| Clone Name | rbasd16i16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550612.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2281 Score = 321 bits (162), Expect = 1e-84 Identities = 366/434 (84%) Strand = Plus / Minus Query: 132 tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 191 |||||||||||||| |||| |||||||||||||| || |||||||| ||||||| |||| Sbjct: 2041 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 1982 Query: 192 atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 251 ||||| |||||||| || || ||||| ||||||||||| || | |||||| ||| Sbjct: 1981 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 1922 Query: 252 ccgacgtacttttgccatccgagggtagagccagcttcaatgctgatccttgcggtgaca 311 ||||||||||| |||||||| || ||||| || ||||||| ||||| ||||| || ||| Sbjct: 1921 ccgacgtacttctgccatccaagagtagaccctgcttcaaggctgactcttgcagtaaca 1862 Query: 312 gcctcagggagcacgctctccttgtattcatcggactgctcgtcaaaaagctcccagcag 371 ||||||||||| || ||||||||||| ||| | ||||| || || |||||||||||||| Sbjct: 1861 gcctcagggagaacactctccttgtactcagccgactgttcatcgaaaagctcccagcaa 1802 Query: 372 acaaatgacacaacgcggacggtcttcccctccttcgtcaactcttcggcagccttcaca 431 ||||||||||| || ||||| ||||||||||||||| ||||||| || |||||||| | Sbjct: 1801 acaaatgacacgacacggacagtcttcccctccttcctcaactcatcagcagccttggcg 1742 Query: 432 gcaatctctacttcagaaccagtgctcattatgatgtagtcaggcttgtttccactcgag 491 ||||||||| |||||| ||||||||||| | ||| ||||||||||||| ||| | ||| Sbjct: 1741 acaatctctagttcagagccagtgctcatcacaatgaagtcaggcttgttgccagttgag 1682 Query: 492 ttgtcggagatggtgtatccacccttcgcaacaccctcaattgaggtaccaggcagatga 551 ||||| |||| | |||| ||||||||| ||||||||||||| |||||||||||||| ||| Sbjct: 1681 ttgtcagagacgatgtacccacccttctcaacaccctcaatcgaggtaccaggcagctga 1622 Query: 552 ggaagcttttgcct 565 | |||||||||||| Sbjct: 1621 gcaagcttttgcct 1608
>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence Length = 136866 Score = 321 bits (162), Expect = 1e-84 Identities = 366/434 (84%) Strand = Plus / Plus Query: 132 tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 191 |||||||||||||| |||| |||||||||||||| || |||||||| ||||||| |||| Sbjct: 128493 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 128552 Query: 192 atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 251 ||||| |||||||| || || ||||| ||||||||||| || | |||||| ||| Sbjct: 128553 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 128612 Query: 252 ccgacgtacttttgccatccgagggtagagccagcttcaatgctgatccttgcggtgaca 311 ||||||||||| |||||||| || ||||| || ||||||| ||||| ||||| || ||| Sbjct: 128613 ccgacgtacttctgccatccaagagtagaccctgcttcaaggctgactcttgcagtaaca 128672 Query: 312 gcctcagggagcacgctctccttgtattcatcggactgctcgtcaaaaagctcccagcag 371 ||||||||||| || ||||||||||| ||| | ||||| || || |||||||||||||| Sbjct: 128673 gcctcagggagaacactctccttgtactcagccgactgttcatcgaaaagctcccagcaa 128732 Query: 372 acaaatgacacaacgcggacggtcttcccctccttcgtcaactcttcggcagccttcaca 431 ||||||||||| || ||||| ||||||||||||||| ||||||| || |||||||| | Sbjct: 128733 acaaatgacacgacacggacagtcttcccctccttcctcaactcatcagcagccttggcg 