ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16m03 |
|---|---|
| Clone Library Name | barley_pub |
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 236 bits (603), Expect = 3e-62 Identities = 118/132 (89%), Positives = 118/132 (89%) Frame = -2 Query: 644 KVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKG 465 KVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKG Sbjct: 920 KVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKG 979 Query: 464 LNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXX 285 LNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHL Sbjct: 980 LNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDN 1039 Query: 284 XXDIPLVSVYFR 249 DIPLVSVYFR Sbjct: 1040 DVDIPLVSVYFR 1051
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 236 bits (603), Expect = 3e-62 Identities = 118/132 (89%), Positives = 118/132 (89%) Frame = -2 Query: 644 KVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKG 465 KVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKG Sbjct: 920 KVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKG 979 Query: 464 LNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXX 285 LNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHL Sbjct: 980 LNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDN 1039 Query: 284 XXDIPLVSVYFR 249 DIPLVSVYFR Sbjct: 1040 DVDIPLVSVYFR 1051
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 197 bits (500), Expect = 3e-50 Identities = 93/131 (70%), Positives = 107/131 (81%) Frame = -2 Query: 641 VEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGL 462 VEDYRNTFANLA+PLFS+AEPVPPK +KH+E SWTVWDRW+V GN+TL ELL+W +KGL Sbjct: 923 VEDYRNTFANLALPLFSMAEPVPPKVMKHKETSWTVWDRWSVQGNLTLAELLQWFADKGL 982 Query: 461 NAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXX 282 AYSISCGTSLLYN+MF RHK+RL +KVVD+AREVAK++VP YRRHL Sbjct: 983 TAYSISCGTSLLYNNMFARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDEND 1042 Query: 281 XDIPLVSVYFR 249 DIPLVSVYFR Sbjct: 1043 VDIPLVSVYFR 1053
>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)| Length = 205 Score = 84.0 bits (206), Expect = 4e-16 Identities = 46/111 (41%), Positives = 71/111 (63%), Gaps = 4/111 (3%) Frame = -2 Query: 641 VEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSW-TVWDRWTVTGNITLRELLE-WLKEK 468 +E Y+N F NLA+P +EP+ K+ + +WDR+ + G+ITL+ELL+ + KE+ Sbjct: 72 IEQYKNGFINLALPFIGFSEPIKSPEGKYNNKKFDQIWDRFELNGDITLQELLDHFEKEE 131 Query: 467 GLNAYSISCGTSLLYNSMFP--RHKERLDRKVVDVAREVAKMEVPSYRRHL 321 GL +S G SLLY S FP + K+RL K+ + +EV+K EVPS+ ++L Sbjct: 132 GLTISMLSYGVSLLYASFFPPKKVKDRLGLKLTSLIKEVSKKEVPSHVKNL 182
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 75.1 bits (183), Expect = 2e-13 Identities = 40/107 (37%), Positives = 66/107 (61%), Gaps = 4/107 (3%) Frame = -2 Query: 641 VEDYRNTFANLAIPLFSIAEPV-PPKTIKHQELSWTVWDRWTVTGNITLRELLE-WLKEK 468 +E Y+N F NLA+P F +EP+ PK + + +WDR+ + G+I L +L+E + K++ Sbjct: 891 IEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKGDIKLSDLIEHFEKDE 950 Query: 467 GLNAYSISCGTSLLYNSMFP--RHKERLDRKVVDVAREVAKMEVPSY 333 GL +S G SLLY S FP + KERL+ + + + V K ++P++ Sbjct: 951 GLEITMLSYGVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAH 997
