Clone Information

BLAST Search Result

Clone Name	rbasd17f09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PHYA3_AVESA (P06593) Phytochrome A type 3 (AP3)	134	3e-31
2	PHYA4_AVESA (P06594) Phytochrome A type 4 (AP4)	129	6e-30
3	PHYA1_MAIZE (P19862) Phytochrome A	126	6e-29
4	PHYA_SORBI (P93526) Phytochrome a	120	3e-27
5	PHYA_ORYSA (P10931) Phytochrome A	116	6e-26
6	PHYA_CUCPE (P06592) Phytochrome A	77	6e-14
7	PHYA_SOYBN (P42500) Phytochrome A	76	7e-14
8	PHYA_PETCR (P55141) Phytochrome A	75	1e-13
9	PHYA_SOLTU (P30733) Phytochrome A	75	2e-13
10	PHYA_PEA (P15001) Phytochrome A	75	2e-13
11	PHYA1_TOBAC (P33530) Phytochrome A1	75	2e-13
12	PHYA_ARATH (P14712) Phytochrome A	74	3e-13
13	PHYA_LATSA (P93673) Phytochrome type A	74	5e-13
14	PHY_PICAB (Q40762) Phytochrome	60	4e-09
15	PHY_PINSY (Q41046) Phytochrome	60	7e-09
16	PHYA_POPTM (O49934) Phytochrome A	56	1e-07
17	PHY1_PHYPA (P36505) Phytochrome 1	55	1e-07
18	PHY1_SELMA (Q01549) Phytochrome 1	55	2e-07
19	PHY2_CERPU (Q39557) Phytochrome 2	52	2e-06
20	PHYC_SORBI (P93528) Phytochrome C	50	7e-06
21	PHY_ADICA (P42496) Phytochrome 1	46	1e-04
22	PHYC_ARATH (P14714) Phytochrome C	43	9e-04
23	PHY_MOUSC (P33529) Phytochrome	42	0.001
24	PHYC_ORYSA (Q9ZWI9) Phytochrome C	41	0.003
25	PHYB_TOBAC (P29130) Phytochrome B	39	0.017
26	PHYD_ARATH (P42497) Phytochrome D	37	0.037
27	PHYB_SOYBN (P42499) Phytochrome B	37	0.064
28	PHYB_SOLTU (P34094) Phytochrome B	36	0.083
29	PHYE_ARATH (P42498) Phytochrome E	35	0.14
30	PHYB1_LYCES (Q9ZS62) Phytochrome B1	35	0.19
31	PHYB_ARATH (P14713) Phytochrome B	35	0.24
32	PHYB_SORBI (P93527) Phytochrome B	34	0.41
33	VGLX_PRVRI (P07562) Secreted glycoprotein GX	33	0.92
34	GIDA_RALSO (Q8XU65) tRNA uridine 5-carboxymethylaminomethyl modi...	31	2.7
35	GIDA_BURPS (Q63PG8) tRNA uridine 5-carboxymethylaminomethyl modi...	31	2.7
36	GIDA_BURMA (Q62FS8) tRNA uridine 5-carboxymethylaminomethyl modi...	31	2.7
37	PHYE_IPONI (P55004) Phytochrome E	31	3.5
38	VTS1_USTMA (Q4P965) Protein VTS1	31	3.5
39	EFTU_TOBAC (P68158) Elongation factor Tu, chloroplast precursor ...	31	3.5
40	EFTUA_NICSY (Q40450) Elongation factor TuA, chloroplast precurso...	31	3.5

>PHYA3_AVESA (P06593) Phytochrome A type 3 (AP3)|
          Length = 1128

 Score =  134 bits (336), Expect = 3e-31
 Identities = 70/93 (75%), Positives = 76/93 (81%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            IS++ TKNSIGENLHLIDLELRIKH+GLGVPAELMAQMFEE+N EQSEE           
Sbjct: 1036 ISSKLTKNSIGENLHLIDLELRIKHQGLGVPAELMAQMFEEDNKEQSEEGLSLLVSRNLL 1095