128792 Query: 432 gcaatctctacttcagaaccagtgctcattatgatgtagtcaggcttgtttccactcgag 491 ||||||||| |||||| ||||||||||| | ||| ||||||||||||| ||| | ||| Sbjct: 128793 acaatctctagttcagagccagtgctcatcacaatgaagtcaggcttgttgccagttgag 128852 Query: 492 ttgtcggagatggtgtatccacccttcgcaacaccctcaattgaggtaccaggcagatga 551 ||||| |||| | |||| ||||||||| ||||||||||||| |||||||||||||| ||| Sbjct: 128853 ttgtcagagacgatgtacccacccttctcaacaccctcaatcgaggtaccaggcagctga 128912 Query: 552 ggaagcttttgcct 565 | |||||||||||| Sbjct: 128913 gcaagcttttgcct 128926
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 321 bits (162), Expect = 1e-84 Identities = 366/434 (84%) Strand = Plus / Plus Query: 132 tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 191 |||||||||||||| |||| |||||||||||||| || |||||||| ||||||| |||| Sbjct: 1808201 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 1808260 Query: 192 atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 251 ||||| |||||||| || || ||||| ||||||||||| || | |||||| ||| Sbjct: 1808261 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 1808320 Query: 252 ccgacgtacttttgccatccgagggtagagccagcttcaatgctgatccttgcggtgaca 311 ||||||||||| |||||||| || ||||| || ||||||| ||||| ||||| || ||| Sbjct: 1808321 ccgacgtacttctgccatccaagagtagaccctgcttcaaggctgactcttgcagtaaca 1808380 Query: 312 gcctcagggagcacgctctccttgtattcatcggactgctcgtcaaaaagctcccagcag 371 ||||||||||| || ||||||||||| ||| | ||||| || || |||||||||||||| Sbjct: 1808381 gcctcagggagaacactctccttgtactcagccgactgttcatcgaaaagctcccagcaa 1808440 Query: 372 acaaatgacacaacgcggacggtcttcccctccttcgtcaactcttcggcagccttcaca 431 ||||||||||| || ||||| ||||||||||||||| ||||||| || |||||||| | Sbjct: 1808441 acaaatgacacgacacggacagtcttcccctccttcctcaactcatcagcagccttggcg 1808500 Query: 432 gcaatctctacttcagaaccagtgctcattatgatgtagtcaggcttgtttccactcgag 491 ||||||||| |||||| ||||||||||| | ||| ||||||||||||| ||| | ||| Sbjct: 1808501 acaatctctagttcagagccagtgctcatcacaatgaagtcaggcttgttgccagttgag 1808560 Query: 492 ttgtcggagatggtgtatccacccttcgcaacaccctcaattgaggtaccaggcagatga 551 ||||| |||| | |||| ||||||||| ||||||||||||| |||||||||||||| ||| Sbjct: 1808561 ttgtcagagacgatgtacccacccttctcaacaccctcaatcgaggtaccaggcagctga 1808620 Query: 552 ggaagcttttgcct 565 | |||||||||||| Sbjct: 1808621 gcaagcttttgcct 1808634
>dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0001H02 Length = 147160 Score = 321 bits (162), Expect = 1e-84 Identities = 366/434 (84%) Strand = Plus / Plus Query: 132 tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 191 |||||||||||||| |||| |||||||||||||| || |||||||| ||||||| |||| Sbjct: 8679 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 8738 Query: 192 atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 251 ||||| |||||||| || || ||||| ||||||||||| || | |||||| ||| Sbjct: 8739 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 8798 Query: 252 ccgacgtacttttgccatccgagggtagagccagcttcaatgctgatccttgcggtgaca 311 ||||||||||| |||||||| || ||||| || ||||||| ||||| ||||| || ||| Sbjct: 8799 