>MCH1_GIBZE (Q4IM48) Probable transporter MCH1|
          Length = 572

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/92 (23%), Positives = 38/92 (41%)
 Frame = +3

Query: 87  GDMHPPTTAGYQISTKTSVHISYIFSQETQNLQVLIHSLCAAIKPYKPIPRMLDSTFTRA 266
           G + PP   G+   T  + H+S IF       ++ I +L   + PY     +   +   A
Sbjct: 356 GTLTPPEMEGWSHRTSAATHVS-IFGITNTASRIFIGTLTDLLAPYPHTQHVQGPSTRSA 414

Query: 267 IHGRWFASLVGGVSNFDDFKSAAMRFMARQLV 362
           +  R+  S V  ++ F    S  +  +A  LV
Sbjct: 415 VSSRFSISRVAFMAFFASMLSIGLLILASGLV 446

>NCAP_DUGBV (P15190) Nucleocapsid protein (Nucleoprotein)|
          Length = 441

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 467 KRIVSLFGAADSWLKQLGVRHHDFNYFVTHPM*TVY*LPG 348
           +++VS   AA  W K +G   + F   +THP+   Y +PG
Sbjct: 121 EQLVSYQQAAQKWRKDVGYEINQFTRSLTHPVVAEYKVPG 160

>K1267_MOUSE (Q80TG1) Protein KIAA1267|
          Length = 1036

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 45  HPGHTTSIG*LSTHGDMHPPTTAGYQISTKTS 140
           HP H+  +  LST  D   PT++G Q++  TS
Sbjct: 748 HPPHSPLVRQLSTSSDTSTPTSSGSQVAASTS 779

>OMPA_BUCAP (Q8K9L4) OmpA-like protein precursor|
          Length = 347

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 363 YSSHGVSDEVVEVMVPDSKLLKPGVCCAEEGDDPLMISC 479
           ++SHG+S + + +    ++       C +  D PL+ISC
Sbjct: 295 FTSHGISQDKISIQGMGNEFSLTNQICKDVSDRPLLISC 333

>JIP1_RAT (Q9R237) C-jun-amino-terminal kinase-interacting protein 1|
           (JNK-interacting protein 1) (JIP-1) (JNK MAP kinase
           scaffold protein 1) (Islet-brain-1) (IB-1)
           (Mitogen-activated protein kinase 8-interacting protein
           1) (JIP-1-related protein) (JRP)
          Length = 708

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 387 EVVEVMVPDSKLLKPGVCCAEEGDDPLMISCPGVGPQRA 503
           E++++ + D+    PG    EE DD L    PGVGP +A
Sbjct: 90  EMLQMDLIDAASDTPGAEDDEEDDDELAAQRPGVGPSKA 128

>IGHD_RAT (P01883) Ig delta chain C region (Fragment)|
          Length = 202

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 124 LVPKLLCTLVTSSAKKHKTFKS*YIRYVLQSSRIN 228
           L P L CT+  +S KK KTFK    R    S + N
Sbjct: 17  LSPNLTCTITNTSKKKSKTFKLPETRNSQSSKKAN 51

>CAN7_MOUSE (Q9R1S8) Calpain-7 (EC 3.4.22.-) (PalB homolog) (PalBH)|
          Length = 813

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 147 ISYIFSQETQNLQVLIHSLCAAIKPYKPIPRMLDSTFTRAIHGRWFASLVGGVSNFDD 320
           +S    Q T +  V ++S C+      P P     T ++ I+G+W     GG  NF +
Sbjct: 656 VSQYEKQNTIHYTVRVYSACSFTFSKIPSPY----TLSKRINGKWSGQSAGGCGNFQE 709

>CAN7_HUMAN (Q9Y6W3) Calpain-7 (EC 3.4.22.-) (PalB homolog) (PalBH)|
          Length = 813

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 147 ISYIFSQETQNLQVLIHSLCAAIKPYKPIPRMLDSTFTRAIHGRWFASLVGGVSNFDD 320
           +S    Q T +  V ++S C+      P P     T ++ I+G+W     GG  NF +
Sbjct: 656 VSQYEKQNTIHYTVRVYSACSFTFSKIPSPY----TLSKRINGKWSGQSAGGCGNFQE 709

>MUTL_NEIMB (Q9JYT2) DNA mismatch repair protein mutL|
          Length = 658

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 328 DLKSSKLLTPPTRDANHLPCIALVKVESNIRGIGL 224
           +L+S +LL P T  A+H  C AL      + G GL
Sbjct: 513 NLQSQRLLIPVTFAASHEECAALADYAETLAGFGL 547


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,551,405
Number of Sequences: 219361
Number of extensions: 1508433
Number of successful extensions: 3469
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3469
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)