Query: 451  XLMNGDVRHLREAGMSIFILTAELACAPTAMRQ 353
             LMNGDVRHLREAG+S FI+TAELA APTAM Q
Sbjct: 1096 RLMNGDVRHLREAGVSTFIITAELASAPTAMGQ 1128

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>PHYA4_AVESA (P06594) Phytochrome A type 4 (AP4)|
          Length = 1128

 Score =  129 bits (325), Expect = 6e-30
 Identities = 68/93 (73%), Positives = 75/93 (80%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            IS++ TKNSIGENLHLIDLELRIKH+GLGVPAELM QMFEE+N EQS+E           
Sbjct: 1036 ISSKLTKNSIGENLHLIDLELRIKHQGLGVPAELMEQMFEEDNKEQSDEGLGLLVSRKLL 1095

Query: 451  XLMNGDVRHLREAGMSIFILTAELACAPTAMRQ 353
             LMNGDVRHLREAG+S FILTAELA APTA+ Q
Sbjct: 1096 RLMNGDVRHLREAGVSTFILTAELASAPTAIGQ 1128

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>PHYA1_MAIZE (P19862) Phytochrome A|
          Length = 1131

 Score =  126 bits (316), Expect = 6e-29
 Identities = 63/91 (69%), Positives = 73/91 (80%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            IS++ TKNSIGENLHLID ELRIKHRG GVPAE+++QM+EE+N EQSEE           
Sbjct: 1039 ISSKLTKNSIGENLHLIDFELRIKHRGAGVPAEILSQMYEEDNKEQSEEGFSLAVSRNLL 1098

Query: 451  XLMNGDVRHLREAGMSIFILTAELACAPTAM 359
             LMNGD+RHLREAGMS FILTAELA AP+A+
Sbjct: 1099 RLMNGDIRHLREAGMSTFILTAELAAAPSAV 1129

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>PHYA_SORBI (P93526) Phytochrome a|
          Length = 1131

 Score =  120 bits (301), Expect = 3e-27
 Identities = 60/93 (64%), Positives = 73/93 (78%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            IS++ TKNSIGENLHLID ELRIKH+G GVPAE+++QM+EE+N E SEE           
Sbjct: 1039 ISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEPSEEGLSLLVSRNLL 1098

Query: 451  XLMNGDVRHLREAGMSIFILTAELACAPTAMRQ 353
             LMNG++RH+REAGMS FILTAELA AP+A+ Q
Sbjct: 1099 RLMNGNIRHIREAGMSTFILTAELAAAPSAVGQ 1131

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>PHYA_ORYSA (P10931) Phytochrome A|
          Length = 1128

 Score =  116 bits (290), Expect = 6e-26
 Identities = 58/88 (65%), Positives = 68/88 (77%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            IS   TKNSIGENLHLIDLELRIKH+G GVPA+L++QM+E++N EQS+E           
Sbjct: 1039 ISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSRNLL 1098

Query: 451  XLMNGDVRHLREAGMSIFILTAELACAP 368
             LMNGDVRH+REAGMS FIL+ ELA AP
Sbjct: 1099 RLMNGDVRHMREAGMSTFILSVELASAP 1126

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>PHYA_CUCPE (P06592) Phytochrome A|
          Length = 1124

 Score = 76.6 bits (187), Expect = 6e-14
 Identities = 41/87 (47%), Positives = 54/87 (62%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            IS   TKN +G+++HL+ LE RI + G G+P  L+ +MF  E  + SEE           
Sbjct: 1033 ISTDVTKNQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEE-DASEEGFSLLISRKLV 1091

Query: 451  XLMNGDVRHLREAGMSIFILTAELACA 371
             LMNGDVR++REAG S FI+T ELA A
Sbjct: 1092 KLMNGDVRYMREAGKSSFIITVELAAA 1118

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>PHYA_SOYBN (P42500) Phytochrome A|
          Length = 1131

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 43/87 (49%), Positives = 53/87 (60%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            ++   TK  +G+++HL+ LEL I H G GVP  L+ QMF     E SEE           
Sbjct: 1041 VAGSLTKEQLGKSVHLVKLELSITHGGSGVPEVLLNQMFGNNGLE-SEEGISLLIRAKLL 1099

