>GRPE_BACHD (Q9KD73) Protein grpE (HSP-70 cofactor)|
          Length = 194

 Score = 34.7 bits (78), Expect = 0.26
 Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 4/193 (2%)
 Frame = -2

Query: 619 VHKTDEKIEQSTDVLKAIISPVMNEGEDAMWPPRNPEALKLMEKEISNREKEGQLDESFL 440
           V +T+EK E   ++L     P   + ++A     N E  +L E+E    E EGQ+D    
Sbjct: 9   VEETEEKAETEDEMLTE--DPSNEDSDEA-----NEEGNELSEEEKRIAELEGQVD---- 57

Query: 439 SEVNAQLRQAKEDVDKPGLQVMLQK--VLQLYASNFLQKRSYAYKGGEVVVPEKFLESII 266
            E+N +L + + D D    +   +K    +  A + +++   A         + F  +++
Sbjct: 58  -ELNQRLLRIQADYDNFRRRQREEKEAAAKYRAQSLIEELLPAL--------DNFERALL 108

Query: 265 EAPENDWNRLLLDGLTVGKGDVSPEEFYAVTKKRIERILIRTEGGSYQQRV--LVEYIKE 92
             PE +  + LL G+ +    VS     A+ K+ +E  +I T+G ++   +   V  +++
Sbjct: 109 VEPEQEETKTLLKGMEMVYRQVSE----ALKKEGLE--VIETKGETFDPHLHQAVMQVED 162

Query: 91  IQARAEEIVNRLK 53
            +  + EIV  L+
Sbjct: 163 AEFESNEIVEELQ 175

>KAPR_SCHPO (P36600) cAMP-dependent protein kinase regulatory subunit (PKA|
           regulatory subunit)
          Length = 412

 Score = 32.7 bits (73), Expect = 0.98
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = -2

Query: 529 WPPRNPEALKLMEKEISNREKEGQLDESFLSEVNAQLRQAKEDVDKPGLQVMLQKVLQLY 350
           +PP++PE LK +++ ++       LDE   +EV   + + +  + + G+ V++Q  +  Y
Sbjct: 123 FPPKDPEDLKRLKRSVAGNFLFKNLDEEHYNEVLNAMTEKR--IGEAGVAVIVQGAVGDY 180

Query: 349 ASNFLQKRSYAYKGGEV-VVPEKFLES 272
                Q     YK  E+ + PE+ L S
Sbjct: 181 FYIVEQGEFDVYKRPELNITPEEVLSS 207

>KTN1_CHICK (Q90631) Kinectin|
          Length = 1364

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 20/73 (27%), Positives = 41/73 (56%)
 Frame = -2

Query: 649  ENVMNIVDRVVHKTDEKIEQSTDVLKAIISPVMNEGEDAMWPPRNPEALKLMEKEISNRE 470
            +++++ + +V+H+ D KI+   ++L+A I  V N+ +      +  EALK   +E+ N +
Sbjct: 796  QSLVDELQKVIHEKDGKIKSVEELLQAEILKVANKEKTVQALTQKIEALK---EEVGNSQ 852

Query: 469  KEGQLDESFLSEV 431
             E +   S  S+V
Sbjct: 853  LEMEKQVSITSQV 865

>HSLU_PASMU (P57968) ATP-dependent hsl protease ATP-binding subunit hslU|
          Length = 443

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
 Frame = -2

Query: 655 LXENVMNIVDRV-VHKTDEKIEQSTD--VLKAIISPVMNEGEDAMWPPRNPEALKLMEKE 485
           L ++ M +V +  + K   + E++ +  +L A++ P  N+         N    ++  K+
Sbjct: 103 LTDSAMKLVRQTEIEKNRFRAEEAAEDRILDALLPPAKNQWGQVETTDSNNTTRQVFRKK 162