ccgacgtacttctgccatccaagagtagaccctgcttcaaggctgactcttgcagtaaca 8858 Query: 312 gcctcagggagcacgctctccttgtattcatcggactgctcgtcaaaaagctcccagcag 371 ||||||||||| || ||||||||||| ||| | ||||| || || |||||||||||||| Sbjct: 8859 gcctcagggagaacactctccttgtactcagccgactgttcatcgaaaagctcccagcaa 8918 Query: 372 acaaatgacacaacgcggacggtcttcccctccttcgtcaactcttcggcagccttcaca 431 ||||||||||| || ||||| ||||||||||||||| ||||||| || |||||||| | Sbjct: 8919 acaaatgacacgacacggacagtcttcccctccttcctcaactcatcagcagccttggcg 8978 Query: 432 gcaatctctacttcagaaccagtgctcattatgatgtagtcaggcttgtttccactcgag 491 ||||||||| |||||| ||||||||||| | ||| ||||||||||||| ||| | ||| Sbjct: 8979 acaatctctagttcagagccagtgctcatcacaatgaagtcaggcttgttgccagttgag 9038 Query: 492 ttgtcggagatggtgtatccacccttcgcaacaccctcaattgaggtaccaggcagatga 551 ||||| |||| | |||| ||||||||| ||||||||||||| |||||||||||||| ||| Sbjct: 9039 ttgtcagagacgatgtacccacccttctcaacaccctcaatcgaggtaccaggcagctga 9098 Query: 552 ggaagcttttgcct 565 | |||||||||||| Sbjct: 9099 gcaagcttttgcct 9112
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0679C08 Length = 156266 Score = 321 bits (162), Expect = 1e-84 Identities = 366/434 (84%) Strand = Plus / Plus Query: 132 tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 191 |||||||||||||| |||| |||||||||||||| || |||||||| ||||||| |||| Sbjct: 133350 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 133409 Query: 192 atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 251 ||||| |||||||| || || ||||| ||||||||||| || | |||||| ||| Sbjct: 133410 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 133469 Query: 252 ccgacgtacttttgccatccgagggtagagccagcttcaatgctgatccttgcggtgaca 311 ||||||||||| |||||||| || ||||| || ||||||| ||||| ||||| || ||| Sbjct: 133470 ccgacgtacttctgccatccaagagtagaccctgcttcaaggctgactcttgcagtaaca 133529 Query: 312 gcctcagggagcacgctctccttgtattcatcggactgctcgtcaaaaagctcccagcag 371 ||||||||||| || ||||||||||| ||| | ||||| || || |||||||||||||| Sbjct: 133530 gcctcagggagaacactctccttgtactcagccgactgttcatcgaaaagctcccagcaa 133589 Query: 372 acaaatgacacaacgcggacggtcttcccctccttcgtcaactcttcggcagccttcaca 431 ||||||||||| || ||||| ||||||||||||||| ||||||| || |||||||| | Sbjct: 133590 acaaatgacacgacacggacagtcttcccctccttcctcaactcatcagcagccttggcg 133649 Query: 432 gcaatctctacttcagaaccagtgctcattatgatgtagtcaggcttgtttccactcgag 491 ||||||||| |||||| ||||||||||| | ||| ||||||||||||| ||| | ||| Sbjct: 133650 acaatctctagttcagagccagtgctcatcacaatgaagtcaggcttgttgccagttgag 133709 Query: 492 ttgtcggagatggtgtatccacccttcgcaacaccctcaattgaggtaccaggcagatga 551 ||||| |||| | |||| ||||||||| ||||||||||||| |||||||||||||| ||| Sbjct: 133710 ttgtcagagacgatgtacccacccttctcaacaccctcaatcgaggtaccaggcagctga 133769 Query: 552 ggaagcttttgcct 565 | |||||||||||| Sbjct: 133770 gcaagcttttgcct 133783