Query: 451  XLMNGDVRHLREAGMSIFILTAELACA 371
             LMNGDVR+LREAG S FIL+AELA A
Sbjct: 1100 KLMNGDVRYLREAGKSAFILSAELAAA 1126

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>PHYA_PETCR (P55141) Phytochrome A|
          Length = 1129

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 41/87 (47%), Positives = 55/87 (63%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            IS   T++++G+++ L+ LE RI H G GVP E ++QMF  + +E SEE           
Sbjct: 1039 ISVTLTEDNLGQSVQLVHLEFRITHTGAGVPEEAVSQMFGSD-SETSEEGISLLISRKLV 1097

Query: 451  XLMNGDVRHLREAGMSIFILTAELACA 371
             LMNGDV +LREAG S FI+T ELA A
Sbjct: 1098 KLMNGDVHYLREAGKSTFIITVELAAA 1124

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>PHYA_SOLTU (P30733) Phytochrome A|
          Length = 1123

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 43/87 (49%), Positives = 56/87 (64%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            IS + TK+ IGE++ L  LE RI+H G GVP EL++QMF  E  + SEE           
Sbjct: 1034 ISGKLTKDRIGESVQLALLEFRIRHTGGGVPEELLSQMFGSE-ADASEEGISLLVSRKLV 1092

Query: 451  XLMNGDVRHLREAGMSIFILTAELACA 371
             LMNG+V++LREAG S FI++ ELA A
Sbjct: 1093 KLMNGEVQYLREAGRSTFIISVELAVA 1119

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>PHYA_PEA (P15001) Phytochrome A|
          Length = 1124

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 42/87 (48%), Positives = 54/87 (62%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            I+A  TK  +G+++HL++LEL I H G GVP   + QMF   N  +SEE           
Sbjct: 1034 IAASLTKEQLGKSVHLVNLELSITHGGSGVPEAALNQMF-GNNVLESEEGISLHISRKLL 1092

Query: 451  XLMNGDVRHLREAGMSIFILTAELACA 371
             LMNGDVR+L+EAG S FIL+ ELA A
Sbjct: 1093 KLMNGDVRYLKEAGKSSFILSVELAAA 1119

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>PHYA1_TOBAC (P33530) Phytochrome A1|
          Length = 1124

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 44/87 (50%), Positives = 55/87 (63%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            IS   TK+ IGE++ L  LE+RI H G GVP EL++QMF  E  E SEE           
Sbjct: 1034 ISGTLTKDRIGESVQLALLEVRISHTGGGVPEELLSQMFGTE-AEASEEGISLLISRKLV 1092

Query: 451  XLMNGDVRHLREAGMSIFILTAELACA 371
             LMNG+V++LREAG S FI++ ELA A
Sbjct: 1093 KLMNGEVQYLREAGRSTFIISVELAVA 1119

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>PHYA_ARATH (P14712) Phytochrome A|
          Length = 1122

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 40/87 (45%), Positives = 55/87 (63%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            +SA   K+ +G ++HL +LE+R+ H G G+P  L+ QMF  E  + SEE           
Sbjct: 1035 VSASLRKDQLGRSVHLANLEIRLTHTGAGIPEFLLNQMFGTEE-DVSEEGLSLMVSRKLV 1093

Query: 451  XLMNGDVRHLREAGMSIFILTAELACA 371
             LMNGDV++LR+AG S FI+TAELA A
Sbjct: 1094 KLMNGDVQYLRQAGKSSFIITAELAAA 1120

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>PHYA_LATSA (P93673) Phytochrome type A|
          Length = 1124

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 41/87 (47%), Positives = 54/87 (62%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            I++  TK  +G+++HL++LEL I H G GVP   + QMF   N  +SEE           
Sbjct: 1034 IASSLTKEQLGKSVHLVNLELSITHGGSGVPEAALNQMF-GNNVLESEEGISLHISRKLL 1092

Query: 451  XLMNGDVRHLREAGMSIFILTAELACA 371
             LMNGDVR+L+EAG S FIL+ ELA A
Sbjct: 1093 KLMNGDVRYLKEAGKSSFILSVELAAA 1119