Query: 484 ISNREKEGQLDESFLSEVNAQLRQAKEDVDKPGLQVM---LQKVLQLYASNFLQKRSYAY 314
           +    +EGQLD+  +    A      E +  PG++ M   LQ + Q  +S   +KR    
Sbjct: 163 L----REGQLDDKEIDIDVAAPSMGVEIMAPPGMEEMTNQLQSMFQNLSSGQTKKRKMKI 218

Query: 313 K----------GGEVVVPEKFLESIIEAPEND 248
           K            +++ PE   +  I+A E +
Sbjct: 219 KDALKTLIDDEAAKLINPEDLKQKAIDAVEQN 250

>IF39_TOBAC (P56821) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta) (eIF3 p110) (eIF3b)
          Length = 719

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
 Frame = -2

Query: 634 IVDRVVHKTDEKIEQSTDVLKAIISPVMNEGEDAMWPPRNPEALKLM-----------EK 488
           +VD +     EK E+   V++ I S +    ED +W P +PE  K +           E 
Sbjct: 63  VVDNLPVVPKEKFEKLEGVVRKIYSQLGVIKEDGLWMPVDPETHKTLGYCFIEYNTPQEA 122

Query: 487 EISNREKEG-QLDESFLSEVN 428
           E+S  +  G +LD S +  VN
Sbjct: 123 ELSKEKTHGYKLDRSHIFAVN 143

>GBF1_HUMAN (Q92538) Golgi-specific brefeldin A-resistance guanine nucleotide|
           exchange factor 1 (BFA-resistant GEF 1)
          Length = 1859

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
 Frame = -2

Query: 574 KAIISPVMNEGEDAMWPPRNPEALKLMEKEISNREKEGQLDESFLSEVNAQ-------LR 416
           K +++  M+  E A W   NP   K M  E  +  K   L ESF+S  + Q       LR
Sbjct: 724 KGLLTIPMDNTEVAQWLRENPRLDKKMIGEFVSDRKNIDLLESFVSTFSFQGLRLDEALR 783

Query: 415 QAKEDVDKPGLQVMLQKVLQLYASNFL 335
              E    PG   ++Q++L+ +   ++
Sbjct: 784 LYLEAFRLPGEAPVIQRLLEAFTERWM 810

>EFTU_SPIPL (P13552) Elongation factor Tu (EF-Tu)|
          Length = 410

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
 Frame = -2

Query: 454 DESFLSEVNAQLRQAKEDVDKPGLQVMLQKVLQLYASNFLQKRSYAYKGGEVVVPEKF-- 281
           DE  L  V  ++R+     D PG  + +     L A +FL +     +G    V +    
Sbjct: 143 DEELLELVELEVRELLSSYDFPGDDIPIVSGSALKALDFLTENPKTTRGENDWVDKIHAL 202

Query: 280 ---LESIIEAPENDWNRLLLDGL------TVGKGDVS 197
              +++ I  PE D ++ LLDGL        G+G VS
Sbjct: 203 MDEVDAYIPTPERDIDKGLLDGLWEDVFSITGRGTVS 239

>SI1L1_RAT (O35412) Signal-induced proliferation-associated 1-like protein 1|
           (SPA-1-like protein p1294)
          Length = 1822

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -2

Query: 286 KFLESIIEAPENDWNRLLLDGLTVGK-GDVSPEEFYAVTKKRIERILIRTEGGSYQQRVL 110
           K  E +++  E   N     G+   K G  + EE Y   K   + + +  +G +YQQ+V 
Sbjct: 594 KVTEQLMKLDEQGLNYQQKVGIMYCKAGQSTEEEMYNTPKVTEQFMKLDEQGLNYQQKVG 653

Query: 109 VEYIKEIQARAEEIVNRLKA 50
           + Y K  Q+  EE+ N   A
Sbjct: 654 IMYCKAGQSTEEEMYNNESA 673

>RAD50_METJA (Q58718) DNA double-strand break repair rad50 ATPase|
          Length = 1005