>dbj|AK119542.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-D07, full insert sequence Length = 1104 Score = 321 bits (162), Expect = 1e-84 Identities = 366/434 (84%) Strand = Plus / Minus Query: 132 tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 191 |||||||||||||| |||| |||||||||||||| || |||||||| ||||||| |||| Sbjct: 884 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 825 Query: 192 atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 251 ||||| |||||||| || || ||||| ||||||||||| || | |||||| ||| Sbjct: 824 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 765 Query: 252 ccgacgtacttttgccatccgagggtagagccagcttcaatgctgatccttgcggtgaca 311 ||||||||||| |||||||| || ||||| || ||||||| ||||| ||||| || ||| Sbjct: 764 ccgacgtacttctgccatccaagagtagaccctgcttcaaggctgactcttgcagtaaca 705 Query: 312 gcctcagggagcacgctctccttgtattcatcggactgctcgtcaaaaagctcccagcag 371 ||||||||||| || ||||||||||| ||| | ||||| || || |||||||||||||| Sbjct: 704 gcctcagggagaacactctccttgtactcagccgactgttcatcgaaaagctcccagcaa 645 Query: 372 acaaatgacacaacgcggacggtcttcccctccttcgtcaactcttcggcagccttcaca 431 ||||||||||| || ||||| ||||||||||||||| ||||||| || |||||||| | Sbjct: 644 acaaatgacacgacacggacagtcttcccctccttcctcaactcatcagcagccttggcg 585 Query: 432 gcaatctctacttcagaaccagtgctcattatgatgtagtcaggcttgtttccactcgag 491 ||||||||| |||||| ||||||||||| | ||| ||||||||||||| ||| | ||| Sbjct: 584 acaatctctagttcagagccagtgctcatcacaatgaagtcaggcttgttgccagttgag 525 Query: 492 ttgtcggagatggtgtatccacccttcgcaacaccctcaattgaggtaccaggcagatga 551 ||||| |||| | |||| ||||||||| ||||||||||||| |||||||||||||| ||| Sbjct: 524 ttgtcagagacgatgtacccacccttctcaacaccctcaatcgaggtaccaggcagctga 465 Query: 552 ggaagcttttgcct 565 | |||||||||||| Sbjct: 464 gcaagcttttgcct 451
>dbj|AK105053.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E06, full insert sequence Length = 2001 Score = 321 bits (162), Expect = 1e-84 Identities = 366/434 (84%) Strand = Plus / Minus Query: 132 tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 191 |||||||||||||| |||| |||||||||||||| || |||||||| ||||||| |||| Sbjct: 1719 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 1660 Query: 192 atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 251 ||||| |||||||| || || ||||| ||||||||||| || | |||||| ||| Sbjct: 1659 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 1600 Query: 252 ccgacgtacttttgccatccgagggtagagccagcttcaatgctgatccttgcggtgaca 311 ||||||||||| |||||||| || ||||| || ||||||| ||||| ||||| || ||| Sbjct: 1599 ccgacgtacttctgccatccaagagtagaccctgcttcaaggctgactcttgcagtaaca 1540 Query: 312 gcctcagggagcacgctctccttgtattcatcggactgctcgtcaaaaagctcccagcag 371 ||||||||||| || ||||||||||| ||| | ||||| || || |||||||||||||| Sbjct: 1539 gcctcagggagaacactctccttgtactcagccgactgttcatcgaaaagctcccagcaa 1480 Query: 372 acaaatgacacaacgcggacggtcttcccctccttcgtcaactcttcggcagccttcaca 431 ||||||||||| || ||||| ||||||||||||||| ||||||| || |||||||| | Sbjct: 1479 acaaatgacacgacacggacagtcttcccctccttcctcaactcatcagcagccttggcg 1420 Query: 432 gcaatctctacttcagaaccagtgctcattatgatgtagtcaggcttgtttccactcgag 491 ||||||||| |||||| ||||||||||| | ||| ||||||||||||| ||| | ||| Sbjct: 1419 acaatctctagttcagagccagtgctcatcacaatgaagtcaggcttgttgccagttgag 1360 Query: 492 ttgtcggagatggtgtatccacccttcgcaacaccctcaattgaggtaccaggcagatga 551 ||||| |||| | |||| ||||||||| ||||||||||||| |||||||||||||| ||| Sbjct: 1359 ttgtcagagacgatgtacccacccttctcaacaccctcaatcgaggtaccaggcagctga 1300 Query: 552 ggaagcttttgcct 565 | |||||||||||| Sbjct: 1299 gcaagcttttgcct 1286