>UBE1Y_MOUSE (P31254) Ubiquitin-activating enzyme E1 Y (Fragment)| Length = 442 Score = 74.7 bits (182), Expect = 2e-13 Identities = 40/117 (34%), Positives = 70/117 (59%), Gaps = 9/117 (7%) Frame = -2 Query: 644 KVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTG------NITLRELLE 483 ++E Y+N+F NLA+PLFS + P+ P+ + + WT+WDR+ V G +TL++ L+ Sbjct: 302 QLESYKNSFINLALPLFSFSAPLAPECHQFYDQEWTLWDRFDVQGLQPSGEEMTLKQFLD 361 Query: 482 WLK-EKGLNAYSISCGTSLLYNSMFP--RHKERLDRKVVDVAREVAKMEVPSYRRHL 321 + K E L +S G S+LY+ P + KERLD+ + ++ V+K ++ + + L Sbjct: 362 YFKTEHKLEVIMLSQGVSMLYSVFMPASKLKERLDQPMTEIVSCVSKQKLGHHVKSL 418
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 73.2 bits (178), Expect = 6e-13 Identities = 41/113 (36%), Positives = 71/113 (62%), Gaps = 5/113 (4%) Frame = -2 Query: 644 KVEDYRNTFANLAIPLFSIAEPV--PPKTIKHQELSWTVWDRWTVTGNITLRELLEWL-K 474 K+E+Y+N F NLAI LF+ ++P+ P + +E+ +WDR+ + + TL+EL+++ K Sbjct: 879 KIEEYKNGFFNLAIGLFTFSDPIASPKMKVNGKEID-KIWDRYNLP-DCTLQELIDYFQK 936 Query: 473 EKGLNAYSISCGTSLLYNSMFPRHK--ERLDRKVVDVAREVAKMEVPSYRRHL 321 E+GL +S G SLLY + P K ERL K+ ++ ++ K ++ +R+HL Sbjct: 937 EEGLEVTMLSSGVSLLYANFQPPKKLAERLPLKISELVEQITKKKLEPFRKHL 989
>UBE1X_MOUSE (P31253) Ubiquitin-activating enzyme E1 X (Fragment)| Length = 450 Score = 71.6 bits (174), Expect = 2e-12 Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 9/116 (7%) Frame = -2 Query: 644 KVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTG------NITLRELLE 483 +++ Y+N F NLA+P F +EP+ ++ WT+WDR+ V G +TL++ L+ Sbjct: 304 QLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGVQPNGEEMTLKQFLD 363 Query: 482 WLK-EKGLNAYSISCGTSLLYNSMFP--RHKERLDRKVVDVAREVAKMEVPSYRRH 324 + K E L +S G S+LY+ P + KERLD+ + ++ V+K ++ + RH Sbjct: 364 YFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRH 419
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 69.3 bits (168), Expect = 9e-12 Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 9/117 (7%) Frame = -2 Query: 644 KVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTG------NITLRELLE 483 +++ Y+N F NLA+P F +EP+ ++ WT+WDR+ V G +TL++ L+ Sbjct: 918 QLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLD 977 Query: 482 WLK-EKGLNAYSISCGTSLLYNSMFP--RHKERLDRKVVDVAREVAKMEVPSYRRHL 321 + K E L +S G S+LY+ P + KERLD+ + ++ V+K ++ + R L Sbjct: 978 YFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRAL 1034
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 69.3 bits (168), Expect = 9e-12 Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 9/117 (7%) Frame = -2 Query: 644 KVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTG------NITLRELLE 483 +++ Y+N F NLA+P F +EP+ ++ WT+WDR+ V G +TL++ L+ Sbjct: 918 QLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLD 977 Query: 482 WLK-EKGLNAYSISCGTSLLYNSMFP--RHKERLDRKVVDVAREVAKMEVPSYRRHL 321 + K E L +S G S+LY+ P + KERLD+ + ++ V+K ++ + R L Sbjct: 978 YFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRAL 1034
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 68.9 bits (167), Expect = 1e-11 Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 9/116 (7%) Frame = -2 Query: 641 VEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTG------NITLRELLEW 480 ++ Y+N F NLA+P F +EP+ ++ WT+WDR+ V G +TL++ L++ Sbjct: 919 LDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDY 978 Query: 479 LK-EKGLNAYSISCGTSLLYNSMFP--RHKERLDRKVVDVAREVAKMEVPSYRRHL 321 K E L +S G S+LY+ P + KERLD+ + ++ V+K ++ + R L Sbjct: 979 FKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRAL 1034