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>PHY_PICAB (Q40762) Phytochrome|
          Length = 1136

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 32/84 (38%), Positives = 47/84 (55%)
 Frame = -3

Query: 616  TKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXXXLMNG 437
            TK  +G  ++++ +E RI H G G+P EL+ +MF   N +  +E            +MNG
Sbjct: 1051 TKRHLGSGVNVMHMEFRITHSGQGIPEELIKEMF-VHNQDMFQEGLGLYMCQQLVKIMNG 1109

Query: 436  DVRHLREAGMSIFILTAELACAPT 365
            DV++LREAG S FI+  E   A T
Sbjct: 1110 DVQYLREAGRSSFIINVEFPLAQT 1133

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>PHY_PINSY (Q41046) Phytochrome|
          Length = 1131

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 33/88 (37%), Positives = 49/88 (55%)
 Frame = -3

Query: 616  TKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXXXLMNG 437
            T   +G  LH++ LE RI H GLG+PAEL+  +F+      ++E            LMNG
Sbjct: 1042 TLKQLGGGLHVVHLEFRITHPGLGLPAELVQDLFDRSQW-ATQEGVGLSMCRKLLKLMNG 1100

Query: 436  DVRHLREAGMSIFILTAELACAPTAMRQ 353
            DVR++RE+G+  F++  E    P A R+
Sbjct: 1101 DVRYIRESGICYFLVNVEF---PMAQRE 1125

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>PHYA_POPTM (O49934) Phytochrome A|
          Length = 1125

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLI--DLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXX 458
            +SA   +  +G  L ++    +LRI+H G G+P  L+ QM+ E+ T  S E         
Sbjct: 1031 VSASFFQRPVGAILFILVHSGKLRIRHLGAGIPEALVDQMYGED-TGASVEGISLVISRK 1089

Query: 457  XXXLMNGDVRHLREAGMSIFILTAELA 377
               LMNGDVR++REAG S FI++ ELA
Sbjct: 1090 LVKLMNGDVRYMREAGKSSFIISVELA 1116

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>PHY1_PHYPA (P36505) Phytochrome 1|
          Length = 1132

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 32/101 (31%), Positives = 52/101 (51%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            I    T+  +G ++H++ LE R+ H G G+P EL+ +M+ +     ++E           
Sbjct: 1029 IKVVPTRKRLGGSVHVVHLEFRVSHPGAGLPEELVLEMY-DRGKGMTQEGLGLNMCRKLV 1087

Query: 451  XLMNGDVRHLREAGMSIFILTAELACAPTAMRQ**RSKCNT 329
             LMNGDV ++REA    F++  EL   P A R    S+C +
Sbjct: 1088 RLMNGDVHYVREAMQCYFVVNVEL---PMAQRDDASSQCRS 1125

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>PHY1_SELMA (Q01549) Phytochrome 1|
          Length = 1134

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 29/87 (33%), Positives = 49/87 (56%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            I    ++  +G  +H++ LE RI H G+G+P EL+ +MF +     ++E           
Sbjct: 1035 IKVATSRKRLGGVVHVMHLEFRITHPGVGLPEELVQEMF-DRGRGMTQEGLGLSMCRKLV 1093

Query: 451  XLMNGDVRHLREAGMSIFILTAELACA 371
             LMNG+V ++REAG + F+++ EL  A
Sbjct: 1094 KLMNGEVEYIREAGKNYFLVSLELPLA 1120

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>PHY2_CERPU (Q39557) Phytochrome 2|
          Length = 1121

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 28/87 (32%), Positives = 46/87 (52%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            I    T+  +G N+H++ LE R+ H G G+P EL+ +M++      ++E           
Sbjct: 1027 IKVVPTRKRLGGNVHVMHLEFRVSHPGGGLPDELVLEMYDRAK-GMTQEGLGLNMCRKLV 1085

Query: 451  XLMNGDVRHLREAGMSIFILTAELACA 371
             LMNGDV+++RE     F++  EL  A
Sbjct: 1086 RLMNGDVQYVRENAQCYFVVYVELPMA 1112