>dbj|AK067452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107D17, full insert sequence Length = 2280 Score = 321 bits (162), Expect = 1e-84 Identities = 366/434 (84%) Strand = Plus / Minus Query: 132 tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 191 |||||||||||||| |||| |||||||||||||| || |||||||| ||||||| |||| Sbjct: 2040 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 1981 Query: 192 atcttgggggcaggagcgctggcgccgaacttgtcgatgccgatggtcttgcccttggac 251 ||||| |||||||| || || ||||| ||||||||||| || | |||||| ||| Sbjct: 1980 atctttccagcaggagcacttgcaccgaatttgtcgatgccaatagccttgcctttgctt 1921 Query: 252 ccgacgtacttttgccatccgagggtagagccagcttcaatgctgatccttgcggtgaca 311 ||||||||||| |||||||| || ||||| || ||||||| ||||| ||||| || ||| Sbjct: 1920 ccgacgtacttctgccatccaagagtagaccctgcttcaaggctgactcttgcagtaaca 1861 Query: 312 gcctcagggagcacgctctccttgtattcatcggactgctcgtcaaaaagctcccagcag 371 ||||||||||| || ||||||||||| ||| | ||||| || || |||||||||||||| Sbjct: 1860 gcctcagggagaacactctccttgtactcagccgactgttcatcgaaaagctcccagcaa 1801 Query: 372 acaaatgacacaacgcggacggtcttcccctccttcgtcaactcttcggcagccttcaca 431 ||||||||||| || ||||| ||||||||||||||| ||||||| || |||||||| | Sbjct: 1800 acaaatgacacgacacggacagtcttcccctccttcctcaactcatcagcagccttggcg 1741 Query: 432 gcaatctctacttcagaaccagtgctcattatgatgtagtcaggcttgtttccactcgag 491 ||||||||| |||||| ||||||||||| | ||| ||||||||||||| ||| | ||| Sbjct: 1740 acaatctctagttcagagccagtgctcatcacaatgaagtcaggcttgttgccagttgag 1681 Query: 492 ttgtcggagatggtgtatccacccttcgcaacaccctcaattgaggtaccaggcagatga 551 ||||| |||| | |||| ||||||||| ||||||||||||| |||||||||||||| ||| Sbjct: 1680 ttgtcagagacgatgtacccacccttctcaacaccctcaatcgaggtaccaggcagctga 1621 Query: 552 ggaagcttttgcct 565 | |||||||||||| Sbjct: 1620 gcaagcttttgcct 1607
>gb|BT016698.1| Zea mays clone Contig531 mRNA sequence Length = 1691 Score = 244 bits (123), Expect = 3e-61 Identities = 327/395 (82%) Strand = Plus / Minus Query: 171 gtgatgccgtactccttgtagatcttgggggcaggagcgctggcgccgaacttgtcgatg 230 |||||||||||||||||||||||| | ||||||||| || |||||||||||||||||| Sbjct: 1195 gtgatgccgtactccttgtagatcgtcccggcaggagcactcgcgccgaacttgtcgatg 1136 Query: 231 ccgatggtcttgcccttggacccgacgtacttttgccatccgagggtagagccagcttca 290 || |||| |||||||| || ||||||||||| ||||| || || || || ||||| ||| Sbjct: 1135 ccaatggccttgccctgggctccgacgtacttctgccagccaagagtggacccagcctca 1076 Query: 291 atgctgatccttgcggtgacagcctcagggagcacgctctccttgtattcatcggactgc 350 ||||||||||| || ||||| || ||||||| |||||||||||||| ||||| |||||| Sbjct: 1075 atgctgatcctcgctgtgacggcagcagggaggacgctctccttgtactcatccgactgc 1016 Query: 351 tcgtcaaaaagctcccagcagacaaatgacacaacgcggacggtcttcccctccttcgtc 410 || ||||| || |||||| |||| || || || |||||||| ||||| ||||||||| || Sbjct: 1015 tcatcaaagagttcccaggagacgaacgagacgacgcggaccgtcttgccctccttcctc 