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
 Frame = -2

Query: 493 EKEISNREKEGQLDESFLSEVNAQLRQAK---EDVDKPGLQVMLQKVLQLYASNFLQ--K 329
           EKE+ N+  + +     L E+N +L + K   ED++K   +   +K+L     N L+  K
Sbjct: 193 EKELKNKMSQLEEKNKKLMEINDKLNKIKKEFEDIEKLFNEWENKKLLYEKFINKLEERK 252

Query: 328 RSYAYKGGEVVVPEKFLESIIEAPE 254
           R+   K  E+ + E  L +++EA E
Sbjct: 253 RALELKNQELKILEYDLNTVVEARE 277

>FLAA_VIBPA (Q56703) Polar flagellin A|
          Length = 376

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
 Frame = -2

Query: 547 EGEDAMWPPRNPEALKLM-------EKEISNREKEGQLDESFLSEVNAQLRQAKEDVDKP 389
           EG+DA W   +   LK+        EKE++ + K+G   E   + +N Q    K  V + 
Sbjct: 180 EGKDASWTVGDKTELKMSYTNKQGEEKELTIKAKQGDDIEQLATYINGQSEDVKASVGED 239

Query: 388 G-LQV 377
           G LQV
Sbjct: 240 GKLQV 244

>UVRC_METAC (Q8TKS2) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 516

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
 Frame = -2

Query: 604 EKIEQSTDVLKAIISPVMNEGEDAMWPPRNPEALKLMEKEISNREKEGQLDESFLSEVNA 425
           EK++++T VLK  I  ++   E  M   +   A ++ E+ ++ R++   L+  +L E   
Sbjct: 177 EKVKRATSVLKGNIGELIESMEKEM---KKMAAKQMFEQAMALRDEISALE--YLQEKQN 231

Query: 424 QLRQAKEDVDKPGLQV----MLQKVLQLYASNFLQKRSYAYKGGEVVVPE 287
             RQ K D D     V    +   + ++Y      K+ Y +  GE  + E
Sbjct: 232 MERQKKHDEDILNYIVRDNTVYLMLFKVYKGTLEDKQDYVFAFGEDFLQE 281

>CLPB_WOLSU (Q7M9X4) Chaperone clpB|
          Length = 857

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 16/126 (12%)
 Frame = -2

Query: 496 MEKEISNREKEGQLDESFLSEVNAQLRQAKEDVDKPGLQVMLQKVL------------QL 353
           +EKE    EKE    E+ + E+ A+L  AKE       Q   +K +            +L
Sbjct: 423 VEKEALLMEKESTHSEARIKEIQAELENAKERQRTLLAQFENEKAVFNEIASIKAKADEL 482

Query: 352 YASNFLQKRSYAY-KGGEV---VVPEKFLESIIEAPENDWNRLLLDGLTVGKGDVSPEEF 185
              + L KRS  Y K  E+    +PE  LE+  +     WNR+   G T+ K  VS E  
Sbjct: 483 RRESELAKRSGDYNKAAEIDYGKIPE--LENREKELNTQWNRMQESG-TLLKNAVSEESI 539

Query: 184 YAVTKK 167
             +  +
Sbjct: 540 AGIVSR 545

>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9|
           region interaction protein) (MIP)
          Length = 890

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 39/183 (21%), Positives = 82/183 (44%), Gaps = 4/183 (2%)
 Frame = -2

Query: 634 IVDRVVHKTDEKIEQSTDVLKA----IISPVMNEGEDAMWPPRNPEALKLMEKEISNREK 467
           + D +  +    I  S+ +++A    +I+ + ++GE   WP   P+   L++ E  N  +
Sbjct: 87  VTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCE 146