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>PHYC_SORBI (P93528) Phytochrome C|
          Length = 1135

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 34/95 (35%), Positives = 46/95 (48%)
 Frame = -3

Query: 613  KNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXXXLMNGD 434
            K +IG  + +  LE RI H   GVP  L+ +MF   N E S E             M+G 
Sbjct: 1042 KENIGSGMQIAHLEFRIVHPAPGVPEALIQEMF-RHNPEVSREGLGLYICQKLVKTMSGT 1100

Query: 433  VRHLREAGMSIFILTAELACAPTAMRQ**RSKCNT 329
            V++LREA  S FI+  E   A  + +   RSK +T
Sbjct: 1101 VQYLREADTSSFIILIEFPVAQLSSK---RSKPST 1132

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>PHY_ADICA (P42496) Phytochrome 1|
          Length = 1118

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 42/87 (48%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            I    TK  + + +HL+  E RI H G G+   L+ +M   ++ + + E           
Sbjct: 1024 IKVSRTKTRLDDGVHLMHFEFRISHSGQGISEALVEEM-TNKSQKWTPEGLAISISCTLI 1082

Query: 451  XLMNGDVRHLREAGMSIFILTAELACA 371
             LMNGDV++  +AG   F++T +   A
Sbjct: 1083 RLMNGDVKYTTDAGNKCFLVTIQFPLA 1109

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>PHYC_ARATH (P14714) Phytochrome C|
          Length = 1111

 Score = 42.7 bits (99), Expect = 9e-04
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = -3

Query: 607  SIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXXXLM-NGDV 431
            +IG+ +  ++LE RI H   G+P +L+ +MF+      S E            LM  G +
Sbjct: 1032 AIGKRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLMERGTL 1091

Query: 430  RHLREAGMSIFILTAE 383
            R+LRE+ MS F++  E
Sbjct: 1092 RYLRESEMSAFVILTE 1107

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>PHY_MOUSC (P33529) Phytochrome|
          Length = 1124

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTE-QSEEXXXXXXXXXX 455
            I  +     +   + + +++ R+ H G G+P +L+ QMF+  +   +S+E          
Sbjct: 1028 IKVEPVVKKLPGGVSVANVDFRVSHPGEGLPEDLIDQMFDRADARVKSQEGLGLSICRKL 1087

Query: 454  XXLMNGDVRHLREAGMSIFILTAELACA 371
              LMNG+V++ RE   + F+L  EL  A
Sbjct: 1088 VRLMNGEVQYRREGERNFFLLQLELPLA 1115

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>PHYC_ORYSA (Q9ZWI9) Phytochrome C|
          Length = 1137

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 25/85 (29%), Positives = 40/85 (47%)
 Frame = -3

Query: 607  SIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXXXLMNGDVR 428
            +IG  + +  LE R+ H   GVP  L+ +MF   +   S E             M+G V+
Sbjct: 1046 NIGSGMQIAHLEFRLVHPAPGVPEALIQEMF-RHSPGASREGLGLYISQKLVKTMSGTVQ 1104

Query: 427  HLREAGMSIFILTAELACAPTAMRQ 353
            +LRE+  S FI+  E   A  + ++
Sbjct: 1105 YLRESESSSFIVLVEFPVAQLSTKR 1129

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>PHYB_TOBAC (P29130) Phytochrome B|
          Length = 1132

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 23/84 (27%), Positives = 40/84 (47%)
 Frame = -3

Query: 631  ISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXX 452
            I  Q     I + + ++ +E RI   G G+P EL+  MF       ++E           
Sbjct: 1039 IQLQPNMKQISDEVTVVHIEFRIVCPGEGLPPELVQDMFHSSRWV-TKEGLGLSMCRKIL 1097

Query: 451  XLMNGDVRHLREAGMSIFILTAEL 380
             LMNGD++++RE+    F++  +L
Sbjct: 1098 KLMNGDIQYIRESERCYFLIILDL 1121

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>PHYD_ARATH (P42497) Phytochrome D|
          Length = 1164