956 Query: 411 aactcttcggcagccttcacagcaatctctacttcagaaccagtgctcattatgatgtag 470 | ||| ||||| ||||| | || ||||| | || || || |||| ||| | ||| | Sbjct: 955 agctcgtcggcggccttggccgcgatctccagctcggagccggtgcccatcacaatgagg 896 Query: 471 tcaggcttgtttccactcgagttgtcggagatggtgtatccacccttcgcaacaccctca 530 ||||||||||| ||| |||||||||||||||||||||| || |||||| | || ||||| Sbjct: 895 tcaggcttgttgccagtcgagttgtcggagatggtgtacccgcccttctccacgccctcg 836 Query: 531 attgaggtaccaggcagatgaggaagcttttgcct 565 || ||||| |||||||| ||||| ||||||||||| Sbjct: 835 atcgaggtgccaggcaggtgagggagcttttgcct 801
>gb|AY148193.1| Synthetic construct thioredoxin/transketolase fusion protein gene, complete cds Length = 2415 Score = 236 bits (119), Expect = 6e-59 Identities = 326/395 (82%) Strand = Plus / Minus Query: 171 gtgatgccgtactccttgtagatcttgggggcaggagcgctggcgccgaacttgtcgatg 230 |||||||||||||||||||||||| | ||||||||| || |||||||||||||||||| Sbjct: 2378 gtgatgccgtactccttgtagatcgtcccggcaggagcactcgcgccgaacttgtcgatg 2319 Query: 231 ccgatggtcttgcccttggacccgacgtacttttgccatccgagggtagagccagcttca 290 || |||| |||||||| || ||||||||||| ||||| ||||| || || || || || Sbjct: 2318 ccaatggccttgccctgggctccgacgtacttctgccagccgagagtggacccggcctcg 2259 Query: 291 atgctgatccttgcggtgacagcctcagggagcacgctctccttgtattcatcggactgc 350 ||||||||||| || ||||| || ||||||| |||||||||||||| ||||| |||||| Sbjct: 2258 atgctgatcctcgctgtgacggcggcagggaggacgctctccttgtactcatccgactgc 2199 Query: 351 tcgtcaaaaagctcccagcagacaaatgacacaacgcggacggtcttcccctccttcgtc 410 || ||||| || |||||| |||| || || || |||||||| ||||||||||||||| || Sbjct: 2198 tcatcaaagagttcccaggagacgaacgagacgacgcggaccgtcttcccctccttcctc 2139 Query: 411 aactcttcggcagccttcacagcaatctctacttcagaaccagtgctcattatgatgtag 470 | ||| ||||| ||||| | || ||||| | || || || |||| ||| | ||| | Sbjct: 2138 agctcgtcggcggccttggccgcgatctccagctcggagccggtgcccatcacaatgagg 2079 Query: 471 tcaggcttgtttccactcgagttgtcggagatggtgtatccacccttcgcaacaccctca 530 ||||||||||| || |||||||||||||||||||||| || |||||| | || ||||| Sbjct: 2078 tcaggcttgttgccggtcgagttgtcggagatggtgtacccgcccttctccacgccctcg 2019 Query: 531 attgaggtaccaggcagatgaggaagcttttgcct 565 || ||||| |||||||| ||||| ||||||||||| Sbjct: 2018 atcgaggtgccaggcaggtgagggagcttttgcct 1984
>dbj|AB066206.1| Polygonum tinctorium mRNA for transketolase, complete cds Length = 2065 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 327 ctctccttgtattcatcggactgctcgtcaaaaagctcccagcagacaaatgacac 382 ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||||| Sbjct: 1681 ctctccttgtactcatcagactgctcctcaaacagctcccagcacacaaatgacac 1626
>gb|AC146329.19| Medicago truncatula clone mth2-5i21, complete sequence Length = 142834 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 316 cagggagcacgctctccttgtattcatcggactgctcgtcaaaaagctcccagc 369 ||||||| || ||||||||||||||||| ||||| || |||||||| ||||||| Sbjct: 40859 cagggagaacactctccttgtattcatctgactgatcatcaaaaagttcccagc 40912
