>AIG1_ARATH (P54120) Protein AIG1|
          Length = 353

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
 Frame = -1

Query: 645 LCKNRVVLFDNKTKDPRIQAKQLETLLDVVDSVSANNGGNPFTDQMLTRLKEV---HDRE 475
           LC  R++LFDNKTKD   + KQ+  LL ++D V   N   P+TD+M   +KE    H +E
Sbjct: 198 LCGQRMILFDNKTKDDEKKTKQVHELLKLIDLVRKQNNNIPYTDEMYHMIKEENERHKKE 257

Query: 474 MEVHDAMGYSEDQITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQVQLMEEQ 310
            E  ++ G+SE+Q+  L KE+    +  L  +  M+E+ + I +E  Q +L E++
Sbjct: 258 QEELESKGHSEEQLAALMKELQIMNERNLKAMAEMMEKNMKIAME-AQEKLFEQR 311

>YJE9_YEAST (P47048) Hypothetical 52.8 kDa protein in MTR4-GYP6 intergenic|
           region
          Length = 450

 Score = 36.2 bits (82), Expect = 0.085
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
 Frame = -1

Query: 636 NRVVLFDNKTKDPRIQ-------AKQLETLLD---VVDSVSANNGGNPFTDQMLTRLKEV 487
           +R++ F N     R Q       A  ++TL +   V+ S++   G     + +L  +KE 
Sbjct: 294 SRLLKFQNNLAQVRTQIDTSATNAVLIQTLSESNEVIKSINGYIGSTEKVEDLLDEIKEG 353

Query: 486 HDREMEVHDAMG-YSEDQITELKKEIHRTRDE 394
           HDR  EV+D +  Y++ Q  E ++EI R  ++
Sbjct: 354 HDRTEEVNDLLAHYNKGQDEEAEEEIERELEQ 385

>GIMA4_RAT (Q8K3K9) GTPase, IMAP family member 4 (Immunity-associated protein|
           4) (Immunity-associated nucleotide 1 protein)
          Length = 310

 Score = 36.2 bits (82), Expect = 0.085
 Identities = 30/110 (27%), Positives = 49/110 (44%)
 Frame = -1

Query: 639 KNRVVLFDNKTKDPRIQAKQLETLLDVVDSVSANNGGNPFTDQMLTRLKEVHDREMEVHD 460
           +NR  LF+NK      Q +Q   LL +V S+   NGG  FT++M    + V  ++     
Sbjct: 183 RNRYCLFNNKASGAE-QEEQKRQLLTLVQSMVRENGGKYFTNKMYESAEGVIQKQ----- 236

Query: 459 AMGYSEDQITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQVQLMEEQ 310
                    T  KKE +R   E+L    A +  +    ++ L+ +L  E+
Sbjct: 237 ---------TWKKKEFYR---EELERERARIRREYEAEIQDLRDELERER 274

>GOGA1_HUMAN (Q92805) Golgin subfamily A member 1 (Golgin-97)|
          Length = 767

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 21/66 (31%), Positives = 37/66 (56%)
 Frame = -1

Query: 507 LTRLKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQV 328
           L +LKE   +   V  AM  + +++ + ++E      +Q AN+TA+++EK     EK +V
Sbjct: 465 LKKLKEEWSQREIVSVAMAQALEEVRKQREEFQ----QQAANLTAIIDEKEQNLREKTEV 520

Query: 327 QLMEEQ 310
            L +EQ
Sbjct: 521 LLQKEQ 526

>SMC2_XENLA (P50533) Structural maintenance of chromosome 2|
           (Chromosome-associated protein E) (Chromosome assembly
           protein XCAP-E)
          Length = 1203

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = -1

Query: 498 LKEVHDREMEVHDAMGYSEDQITELKKEI---HRTRDEQLANITAMVEEKLN 352
           LKE+ D  +++ D M  +E ++ EL KEI    + RD+++      +EE L+
Sbjct: 253 LKEMQDSILKLQDTMAENERKVKELGKEIAELEKMRDQEVGGALRSLEEALS 304

>Y2597_MYCBO (P59974) Hypothetical protein Mb2597|
          Length = 884

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = -1

Query: 630  VVLFDNKTKDPRIQAKQLETL-LDVVDSVSANNGGNP--FTDQMLTRLKEVHDREMEVHD 460
            ++LFD   ++PR    QLE L  D+ D   ++    P    D+M TRL+  H  E+E   
Sbjct: 776  LMLFD--AQNPRSLVYQLERLRADLKDLPGSSGSSRPERMVDEMNTRLRRSHPEELEEVS 833

