>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response|
           factor 2) (ERF-2)
          Length = 492

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 137 TTSTERAKSTAITCCPGAAASAAHLLGTSATGRTSAHELLS-ALPTLITTTWSSAGTFHA 313
           + S     S A TCC  AAA+AA L GT       A +LL+   P    ++ S A    A
Sbjct: 308 SASAASTPSGAPTCCASAAAAAALLYGTG-----GAEDLLAPGAPCAACSSASCANNAFA 362

Query: 314 SFPSLASLAT 343
             P L+SL T
Sbjct: 363 FGPELSSLIT 372

>MIB1_BRARE (Q804S5) Ubiquitin ligase protein mib (EC 6.3.2.-) (Mind bomb|
            protein)
          Length = 1030

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
 Frame = +2

Query: 14   TEQRHCIPCMRESTAPHTLQKGCIHIKACTTHA*AMHGCI*TTSTERAKSTAITCCPGA- 190
            T+   C+ C  +  A   L + C H+ AC   A  M  C+   +    ++  + CC G  
Sbjct: 859  TKIEECVVCSDKKAA--VLFQPCGHMCACENCASLMKKCVQCRAVVERRTPFVLCCGGKG 916

Query: 191  ---AASAAHLLGTSATGRTSAHELLSALPTLITTTWSS 295
               A     L G S +    + +LL   P  +  +WSS
Sbjct: 917  MEDATDDEDLTGGSNSMAGGSQDLLQ--PNNLALSWSS 952

>YAJR_ECOLI (P77726) Inner membrane transport protein yajR|
          Length = 454

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 308 HASFPSLASLATTGVAFM*NM*RTIWIIPN 397
           HA F  +A LATTG+A       TIW++PN
Sbjct: 165 HALFWMIAILATTGIAL------TIWVVPN 188

>MUC5A_HUMAN (P98088) Mucin-5AC (Mucin 5 subtype AC, tracheobronchial)|
           (Tracheobronchial mucin) (TBM) (Major airway
           glycoprotein) (Fragment)
          Length = 1233

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +2

Query: 137 TTSTERAKSTAITCCPGAAASAAHLLGTSATGRTSAHE----LLSALPTLITTTWSSAGT 304
           TTST  A +T+ T  PG   S      T++   TS         S +PT  TT  S   T
Sbjct: 129 TTSTTSAPTTSTTSGPGTTPSPVPTTSTTSAPTTSTTSGPGTTPSPVPTTSTTPVSKTST 188

Query: 305 FHAS 316
            H S
Sbjct: 189 SHLS 192

>MIB1_MOUSE (Q80SY4) Ubiquitin ligase protein MIB1 (EC 6.3.2.-) (Mind bomb|
            homolog 1) (DAPK-interacting protein 1) (DIP-1)
          Length = 1006

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +2

Query: 14   TEQRHCIPCMRESTAPHTLQKGCIHIKACTTHA*AMHGCI*TTSTERAKSTAITCCPGAA 193
            T+   C+ C  +  A   L + C H+ AC   A  M  C+   +    +   ITCC G +
Sbjct: 861  TKIEECVVCSDKKAA--VLFQPCGHMCACENCASLMKKCVQCRAVVERRVPFITCCGGKS 918

Query: 194  A 196
            +
Sbjct: 919  S 919

>PRY3_YEAST (P47033) Protein PRY3 (Pathogen related in Sc 3)|
          Length = 881

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = +2

Query: 137 TTSTERAKSTAITCCPGAAASAAHLLGTSATGRTSAHELLSALPTLITTTWSSAGTFHAS 316
           TT+ E + +T IT    A   +   L T+A   T A   ++  PTL  T  S++ T +A 
Sbjct: 542 TTTLENSSTTTIT----AITKSTTTLATTANNSTRAATAVTIDPTLDPTDNSASPTDNAK 597

Query: 317 FPSLASLATTGVA 355
             S    ++TG +
Sbjct: 598 HTSTYGSSSTGAS 610

>ASPM_FELCA (P62288) Abnormal spindle-like microcephaly-associated protein|
            homolog (Fragment)
          Length = 3461

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 16/62 (25%), Positives = 33/62 (53%)
 Frame = +2

Query: 467  TALRVSVREREKGMYSTLLVLITRPMMLRGATKTQTEKPTQIHPSDTTRVSPWKAKRVRR 646
            +A R++  +++  ++ T  ++I + +    A K Q  + T++  +     S WK K VRR
Sbjct: 1907 SAFRMAQTQKQFRLFKTAALVIQQHLRAWSAGKKQRMEYTELRNAALMLQSTWKGKIVRR 1966

Query: 647  KI 652
            +I
Sbjct: 1967 QI 1968


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,374,831
Number of Sequences: 219361
Number of extensions: 1492355
Number of successful extensions: 6470
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6449
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)