>ref|NM_115939.2| Arabidopsis thaliana transketolase AT3G60750 mRNA, complete cds Length = 2839 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 327 ctctccttgtattcatcggactgctcgtcaaaaagctcccagca 370 ||||||||||||||||| || ||||||||||| || |||||||| Sbjct: 2315 ctctccttgtattcatctgattgctcgtcaaatagttcccagca 2272
>gb|AY133860.1| Arabidopsis thaliana clone U19695 putative transketolase (At3g60750) mRNA, complete cds Length = 2257 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 327 ctctccttgtattcatcggactgctcgtcaaaaagctcccagca 370 ||||||||||||||||| || ||||||||||| || |||||||| Sbjct: 2030 ctctccttgtattcatctgattgctcgtcaaatagttcccagca 1987
>gb|AY091094.1| Arabidopsis thaliana putative transketolase (At3g60750) mRNA, complete cds Length = 2611 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 327 ctctccttgtattcatcggactgctcgtcaaaaagctcccagca 370 ||||||||||||||||| || ||||||||||| || |||||||| Sbjct: 2111 ctctccttgtattcatctgattgctcgtcaaatagttcccagca 2068
>gb|AF424631.1|AF424631 Arabidopsis thaliana AT3g60750/T4C21_160 mRNA, complete cds Length = 2528 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 327 ctctccttgtattcatcggactgctcgtcaaaaagctcccagca 370 ||||||||||||||||| || ||||||||||| || |||||||| Sbjct: 2110 ctctccttgtattcatctgattgctcgtcaaatagttcccagca 2067
>emb|BX825521.1|CNS0A7MT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL42ZA07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 796 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 327 ctctccttgtattcatcggactgctcgtcaaaaagctcccagca 370 ||||||||||||||||| || ||||||||||| || |||||||| Sbjct: 473 ctctccttgtattcatctgattgctcgtcaaatagttcccagca 430
>emb|BX824324.1|CNS0A5SX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH3ZE10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 796 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 327 ctctccttgtattcatcggactgctcgtcaaaaagctcccagca 370 ||||||||||||||||| || ||||||||||| || |||||||| Sbjct: 473 ctctccttgtattcatctgattgctcgtcaaatagttcccagca 430
>gb|BT003331.1| Arabidopsis thaliana Unknown protein mRNA, complete cds Length = 2561 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 327 ctctccttgtattcatcggactgctcgtcaaaaagctcccagca 370 ||||||||||||||||| || ||||||||||| || |||||||| Sbjct: 2111 ctctccttgtattcatctgattgctcgtcaaatagttcccagca 2068
>gb|AY085542.1| Arabidopsis thaliana clone 15659 mRNA, complete sequence Length = 2614 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 327 ctctccttgtattcatcggactgctcgtcaaaaagctcccagca 370 ||||||||||||||||| || ||||||||||| || |||||||| Sbjct: 2167 ctctccttgtattcatctgattgctcgtcaaatagttcccagca 2124
>emb|AL162295.1|ATT4C21 Arabidopsis thaliana DNA chromosome 3, BAC clone T4C21 Length = 107865 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 327 ctctccttgtattcatcggactgctcgtcaaaaagctcccagca 370 ||||||||||||||||| || ||||||||||| || |||||||| Sbjct: 57886 ctctccttgtattcatctgattgctcgtcaaatagttcccagca 57843