Query: 459  AMGYSEDQITELKKEIHRTRDEQLANITA 373
            A G    ++ EL   IH +  +    +TA
Sbjct: 834  ADGL-RAELAELLAGIHASLRDVADVLTA 861

>Y2567_MYCTU (Q50654) Hypothetical protein Rv2567/MT2643|
          Length = 884

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = -1

Query: 630  VVLFDNKTKDPRIQAKQLETL-LDVVDSVSANNGGNP--FTDQMLTRLKEVHDREMEVHD 460
            ++LFD   ++PR    QLE L  D+ D   ++    P    D+M TRL+  H  E+E   
Sbjct: 776  LMLFD--AQNPRSLVYQLERLRADLKDLPGSSGSSRPERMVDEMNTRLRRSHPEELEEVS 833

Query: 459  AMGYSEDQITELKKEIHRTRDEQLANITA 373
            A G    ++ EL   IH +  +    +TA
Sbjct: 834  ADGL-RAELAELLAGIHASLRDVADVLTA 861

>EP15_HUMAN (P42566) Epidermal growth factor receptor substrate 15 (Protein|
            Eps15) (AF-1p protein)
          Length = 896

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -1

Query: 528  NPFTDQMLTRLKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQLANITAMVEEKLNI 349
            +PFT    T  KE          A    ED I   K+E  R  +++LA +    +E L +
Sbjct: 825  DPFTSATTTTNKEADPSNFANFSAYPSEEDMIEWAKRESEREEEQRLARLNQQEQEDLEL 884

Query: 348  TVEKLQVQLME 316
             +   + ++ E
Sbjct: 885  AIALSKSEISE 895

>MYSP_SARSC (Q9BMM8) Paramyosin|
          Length = 876

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = -1

Query: 498 LKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQLANITAMVE---EKLNITVEKLQV 328
           +KEVH+ +M++ +A    +    +L+   HR  +E+     A +E     L + +E L+V
Sbjct: 212 IKEVHEHKMQLDNANHLKQQLAQQLEDTKHRLEEEERKR--ASLENHAHTLEVELESLKV 269

Query: 327 QLMEE 313
           QL EE
Sbjct: 270 QLDEE 274

>SLYA_SALTI (P61091) Transcriptional regulator slyA|
          Length = 144

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = -1

Query: 447 SEDQITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQVQLME 316
           +E  I E+++ IH+TR E LA I++   E L   V KL+  +ME
Sbjct: 96  AEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLVAKLEHNIME 139

>SLYA_SALCH (P61090) Transcriptional regulator slyA|
          Length = 144

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = -1

Query: 447 SEDQITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQVQLME 316
           +E  I E+++ IH+TR E LA I++   E L   V KL+  +ME
Sbjct: 96  AEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLVAKLEHNIME 139

>FDHE_HAEIN (P44452) Protein fdhE homolog|
          Length = 302

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/85 (21%), Positives = 39/85 (45%)
 Frame = -1

Query: 564 DVVDSVSANNGGNPFTDQMLTRLKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQLA 385
           D+V+S  +    NP   Q L +L  +     +         + +TE+  EI    +EQ+A
Sbjct: 57  DIVESQLSTLEKNPLPPQQLEQLNTIEPLNAKTFKRNSIWREYLTEILDEIKPKANEQIA 116

Query: 384 NITAMVEEKLNITVEKLQVQLMEEQ 310
                +E+  +  +E++  +L+ ++
Sbjct: 117 ATIEFLEKASSAELEEMANKLLAQE 141

>NIN_HUMAN (Q8N4C6) Ninein (hNinein)|
          Length = 2090

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 17/65 (26%), Positives = 37/65 (56%)
 Frame = -1

Query: 507 LTRLKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQV 328
           LT+ +   +RE E   +  ++E+++  L +E+ +   EQL ++     EK  +  E+L+ 
Sbjct: 731 LTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLV----EKHTLEKEELRK 786

Query: 327 QLMEE 313
           +L+E+
Sbjct: 787 ELLEK 791

>LETM1_RAT (Q5XIN6) Leucine zipper-EF-hand containing transmembrane protein 1,|
           mitochondrial precursor
          Length = 739

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -1

Query: 516 DQMLTRLKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQ 391
           +Q  +  KE  + E+   D   YSED + E+KKE+ +T DE+
Sbjct: 556 EQKKSLTKEKEELELLKEDVQDYSED-LQEIKKELSKTGDEK 596

>SMC_METJA (Q59037) Chromosome partition protein smc homolog|
          Length = 1169

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 17/59 (28%), Positives = 34/59 (57%)
 Frame = -1

