ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16o08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1G13B_DICDI (P34116) Cell surface glycoprotein gp138B precursor 33 0.72
2G3ST2_HUMAN (Q9H3Q3) Galactose-3-O-sulfotransferase 2 (EC 2.8.2.... 30 4.6
3G3ST2_PIG (Q6XQG9) Galactose 3-O-sulfotransferase 2 (EC 2.8.2.-)... 30 7.9

>G13B_DICDI (P34116) Cell surface glycoprotein gp138B precursor|
          Length = 734

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 270 SHVQENFL*LSQNQVLRSSGSCKLSQGGNHAGSCALPEHLL 392
           S+ + N+L L+ NQ+  ++ SC L  GGN  G   LP  LL
Sbjct: 377 SYCRINYLGLNYNQLNGTAPSCILCLGGNRGGDIVLPNPLL 417



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>G3ST2_HUMAN (Q9H3Q3) Galactose-3-O-sulfotransferase 2 (EC 2.8.2.-) (Gal3ST-2)|
           (Galbeta1-3GalNAc 3'-sulfotransferase 2)
           (Beta-galactose-3-O-sulfotransferase 2) (Glycoprotein
           beta-Gal 3'-sulfotransferase 2)
          Length = 398

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 93  GIARLPTATSVVFMVVFIAASSFHPSTFHHLAEEQILSICLPCMDLIHAGH 245
           G A  P  T+++F+     ASS   +  +  AE   LS+ LP    +H G+
Sbjct: 44  GQAEGPPVTNIMFLKTHKTASSTVLNILYRFAETHNLSVALPAGSRVHLGY 94



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>G3ST2_PIG (Q6XQG9) Galactose 3-O-sulfotransferase 2 (EC 2.8.2.-) (Gal3ST-2)|
           (Galbeta1-3GalNAc 3'-sulfotransferase 2)
           (Beta-galactose-3-O-sulfotransferase 2)
          Length = 398

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 84  LRHGIARLPTATSVVFMVVFIAASSFHPSTFHHLAEEQILSICLPCMDLIHAGH 245
           L  G A  P  T+V+F+     ASS   +     AE   LS+ LP    +H G+
Sbjct: 39  LLKGQAEGPPITNVMFLKTHKTASSTVLNILFRFAETHNLSVALPAGQRVHLGY 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,938,470
Number of Sequences: 219361
Number of extensions: 1922294
Number of successful extensions: 4502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4500
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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