| Clone Name | rbasd17b10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK098979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093C17, full insert sequence Length = 1120 Score = 147 bits (74), Expect = 5e-32 Identities = 163/192 (84%), Gaps = 3/192 (1%) Strand = Plus / Minus Query: 356 tgcattttgatccagtgtgttgtaggtgtagtcgcttgtggagttcaatccatacttttg 415 ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| || Sbjct: 796 tgcatttggatccagtgtgttgtaggtgtagttgcttg---agttcaatccatacttgtg 740 Query: 416 cctcatcgatgagctccataggccaggctgggcacctcttgggtcggccgtggtagggat 475 ||||| ||||||||||||||| || ||| |||||| | ||||| |||||||| | Sbjct: 739 tctcattcttgagctccataggcctggatggaaacctctagtatcggcggtggtaggaag 680 Query: 476 ataggctggagcaccttgggcaagaagcagcggcctccttatgaccacaaaatcttcttc 535 ||| || |||||||||||||||| || || |||||||||||||||||||||||||| || Sbjct: 679 ataagcgggagcaccttgggcaaccagaagtggcctccttatgaccacaaaatcttcatc 620 Query: 536 gctatcatagtc 547 || |||||||| Sbjct: 619 actgtcatagtc 608
>dbj|AK120175.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033B05, full insert sequence Length = 1693 Score = 139 bits (70), Expect = 1e-29 Identities = 162/192 (84%), Gaps = 3/192 (1%) Strand = Plus / Minus Query: 356 tgcattttgatccagtgtgttgtaggtgtagtcgcttgtggagttcaatccatacttttg 415 ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| || Sbjct: 924 tgcatttggatccagtgtgttgtaggtgtagttgcttg---agttcaatccatacttgtg 868 Query: 416 cctcatcgatgagctccataggccaggctgggcacctcttgggtcggccgtggtagggat 475 ||||| ||||||||||||| | || ||| |||||| | ||||| |||||||| | Sbjct: 867 tctcattcttgagctccataggtctggatggaaacctctagtatcggcggtggtaggaag 808 Query: 476 ataggctggagcaccttgggcaagaagcagcggcctccttatgaccacaaaatcttcttc 535 ||| || |||||||||||||||| || || |||||||||||||||||||||||||| || Sbjct: 807 ataagcgggagcaccttgggcaaccagaagtggcctccttatgaccacaaaatcttcatc 748 Query: 536 gctatcatagtc 547 || |||||||| Sbjct: 747 actgtcatagtc 736
>dbj|AK065285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M13, full insert sequence Length = 1136 Score = 139 bits (70), Expect = 1e-29 Identities = 162/192 (84%), Gaps = 3/192 (1%) Strand = Plus / Minus Query: 356 tgcattttgatccagtgtgttgtaggtgtagtcgcttgtggagttcaatccatacttttg 415 ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| || Sbjct: 796 tgcatttggatccagtgtgttgtaggtgtagttgcttg---agttcaatccatacttgtg 740 Query: 416 cctcatcgatgagctccataggccaggctgggcacctcttgggtcggccgtggtagggat 475 ||||| ||||||||||||| | || ||| |||||| | ||||| |||||||| | Sbjct: 739 tctcattcttgagctccataggtctggatggaaacctctagtatcggcggtggtaggaag 680 Query: 476 ataggctggagcaccttgggcaagaagcagcggcctccttatgaccacaaaatcttcttc 535 ||| || |||||||||||||||| || || |||||||||||||||||||||||||| || Sbjct: 679 ataagcgggagcaccttgggcaaccagaagtggcctccttatgaccacaaaatcttcatc 620 Query: 536 gctatcatagtc 547 || |||||||| Sbjct: 619 actgtcatagtc 608
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 85.7 bits (43), Expect = 1e-13 Identities = 103/123 (83%) Strand = Plus / Minus Query: 425 tgagctccataggccaggctgggcacctcttgggtcggccgtggtagggatataggctgg 484 ||||||||||||| | || ||| |||||| | ||||| |||||||| | ||| || || Sbjct: 30666901 tgagctccataggtctggatggaaacctctagtatcggcggtggtaggaagataagcggg 30666842 Query: 485 agcaccttgggcaagaagcagcggcctccttatgaccacaaaatcttcttcgctatcata 544 |||||||||||||| || || |||||||||||||||||||||||||| || || ||||| Sbjct: 30666841 agcaccttgggcaaccagaagtggcctccttatgaccacaaaatcttcatcactgtcata 30666782 Query: 545 gtc 547 ||| Sbjct: 30666781 gtc 30666779 Score = 67.9 bits (34), Expect = 3e-08 Identities = 51/56 (91%), Gaps = 3/56 (5%) Strand = Plus / Minus Query: 356 tgcattttgatccagtgtgttgtaggtgtagtcgcttgtggagttcaatccatact 411 ||||||| |||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 30668057 tgcatttggatccagtgtgttgtaggtgtagttgctt---gagttcaatccatact 30668005
>dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1206D04 Length = 130176 Score = 85.7 bits (43), Expect = 1e-13 Identities = 103/123 (83%) Strand = Plus / Minus Query: 425 tgagctccataggccaggctgggcacctcttgggtcggccgtggtagggatataggctgg 484 ||||||||||||| | || ||| |||||| | ||||| |||||||| | ||| || || Sbjct: 69557 tgagctccataggtctggatggaaacctctagtatcggcggtggtaggaagataagcggg 69498 Query: 485 agcaccttgggcaagaagcagcggcctccttatgaccacaaaatcttcttcgctatcata 544 |||||||||||||| || || |||||||||||||||||||||||||| || || ||||| Sbjct: 69497 agcaccttgggcaaccagaagtggcctccttatgaccacaaaatcttcatcactgtcata 69438 Query: 545 gtc 547 ||| Sbjct: 69437 gtc 69435 Score = 67.9 bits (34), Expect = 3e-08 Identities = 51/56 (91%), Gaps = 3/56 (5%) Strand = Plus / Minus Query: 356 tgcattttgatccagtgtgttgtaggtgtagtcgcttgtggagttcaatccatact 411 ||||||| |||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 70713 tgcatttggatccagtgtgttgtaggtgtagttgctt---gagttcaatccatact 70661
>gb|AC131761.4| Mus musculus BAC clone RP24-228J4 from chromosome 18, complete sequence Length = 167442 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 428 gctccataggccaggctgggc 448 ||||||||||||||||||||| Sbjct: 158470 gctccataggccaggctgggc 158490
>gb|AC124393.5| Mus musculus BAC clone RP24-331E1 from chromosome 18, complete sequence Length = 171769 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 gctccataggccaggctgggc 448 ||||||||||||||||||||| Sbjct: 137247 gctccataggccaggctgggc 137227
>gb|AC161511.3| Mus musculus chromosome 18, clone RP23-37O16, complete sequence Length = 186860 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 428 gctccataggccaggctgggc 448 ||||||||||||||||||||| Sbjct: 18642 gctccataggccaggctgggc 18662
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 tgtgcttcgtcatcagtcaca 333 ||||||||||||||||||||| Sbjct: 2035838 tgtgcttcgtcatcagtcaca 2035858
>gb|AF424783.1| Staphylococcus aureus phage phi 13, complete genome Length = 42722 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 tgtgcttcgtcatcagtcaca 333 ||||||||||||||||||||| Sbjct: 32802 tgtgcttcgtcatcagtcaca 32782
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 acggccacctcctggctgtcc 193 ||||||||||||||||||||| Sbjct: 2964335 acggccacctcctggctgtcc 2964315
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 tgtgcttcgtcatcagtcaca 333 ||||||||||||||||||||| Sbjct: 2093500 tgtgcttcgtcatcagtcaca 2093520
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 tgtgcttcgtcatcagtcaca 333 ||||||||||||||||||||| Sbjct: 2041831 tgtgcttcgtcatcagtcaca 2041851
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 tgtgcttcgtcatcagtcaca 333 ||||||||||||||||||||| Sbjct: 2056592 tgtgcttcgtcatcagtcaca 2056612
>emb|AL163636.7|CNS01RIK Human chromosome 14 DNA sequence BAC R-903H12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 202337 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 attttatccagattgacagaa 231 ||||||||||||||||||||| Sbjct: 128769 attttatccagattgacagaa 128789
>ref|XM_745050.1| Aspergillus fumigatus Af293 translation regulator Cya5 (Afu1g03930) partial mRNA Length = 3888 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 gtgcttcgtcatcagtcaca 333 |||||||||||||||||||| Sbjct: 3535 gtgcttcgtcatcagtcaca 3516
>gb|AC154334.2| Mus musculus BAC clone RP24-497L7 from chromosome 14, complete sequence Length = 127819 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 aatgcaaatacttccattcc 92 |||||||||||||||||||| Sbjct: 19929 aatgcaaatacttccattcc 19910
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 gtactgcatatatgatatgt 315 |||||||||||||||||||| Sbjct: 1925488 gtactgcatatatgatatgt 1925469
>emb|AL355775.1|ATF12M12 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12 Length = 106730 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 tgacttatgtactgcatatatgat 311 |||| ||||||||||||||||||| Sbjct: 87003 tgacctatgtactgcatatatgat 86980
