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                       
Query: 356 ttcagctcccgcccgtcgcatgacgcgagcaccaccagtagcaggagcgcgacggcgaga 415
           ||||||||||  ||||||||  ||||||||||||||||||||||||||||| ||||||||
Sbjct: 182 ttcagctccctaccgtcgcagtacgcgagcaccaccagtagcaggagcgcggcggcgaga 123

                      
Query: 416 ctctttgccat 426
           | |||||||||
Sbjct: 122 cactttgccat 112



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 305 tcgccgacgccaccgctggcaccggcaccg 334
           |||||||||||||| | |||||||||||||
Sbjct: 248 tcgccgacgccaccaccggcaccggcaccg 219
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>gb|AF069331.2|AF069331 Hordeum vulgare clone BLTI-5 low temperature induced protein mRNA,
           complete cds
          Length = 546

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                       
Query: 356 ttcagctcccgcccgtcgcatgacgcgagcaccaccagtagcaggagcgcgacggcgaga 415
           |||||||||| |||||||||  |||||||| |||||||||| ||||||||||||||||| 
Sbjct: 171 ttcagctccctcccgtcgcagtacgcgagcgccaccagtaggaggagcgcgacggcgagg 112

                      
Query: 416 ctctttgccat 426
           | |||||||||
Sbjct: 111 cactttgccat 101



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 82/99 (82%), Gaps = 3/99 (3%)
 Strand = Plus / Minus

                                                                       
Query: 176 gccagcacatgaggtagagatgatcatgggccgatagcagggatcccagggatcaccacc 235
           ||||||||||||  ||| ||||||||||||     ||||||||||||||| | |||||||
Sbjct: 354 gccagcacatgaactagtgatgatcatgggtg---agcagggatcccaggaagcaccacc 298

                                                  
Query: 236 agcgggccggtaatggtgcttgttccggtaccggttccc 274
           | ||||||| || ||||||| || |||||| | ||||||
Sbjct: 297 aacgggccgttagtggtgctggtaccggtaactgttccc 259
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>emb|Y14061.1|HVY14061 Hordeum vulgare mRNA for a cold-regulated protein
          Length = 484

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                       
Query: 356 ttcagctcccgcccgtcgcatgacgcgagcaccaccagtagcaggagcgcgacggcgaga 415
           |||||||||| |||||||||  |||||||| |||||||||| ||||||||||||||||| 
Sbjct: 94  ttcagctccctcccgtcgcagtacgcgagcgccaccagtaggaggagcgcgacggcgagg 35

                      
Query: 416 ctctttgccat 426
           | |||||||||
Sbjct: 34  cactttgccat 24



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 82/99 (82%), Gaps = 3/99 (3%)
 Strand = Plus / Minus

                                                                       
Query: 176 gccagcacatgaggtagagatgatcatgggccgatagcagggatcccagggatcaccacc 235
           ||||||||||||  ||| ||||||||||||     ||||||||||||||| | |||||||
Sbjct: 277 gccagcacatgaactagtgatgatcatgggtg---agcagggatcccaggaagcaccacc 221

                                                  
Query: 236 agcgggccggtaatggtgcttgttccggtaccggttccc 274
           | ||||||| || ||||||| || || ||| ||||||||
Sbjct: 220 aacgggccgttagtggtgctggtaccagtaacggttccc 182
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>emb|Z23258.1|SCACCPROA S.cereale acclimation protein mRNA, complete CDS
          Length = 479

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                 
Query: 348 ccttctctttcagctcccgcccgtcgcatgacgcgagcaccaccagtagcagga 401
           ||||||| |||||||||| ||| ||||| || ||||||||||||||||||||||
Sbjct: 54  ccttctcgttcagctccctcccttcgcaggaggcgagcaccaccagtagcagga 1



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                
Query: 213 cagggatcccagggatcaccaccagcgggccggtaatggtgcttgttccggta 265
           |||| |||||||| |||||||||||||||||| ||||||| || |||||||||
Sbjct: 204 caggaatcccaggaatcaccaccagcgggccgttaatggtactggttccggta 152
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>ref|XM_414354.1| PREDICTED: Gallus gallus similar to cadherin EGF LAG seven-pass
            G-type receptor 3; multiple EGF-like domains 2;
            EGF-like-domain, multiple 1; epidermal growth factor-like
            1; cadherin EGF LAG seven-pass G-type receptor 3,
            flamingo (Drosophila) homolog (LOC416011), mRNA
          Length = 12274

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 227  atcaccaccagcgggccggta 247
            |||||||||||||||||||||
Sbjct: 3635 atcaccaccagcgggccggta 3655
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>emb|AL021175.1|CEY6E2A Caenorhabditis elegans YAC Y6E2A, complete sequence
          Length = 22377