Query: 498 LKEVHDREMEVHDAMGYSEDQITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQVQL 322
           +K + + EME+ D +  +++++  LKKE++    + L N      EK N  ++KL+ +L
Sbjct: 386 IKHLKESEMEIADEIAKNQNELYRLKKELNDL--DNLINRKNFEIEKNNEMIKKLKEEL 442

>RCN1_MOUSE (Q05186) Reticulocalbin-1 precursor|
          Length = 325

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = -1

Query: 618 DNKTKDPRIQAKQLETLLDVVDSVSANNGGNPFTDQMLTRLKEVHDREMEVHDAMGYSED 439
           D+KT D     +  E L  +VD + ++  G   T+++   +K V  R         Y  D
Sbjct: 62  DSKTFDQLSPDESKERLGKIVDRIDSDGDGLVTTEELKLWIKRVQKR---------YIYD 112

Query: 438 QITELKKEIHRTRDEQLA 385
            + ++ K+  R +DE+++
Sbjct: 113 NVAKVWKDYDRDKDEKIS 130

>RPN5_YEAST (Q12250) 26S proteasome regulatory subunit RPN5 (Proteasome|
           non-ATPase subunit 5)
          Length = 445

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 19/103 (18%), Positives = 46/103 (44%)
 Frame = -1

Query: 636 NRVVLFDNKTKDPRIQAKQLETLLDVVDSVSANNGGNPFTDQMLTRLKEVHDREMEVHDA 457
           +++++ + KT+     A   E L  +VD +++ N  +   +Q+    K+    ++ +   
Sbjct: 37  DQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYM 96

Query: 456 MGYSEDQITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQV 328
           +    + +   K     TR   +  I  + E K+ + VE+ +V
Sbjct: 97  IQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARV 139

>RCN1_HUMAN (Q15293) Reticulocalbin-1 precursor|
          Length = 331

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = -1

Query: 618 DNKTKDPRIQAKQLETLLDVVDSVSANNGGNPFTDQMLTRLKEVHDREMEVHDAMGYSED 439
           D+KT D     +  E L  +VD +  +  G   T+++ T +K V  R         Y  D
Sbjct: 68  DSKTFDQLTPDESKERLGKIVDRIDNDGDGFVTTEELKTWIKRVQKR---------YIFD 118

Query: 438 QITELKKEIHRTRDEQLA 385
            + ++ K+  R +D++++
Sbjct: 119 NVAKVWKDYDRDKDDKIS 136

>NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
          Length = 845

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 19/104 (18%)
 Frame = -1

Query: 576 ETLLDVVDSVSANNGGNPFTDQMLTRLKE------VHDREMEVHDAMGYSEDQITELKKE 415
           E+ LD   S S  NGG+   D  L+R  E      ++DR     + + Y E Q  E++ E
Sbjct: 72  ESSLDFSQSSSLLNGGSG-GDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAE 130

Query: 414 IHRTR-------------DEQLANITAMVEEKLNITVEKLQVQL 322
           IH  R             D+++  + A +E    +  EK QVQL
Sbjct: 131 IHALRQKQASHAQLGDAYDQEIRELRATLE---MVNHEKAQVQL 171

>SLYA_SALTY (P40676) Transcriptional regulator slyA (Salmolysin) (Cytolysin|
           slyA)
          Length = 144

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -1

Query: 435 ITELKKEIHRTRDEQLANITAMVEEKLNITVEKLQVQLME 316
           I E+++ IH+TR E LA I++   E L   + KL+  +ME
Sbjct: 100 IAEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEHNIME 139

>MRCKA_RAT (O54874) Serine/threonine-protein kinase MRCK alpha (EC 2.7.11.1)|
           (CDC42-binding protein kinase alpha) (Myotonic dystrophy
           kinase-related CDC42-binding kinase alpha) (Myotonic
           dystrophy protein kinase-like alpha) (MRCK alpha)
          Length = 1732

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
 Frame = -1

Query: 513 QMLTRLKEVHDR-----EMEVHDAMGYSEDQITELKKEIHRTRDEQLA-NITAMV-EEKL 355
           Q +T+LK   ++     E E+    G    +I  LKKE+H +  +QLA N   MV ++KL
Sbjct: 684 QEITKLKTDLEKKSIFYEEEISKREGIHASEIKNLKKELHDSEGQQLALNKEIMVLKDKL 743

Query: 354 NITVEKLQVQLMEEQN 307
             T  + Q +  E +N
Sbjct: 744 EKTRRESQSEREEFEN 759


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,413,456
Number of Sequences: 219361
Number of extensions: 1476096
Number of successful extensions: 6049
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6029
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)