 Score = 37.4 bits (85), Expect = 0.037
 Identities = 25/79 (31%), Positives = 35/79 (44%)
 Frame = -3

Query: 616  TKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXXXLMNG 437
            T N + +    + LE R+   G GVP E +  MF       S E            LMNG
Sbjct: 1076 TLNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHSSRWT-SPEGLGLSVCRKILKLMNG 1134

Query: 436  DVRHLREAGMSIFILTAEL 380
             V+++RE   S F++  EL
Sbjct: 1135 GVQYIREFERSYFLIVIEL 1153

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>PHYB_SOYBN (P42499) Phytochrome B|
          Length = 1156

 Score = 36.6 bits (83), Expect = 0.064
 Identities = 24/75 (32%), Positives = 36/75 (48%)
 Frame = -3

Query: 604  IGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXXXLMNGDVRH 425
            I + L L+  E R+   G G+P EL+  MF       ++E            LMNG+V++
Sbjct: 1073 ISDGLTLLHAEFRMVCPGEGLPPELIQDMFNNSRWG-TQEGLGLSMSRKILKLMNGEVQY 1131

Query: 424  LREAGMSIFILTAEL 380
            +REA    F +  EL
Sbjct: 1132 IREAERCYFYVLLEL 1146

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>PHYB_SOLTU (P34094) Phytochrome B|
          Length = 1130

 Score = 36.2 bits (82), Expect = 0.083
 Identities = 21/75 (28%), Positives = 39/75 (52%)
 Frame = -3

Query: 604  IGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXXXLMNGDVRH 425
            I + + ++ +ELRI   G G+P EL+  MF       ++E            LMNG++++
Sbjct: 1046 ISDGVTVVHIELRIICPGEGLPPELVQDMFHSSRW-VTQEGLGLSMCRKMLKLMNGEIQY 1104

Query: 424  LREAGMSIFILTAEL 380
            +RE+    F++  +L
Sbjct: 1105 IRESERCYFLIILDL 1119

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>PHYE_ARATH (P42498) Phytochrome E|
          Length = 1112

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -3

Query: 598  ENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXXXLMNGDVRHLR 419
            +N   I L+ R+ H G G+P+E+++ MFE  +   + +             MNG V ++R
Sbjct: 1022 DNGRYIHLQFRMIHPGKGLPSEMLSDMFETRDGWVTPDGLGLKLSRKLLEQMNGRVSYVR 1081

Query: 418  E 416
            E
Sbjct: 1082 E 1082

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>PHYB1_LYCES (Q9ZS62) Phytochrome B1|
          Length = 1131

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 21/75 (28%), Positives = 38/75 (50%)
 Frame = -3

Query: 604  IGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXXXLMNGDVRH 425
            I +   ++ +ELRI   G G+P EL+  MF       ++E            LMNG++++
Sbjct: 1047 ISDGATVVHIELRIICPGEGLPPELVQDMFHSSRW-VTQEGLGLSMCRKMLKLMNGEIQY 1105

Query: 424  LREAGMSIFILTAEL 380
            +RE+    F++  +L
Sbjct: 1106 IRESERCYFMIILDL 1120

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>PHYB_ARATH (P14713) Phytochrome B|
          Length = 1172

 Score = 34.7 bits (78), Expect = 0.24
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = -3

Query: 583  IDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXXXLMNGDVRHLREAGMS 404
            I  E R+   G G+P EL+  MF       S E            LMNG+V+++RE+  S
Sbjct: 1083 IRTEFRMACPGEGLPPELVRDMFHSSRWT-SPEGLGLSVCRKILKLMNGEVQYIRESERS 1141

Query: 403  IFILTAEL 380
             F++  EL
Sbjct: 1142 YFLIILEL 1149

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>PHYB_SORBI (P93527) Phytochrome B|
          Length = 1178

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = -3

Query: 607  SIGENLHLIDLEL---RIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXXXLMNG 437
            ++ +N    D EL   R  + G G+PA+++  MF       ++E            LM G
Sbjct: 1089 NVKQNSDGTDTELFIFRFTYPGEGLPADIVQDMFSNSQWS-TQEGVGLSTCRKILKLMGG 1147