>emb|CR938201.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YH06AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 903 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 agcccaaaacatccaacaagatgg 156 ||||||||||||||| |||||||| Sbjct: 58 agcccaaaacatccagcaagatgg 81
>emb|CR938178.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YH20AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 904 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 agcccaaaacatccaacaagatgg 156 ||||||||||||||| |||||||| Sbjct: 58 agcccaaaacatccagcaagatgg 81
>emb|CR938166.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YI05AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 910 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 agcccaaaacatccaacaagatgg 156 ||||||||||||||| |||||||| Sbjct: 58 agcccaaaacatccagcaagatgg 81
>emb|CR938016.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YN08AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 882 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 agcccaaaacatccaacaagatgg 156 ||||||||||||||| |||||||| Sbjct: 35 agcccaaaacatccagcaagatgg 58
>emb|BX005459.6| Zebrafish DNA sequence from clone CH211-214N22 in linkage group 6, complete sequence Length = 211210 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 atacacatccaatgcaaata 82 |||||||||||||||||||| Sbjct: 189072 atacacatccaatgcaaata 189053
>emb|BX511190.8| Zebrafish DNA sequence from clone RP71-80D18 in linkage group 5, complete sequence Length = 156408 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 acatacaaatgtatacagtg 258 |||||||||||||||||||| Sbjct: 81123 acatacaaatgtatacagtg 81142
>ref|XM_691600.1| PREDICTED: Danio rerio similar to spinster-like (LOC568280), mRNA Length = 1179 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 ctcatccatctctccgacta 114 |||||||||||||||||||| Sbjct: 198 ctcatccatctctccgacta 217
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tataatgttcttttactaac 46 |||||||||||||||||||| Sbjct: 4128401 tataatgttcttttactaac 4128420
>gb|AC116849.11| Mus musculus chromosome 19, clone RP24-395F1, complete sequence Length = 168486 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 attttgatccagtgtgttgt 378 |||||||||||||||||||| Sbjct: 78940 attttgatccagtgtgttgt 78921
>dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1590_E05 Length = 148205 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tataatgttcttttactaac 46 |||||||||||||||||||| Sbjct: 28024 tataatgttcttttactaac 28043
>emb|BX005059.4| Zebrafish DNA sequence from clone CH211-138A6, complete sequence Length = 194603 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 ctcatccatctctccgacta 114 |||||||||||||||||||| Sbjct: 107501 ctcatccatctctccgacta 107520
>dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0458D06 Length = 166038 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tataatgttcttttactaac 46 |||||||||||||||||||| Sbjct: 121514 tataatgttcttttactaac 121533
>gb|AF109296.1|AF109296 Leishmania donovani proton motive P-type ATPase gene locus, complete sequence Length = 15413 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 agcaccttgggcaagaagca 504 |||||||||||||||||||| Sbjct: 11361 agcaccttgggcaagaagca 11342 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,768,295 Number of Sequences: 3902068 Number of extensions: 5768295 Number of successful extensions: 99794 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99561 Number of HSP's gapped (non-prelim): 228 length of query: 566 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 543 effective length of database: 17,143,297,704 effective search space: 9308810653272 effective search space used: 9308810653272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)