>ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing protein 6|
          Length = 1189

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
 Frame = -2

Query: 613 HEVGDRHPLNGLSRAAVLSNNDAGPSYLEMLPFPQHMYEQTVHQGPGEHDPSVPQNGGSY 434
           H++G + P      A   S +  GP +    P PQH+Y      GPG   P++ Q   S 
Sbjct: 442 HKIGRKPP------AFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPG---PNMSQGHSSP 492

Query: 433 SLHQGNILNDQGPLSAQPTIPFHNF-----FPDDIIADASQSG 320
            +H G+      P +  P +P          P +I+   +Q+G
Sbjct: 493 VMHPGS--PGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAG 533

>IXR1_YEAST (P33417) Intrastrand crosslink recognition protein|
           (Structure-specific recognition protein) (SSRP)
          Length = 597

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = -2

Query: 589 LNGLSRAAVLSNNDAGP-SYLEMLPFPQHMYEQTVHQGPGEHDPSVPQN---GGSYSLHQ 422
           LN  + AA  +NN AGP SYL  LP  Q  Y   ++      DPS   N     + + H 
Sbjct: 214 LNPATAAAAAANNAAGPASYLSQLPQVQRYYPNNMNALSSLLDPSSAGNAAGNANTATHP 273

Query: 421 GNILNDQGPLSAQPTIPFH 365
           G +     P + QP +  H
Sbjct: 274 GLL-----PPNLQPQLTHH 287

>GLGB_BACSU (P39118) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 627

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -2

Query: 643 WQYHNGKAAQHEVGDRHPLNGLSRAAVLSNNDAGPSYLEMLPFPQHMYEQT-VHQGPGEH 467
           ++ H G   +H  G  +    LS+  +      G +++E+LP  +H Y+++  +QG G +
Sbjct: 151 YELHLGSWKKHSDGRHYSYKELSQTLIPYIKKHGFTHIELLPVYEHPYDRSWGYQGTGYY 210

Query: 466 DPS 458
            P+
Sbjct: 211 SPT 213

>ETFD_ACIAD (P94132) Probable electron transfer flavoprotein-ubiquinone|
           oxidoreductase (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone
           oxidoreductase) (ETF dehydrogenase)
           (Electron-transferring-flavoprotein dehydrogenase)
          Length = 570

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 15/105 (14%)
 Frame = -2

Query: 505 MYEQTVHQGPGEHDPSVPQNGGSYSLHQGNILNDQGPLSAQPTIP-FHNFFPDDII--AD 335
           M ++   + P    P    N G+Y +  GN++   G  + +  +  F  F   +I+  AD
Sbjct: 94  MSDEKSQEAPHWMVPKTMHNDGNYVISLGNVVRWLGQKAEELEVSIFPGFAAAEILYHAD 153

Query: 334 ASQSGFNSFD------------FEPW*YDRDAKQSTFRHGCRVHL 236
            +  G  + D            F P  Y+  AK + F  GCR HL
Sbjct: 154 GTVKGIQTGDMGIGKDGEPTHNFAPG-YELHAKYTLFAEGCRGHL 197

>PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2|
          Length = 429

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
 Frame = -2

Query: 703 PVSALPLNNDAGPSVQAGTPWQYHNGKAAQHEVGDRHPLNGLSRAAVLSNNDAGPSYLEM 524
           P   +P+      +  AG P QYH    + H+   +     +      S    G  +   
Sbjct: 341 PNPPVPMPQQPVQNPYAGNPQQYHAAGGSHHQQQQQPQGGWVQPGGQGSMGMGGGGHNHY 400

Query: 523 LPFPQHMYEQTVHQGPGEHDPSVPQN-GGSYSLH 425
           +  P      ++HQGPG H P  PQ+ GG   +H
Sbjct: 401 MAPPS---SSSMHQGPGGHMP--PQHYGGPGPMH 429

>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and|
            dental anomalies protein)
          Length = 1630

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 580  THSMDVDLQLRVVQPCHYDIAMAFQLVRKDLHH 678
            T S+  DL+L ++ P H D++    ++ K  HH
Sbjct: 1051 TISLSKDLELPIIPPTHLDLSALHNVLNKPFHH 1083

>VGP_MABVM (P35253) Structural glycoprotein precursor (Virion spike|
           glycoprotein)
          Length = 681

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 463 PSVPQNGGSYSLHQGNILN--DQGPLSAQPTIPFHN 362
           PS PQ GG+ + H  + +   D+   +AQP++P HN
Sbjct: 302 PSTPQQGGNNTNHSQDAVTELDKNNTTAQPSMPPHN 337

>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
 Frame = -2

Query: 697 SALPLNNDAGPSVQAGTPWQYHNGKAAQH-----EVGDRHPLNGLSRAAVLSNNDAGPSY 533
           S +P       +   G P+ YHNG A  H      V    P   +  + V+    A P Y
Sbjct: 120 SIMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSPVMV---AQPIY 176

Query: 532 LEMLPFPQHMYEQTVHQGPGEHDPSVPQNGGS 437
            +    P + Y+ T    PG+   SVPQ   S
Sbjct: 177 QQ----PAYHYQATTQYLPGQWQWSVPQPSAS 204

>PPO1_PHYPO (Q94702) Intron-encoded endonuclease I-PpoI (EC 3.1.-.-) (I-Ppo)|
          Length = 163

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 250 IHA*TCSASHLCHTTTARNQMN 315
           I+  TC+ASHLCH T   N ++
Sbjct: 89  INGKTCTASHLCHNTRCHNPLH 110

>HCN1_MOUSE (O88704) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 1 (Brain cyclic nucleotide
           gated channel 1) (BCNG-1) (Hyperpolarization-activated
           cation channel 2) (HAC-2)
          Length = 910

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 511 QHMYEQTVHQGPGEHDPSVPQNGGSYSLHQGNILNDQGPLSA-QPTIP 371
           Q   +Q   Q PG   P    +  + +LH  N+  +  PLSA QP++P
Sbjct: 768 QQQQQQQQPQTPGSSTPKNEVHKSTQALHNTNLTKEVRPLSASQPSLP 815

>SYIC_MOUSE (Q8BU30) Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)|
            (Isoleucine--tRNA ligase) (IleRS) (IRS)
          Length = 1262

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 456  TEGSCSPGP*CTVCSYMCCGNGS 524
            T+GSC PGP C   +   C NG+
Sbjct: 1070 TKGSCVPGPACAYVNLNICANGT 1092

>ZC3H6_MOUSE (Q8BYK8) Zinc finger CCCH-type domain-containing protein 6|
          Length = 1177

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = -2

Query: 613 HEVGDRHPLNGLSRAAVLSNNDAGPSYLEMLPFPQHMYEQTVHQGPGEHDPSVPQNGGSY 434
           H++G + P      A   S +  GP + E    PQ MY      GPG     VPQ   S 
Sbjct: 440 HKIGKKPP------AFYNSTSPPGPQFEESSHCPQRMYSSESSPGPGS---KVPQGCESP 490

Query: 433 SLHQGN 416
             H G+
Sbjct: 491 VRHPGS 496


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,830,066
Number of Sequences: 219361
Number of extensions: 2620508
Number of successful extensions: 7096
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7087
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7139613222
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)