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 423   ccattgctcactgagaagttt 443
             |||||||||||||||||||||
Sbjct: 22172 ccattgctcactgagaagttt 22192
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>emb|CR392039.8| Human DNA sequence from clone bP-2171C21 on chromosome 21, complete
              sequence
          Length = 158069

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 216    ggatcccagggatcaccacca 236
              |||||||||||||||||||||
Sbjct: 152949 ggatcccagggatcaccacca 152929
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>gb|AC069302.4| Homo sapiens BAC clone RP11-322J23 from 4, complete sequence
          Length = 178780

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 434    tgagaagttttgatattacta 454
              |||||||||||||||||||||
Sbjct: 136925 tgagaagttttgatattacta 136945
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>ref|NM_074515.3| Caenorhabditis elegans Seven TM Receptor family member (str-38)
           (str-38) mRNA, complete cds
          Length = 1825

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 423 ccattgctcactgagaagttt 443
           |||||||||||||||||||||
Sbjct: 825 ccattgctcactgagaagttt 805
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>gb|AF033703.1|AF033703 Notoacmaea petterdi histone H3 gene, partial cds
          Length = 274

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 385 caccaccagtagcaggagcgc 405
           |||||||||||||||||||||
Sbjct: 65  caccaccagtagcaggagcgc 45
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>gb|AC153530.9| Mus musculus 10 BAC RP23-202A18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 192392

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    catgaggtagagatgatcat 202
              ||||||||||||||||||||
Sbjct: 173220 catgaggtagagatgatcat 173201



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    catgaggtagagatgatcat 202
              ||||||||||||||||||||
Sbjct: 163082 catgaggtagagatgatcat 163063
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>emb|AL591393.10| Human DNA sequence from clone RP11-224J22 on chromosome 9 Contains a
             novel gene (FLJ33868) and 2 CpG islands, complete sequence
          Length = 174911

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   ccccagcagaggcaagtcca 293
             ||||||||||||||||||||
Sbjct: 16334 ccccagcagaggcaagtcca 16353
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>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7
          Length = 349122

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    caccgctggcaccggcaccg 334
              ||||||||||||||||||||
Sbjct: 118088 caccgctggcaccggcaccg 118069
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>emb|BX248356.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
             3/8
          Length = 347625

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 305   tcgccgacgccaccgctggcaccg 328
             |||||| |||||||||||||||||
Sbjct: 84896 tcgccgtcgccaccgctggcaccg 84873
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 305     tcgccgacgccaccgctggcaccg 328
               |||||||||||||||| |||||||
Sbjct: 3131598 tcgccgacgccaccgcgggcaccg 3131621
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>gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complete sequence
          Length = 48498

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 317  ccgctggcaccggcaccgtg 336
            ||||||||||||||||||||
Sbjct: 9273 ccgctggcaccggcaccgtg 9292
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>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence
          Length = 168794

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    ccgctggcaccggcaccgtg 336
              ||||||||||||||||||||
Sbjct: 156788 ccgctggcaccggcaccgtg 156807
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 234     ccagcgggccggtaatggtg 253
               ||||||||||||||||||||
Sbjct: 2825820 ccagcgggccggtaatggtg 2825839
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>dbj|AK132876.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930473F20 product:unclassifiable, full
            insert sequence
          Length = 1666

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 183  catgaggtagagatgatcat 202
            ||||||||||||||||||||
Sbjct: 1171 catgaggtagagatgatcat 1190
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>gb|AC152979.2| Mus musculus 10 BAC RP23-325K4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 183269

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   catgaggtagagatgatcat 202
             ||||||||||||||||||||
Sbjct: 23176 catgaggtagagatgatcat 23157



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   catgaggtagagatgatcat 202
             ||||||||||||||||||||
Sbjct: 13038 catgaggtagagatgatcat 13019
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>gb|AC012519.9|AC012519 Homo sapiens 3 BAC RP11-1036F1 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 184447

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   ggaaataaatacagatgaca 59
            ||||||||||||||||||||
Sbjct: 1413 ggaaataaatacagatgaca 1432
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>emb|CR854904.9| Zebrafish DNA sequence from clone CH211-214F6 in linkage group 10,
             complete sequence
          Length = 116150

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 154   gcgagctttagcttcttgtagcgc 177
             ||||| ||||||||||||||||||
Sbjct: 32931 gcgagttttagcttcttgtagcgc 32908
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 305     tcgccgacgccaccgctggcaccg 328
               |||||||||||||||| |||||||
Sbjct: 3138906 tcgccgacgccaccgcgggcaccg 3138929


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,669,058
Number of Sequences: 3902068
Number of extensions: 3669058
Number of successful extensions: 65461
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65245
Number of HSP's gapped (non-prelim): 213
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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