>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)| Length = 1011 Score = 33.5 bits (75), Expect = 0.55 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 6/98 (6%) Frame = -2 Query: 632 YRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTG---NITLRELLEWLKEK-G 465 +R+++ +LA P P L WT WDR V TL LL L+E+ G Sbjct: 880 FRHSYLHLAENYLIRYMPFAPAIQTFHHLKWTSWDRLKVPAGQPERTLESLLAHLQEQHG 939 Query: 464 LNAYSISCGTSLLYNSMFPRHK--ERLDRKVVDVAREV 357 L + G++LLY + + K + L +V ++ +++ Sbjct: 940 LRVRILLHGSALLYAAGWSPEKQAQHLPLRVTELVQQL 977
>AMOH_ARTGO (Q59118) Histamine oxidase (EC 1.4.3.6) (Copper amine oxidase)| Length = 683 Score = 32.3 bits (72), Expect = 1.2 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -1 Query: 591 HC*TGSTQDHQAPGAVVDGLGPVDCNGQHH 502 HC TGS ++H APG G D GQ H Sbjct: 651 HCGTGSEREHAAPGGTAVGHSGPDTGGQGH 680
>Y062_METJA (Q60369) Hypothetical protein MJ0062| Length = 207 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = -2 Query: 497 RELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAR 363 +++LE+LK++ LN + CGT LY E+ RKV ++ R Sbjct: 19 KKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIKR 63
>SENP7_HUMAN (Q9BQF6) Sentrin-specific protease 7 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP7) (SUMO-1-specific protease 2) Length = 984 Score = 31.6 bits (70), Expect = 2.1 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 6/97 (6%) Frame = +3 Query: 156 QLTVTNATHDLSVDQA*PTTRSCEHR*SASSAEVDRHKRDVDIVVIVILTGHHDVEMTPV 335 +LT++NAT S + S+ E + +DIV I L + E+ + Sbjct: 309 ELTLSNATKSAS---------------AGSTTETVEYSNSIDIVGISSLVEKDENELNTI 353 Query: 336 RGHLHLGHLPGNINYLSVKPFLV------PGEHRVVE 428 + GH GN + +S +P +V P EH+ E Sbjct: 354 EKPILRGHNEGNQSLISAEPIVVSSDEEGPVEHKSSE 390
>FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) Length = 398 Score = 30.8 bits (68), Expect = 3.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +2 Query: 338 RAPPSWPPPWQHQLP 382 + PP WPPPW Q+P Sbjct: 112 KGPPDWPPPWGVQMP 126
>XERD_RICPR (Q9ZDG8) Tyrosine recombinase xerD| Length = 311 Score = 29.6 bits (65), Expect = 8.0 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 279 DIVVIVILTGHHDVEMTPVRGHLHLGHL 362 D+ VI L GH D+ T + HLH HL Sbjct: 267 DLRVIQELLGHADISTTQIYTHLHTNHL 294
>SYY2_BACCZ (Q631P9) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 330 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 446 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>SYY2_BACC1 (Q72Y10) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 330 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 446 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>SYY2_BACAN (Q81XC6) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 330 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 446 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 654 Score = 29.6 bits (65), Expect = 8.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 273 DVDIVVIVILTGHHDVEMTPVRGHLHLG 356 D+DI+ + I GH V + VRG HLG Sbjct: 268 DIDILAVAIKGGHACVNLAMVRGGRHLG 295
>SYY2_BACCR (Q815S0) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 420 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 330 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 446 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,054,985 Number of Sequences: 219361 Number of extensions: 1711204 Number of successful extensions: 5492 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5481 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