Query: 436  DVRHLREAGMSIFILTAEL 380
            +V+++RE+  S F++  EL
Sbjct: 1148 EVQYIRESERSFFLIVLEL 1166

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>VGLX_PRVRI (P07562) Secreted glycoprotein GX|
          Length = 498

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
 Frame = +2

Query: 92  HSRTDEKNTTTHHKYVTKPCHTTFLYPR-LITDPTGQP-LLLPFC--------IHLTLYH 241
           H R D++    HH+   +P   TF+ P  +   PTG P LLL F         +HLT   
Sbjct: 356 HHRADDRGPQRHHRLPPEP---TFVSPSDIFVTPTGSPALLLGFLGSALASRPLHLTAGE 412

Query: 242 SLLQPRRIFPASHHRRSL 295
           +    R     S H RSL
Sbjct: 413 TAQHVREAQQKSRHIRSL 430

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>GIDA_RALSO (Q8XU65) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 647

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 128 HKYVTKPCHTTFLYPRLITD----PTGQPLLLPFCIHLTLYHSL 247
           H++ +K  H  FL P  +T     P G    LPF + L L HS+
Sbjct: 286 HRFASKDSHQIFLEPEGLTTNEFYPNGVSTSLPFDVQLDLIHSM 329

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>GIDA_BURPS (Q63PG8) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 657

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 128 HKYVTKPCHTTFLYPRLITD----PTGQPLLLPFCIHLTLYHSL 247
           H++ +K  H  FL P  +T     P G    LPF + L L HS+
Sbjct: 286 HRFASKDSHQIFLEPEGLTTNEFYPNGISTSLPFDVQLALVHSM 329

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>GIDA_BURMA (Q62FS8) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 657

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 128 HKYVTKPCHTTFLYPRLITD----PTGQPLLLPFCIHLTLYHSL 247
           H++ +K  H  FL P  +T     P G    LPF + L L HS+
Sbjct: 286 HRFASKDSHQIFLEPEGLTTNEFYPNGISTSLPFDVQLALVHSM 329

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>PHYE_IPONI (P55004) Phytochrome E|
          Length = 1115

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = -3

Query: 583  IDLELRIKHRGLGVPAELMAQMFEEENTEQSEEXXXXXXXXXXXXLMNGDVRHLREAGMS 404
            I ++ R+ H G G+P+ L+  M        ++E            +MNG V ++RE    
Sbjct: 1031 IHIQFRMTHPGQGLPSALIEDMVRGGTRWTTQEGVVLHLSQKLVRMMNGHVHYVREQQKC 1090

Query: 403  IFIL 392
             F++
Sbjct: 1091 YFLI 1094

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>VTS1_USTMA (Q4P965) Protein VTS1|
          Length = 728

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 458 PVEAHERRCSSPKGSRYVNLHPHRRTCLCSNGNEAVMKKQVQH 330
           P  A   R SSP G R + ++PH R  L    +   M +  QH
Sbjct: 13  PSNASINRASSPSGHRPITMNPHSRYSLGKGASTEHMMRLAQH 55

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>EFTU_TOBAC (P68158) Elongation factor Tu, chloroplast precursor (EF-Tu)|
          Length = 478

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 187 SYRPTFASSFLHSLNTLPQPAATASHLPRKSSPSFAHGSFEMK 315
           S+ P  ++ FLHS  T   P++TA+H  R+ +   A G FE K
Sbjct: 39  SFTPNCSTLFLHSPAT---PSSTATHRHRRFTVRAARGKFERK 78

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>EFTUA_NICSY (Q40450) Elongation factor TuA, chloroplast precursor (EF-TuA)|
          Length = 478

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 187 SYRPTFASSFLHSLNTLPQPAATASHLPRKSSPSFAHGSFEMK 315
           S+ P  ++ FLHS  T   P++TA+H  R+ +   A G FE K
Sbjct: 39  SFTPNCSTLFLHSPAT---PSSTATHRHRRFTVRAARGKFERK 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,934,642
Number of Sequences: 219361
Number of extensions: 1662247
Number of successful extensions: 3904
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 3764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3884
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result