Query: 466 EGQLDESFLSEVNAQLRQAKEDVDKPGLQVMLQKVLQLYASNFLQKRSYAYKGGEVVVPE 287
                   + E +A++  + + +D+P L +M+ K LQ +  +  + RS+A     V    
Sbjct: 147 GAFGALQKICEDSAEILDS-DVLDRP-LNIMIPKFLQFFKHSSPKIRSHA-----VACVN 199

Query: 286 KFLESIIEAPENDWNRLLLDGLTVGKGDVSPEEFYAVTKKRIERILIRTEGGSYQQRVLV 107
           +F+ S  +A     +   ++ L    GD  PE    V +  +  + +R +        +V
Sbjct: 200 QFIISRTQALMLHIDS-FIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIV 258

Query: 106 EYI 98
           EY+
Sbjct: 259 EYM 261

>VATE_ARCFU (O29104) V-type ATP synthase subunit E (EC 3.6.3.14) (V-type ATPase|
           subunit E)
          Length = 188

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
 Frame = -2

Query: 631 VDRVVHKTDEKIEQSTDVLKA----IISPVMNEGEDAMWPPRNPE--ALKL-MEKEISNR 473
           V R+  +T++++E+     KA    I+     E E      R  E  ++KL M++E+ N 
Sbjct: 18  VRRIREETEKEVEKILAEAKAEAEEILKKAREEAEKEAEAIRRQEISSVKLEMKRELLNV 77

Query: 472 EKEGQLDESFLSEVNAQLRQAKEDVDKPGLQVMLQKVLQLYASNFLQKRSYAYKGGEVVV 293
           +KE       L EV   LRQ   D+D+   + +L+ +L+  AS  +    Y+ K  E +V
Sbjct: 78  QKE------ILEEVFNLLRQKVRDMDEETRKKILKNLLEKNASPGMV--VYSRKEDEDIV 129

Query: 292 PEKFLE 275
            E   E
Sbjct: 130 KELIKE 135

>RDRP_AHSV9 (O70695) RNA-directed RNA polymerase (EC 2.7.7.48) (VP1)|
          Length = 1305

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 394 KPGLQVMLQKVLQLYASNFLQKRSYAYKGG-EVVVPEKFLESIIEAPEN 251
           KP     +Q+V     +NF++    A +GG E+V+PE    SI+   +N
Sbjct: 398 KPSSDNYVQRVCDYTKNNFIKAYEEARRGGEEIVMPEDMYTSILRLAKN 446

>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)|
          Length = 890

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
 Frame = -2

Query: 634 IVDRVVHKTDEKIEQSTDVLKA----IISPVMNEGEDAMWPPRNPEALKLMEKEISNREK 467
           + D +  +    I  S+ +++A    +I+ + ++GE   WP   P+   L++ E  N  +
Sbjct: 87  VTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCE 146

Query: 466 EGQLDESFLSEVNAQLRQAKEDVDKPGLQVMLQKVLQLYASNFLQKRSYA 317
                   + E +A++  + + +D+P L +M+ K LQ +  +  + RS+A
Sbjct: 147 GAFGALQKICEDSAEILDS-DVLDRP-LNIMIPKFLQFFKHSSPKIRSHA 194

>SUDA_EMENI (Q00737) Chromosome segregation protein sudA (DA-box protein sudA)|
          Length = 1211

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 22/76 (28%), Positives = 40/76 (52%)
 Frame = -2

Query: 625 RVVHKTDEKIEQSTDVLKAIISPVMNEGEDAMWPPRNPEALKLMEKEISNREKEGQLDES 446
           RV   T+ K  +  ++LK +    + E        R  E+LK+M +  S REK  +L + 
Sbjct: 143 RVTALTNMKDSERLNLLKEVAGTQVYEA-------RRAESLKIMHETNSKREKIDELLD- 194

Query: 445 FLSEVNAQLRQAKEDV 398
           F++E  A+L + K+++
Sbjct: 195 FINERLAELEEEKDEL 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,154,586
Number of Sequences: 219361
Number of extensions: 1370265
Number of successful extensions: 5281
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5277
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)