>ref|NM_130092.2| Arabidopsis thaliana transketolase AT2G45290 mRNA, complete cds Length = 2598 Score = 48.1 bits (24), Expect = 0.032 Identities = 48/56 (85%) Strand = Plus / Minus Query: 330 tccttgtattcatcggactgctcgtcaaaaagctcccagcagacaaatgacacaac 385 ||||||||| |||| || |||||||| ||||||||||| || ||||| || ||||| Sbjct: 2082 tccttgtatgcatctgattgctcgtcgaaaagctcccaacatacaaaggaaacaac 2027
>gb|AC002387.3| Arabidopsis thaliana chromosome 2 clone F4L23 map CIC02E07, complete sequence Length = 122928 Score = 48.1 bits (24), Expect = 0.032 Identities = 48/56 (85%) Strand = Plus / Plus Query: 330 tccttgtattcatcggactgctcgtcaaaaagctcccagcagacaaatgacacaac 385 ||||||||| |||| || |||||||| ||||||||||| || ||||| || ||||| Sbjct: 72548 tccttgtatgcatctgattgctcgtcgaaaagctcccaacatacaaaggaaacaac 72603
>gb|AY078964.1| Arabidopsis thaliana At2g45290/F4L23.20 mRNA, complete sequence Length = 2581 Score = 48.1 bits (24), Expect = 0.032 Identities = 48/56 (85%) Strand = Plus / Minus Query: 330 tccttgtattcatcggactgctcgtcaaaaagctcccagcagacaaatgacacaac 385 ||||||||| |||| || |||||||| ||||||||||| || ||||| || ||||| Sbjct: 2067 tccttgtatgcatctgattgctcgtcgaaaagctcccaacatacaaaggaaacaac 2012
>gb|AY057528.1| Arabidopsis thaliana At2g45290/F4L23.20 mRNA, complete cds Length = 2206 Score = 48.1 bits (24), Expect = 0.032 Identities = 48/56 (85%) Strand = Plus / Minus Query: 330 tccttgtattcatcggactgctcgtcaaaaagctcccagcagacaaatgacacaac 385 ||||||||| |||| || |||||||| ||||||||||| || ||||| || ||||| Sbjct: 1868 tccttgtatgcatctgattgctcgtcgaaaagctcccaacatacaaaggaaacaac 1813
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 355 caaaaagctcccagcagacaaat 377 ||||||||||||||||||||||| Sbjct: 1510792 caaaaagctcccagcagacaaat 1510814
>emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen allergen Lol p 4 Length = 1272 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Minus Query: 154 cgatgacgttctctgcagtgatgccgtact 183 |||||||||||||||| | ||||||||||| Sbjct: 338 cgatgacgttctctgcggcgatgccgtact 309
>ref|XM_765191.1| Giardia lamblia ATCC 50803 glyceraldehyde 3-phosphate dehydrogenase (GLP_80_19533_18523) partial mRNA Length = 1011 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 242 gcccttggacccgacgtacttt 263 |||||||||||||||||||||| Sbjct: 1005 gcccttggacccgacgtacttt 984
>emb|AL356796.16| Human DNA sequence from clone RP11-82I1 on chromosome 9 Contains the 3' end of a novel gene (FLJ11985, MGC11337) (KIAA0870), the ORM1 gene for orosomucoid 1 (AGP1, AGP-A), the ORM2 gene for orosomucoid 2 (AGP2, AGP-B) and the gene for AT-hook transcription factor AKNA, complete sequence Length = 125673 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 127 gctggtcttacaggctcttggctgcg 152 |||||||||||||| ||||||||||| Sbjct: 39266 gctggtcttacaggttcttggctgcg 39241
>dbj|AK220725.1| Arabidopsis thaliana mRNA for putative transketolase precursor, partial cds, clone: RAFL22-06-F18 Length = 406 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Minus Query: 330 tccttgtattcatcggactgctcgtcaaaaagctccca 367 ||||||||| |||| || |||||||| ||||||||||| Sbjct: 42 tccttgtatgcatctgattgctcgtcgaaaagctccca 5
>gb|M88062.1|GIAGLYALPH Giardia intestinalis glyceraldehyde 3-phosphate dehydrogenase (gap1) gene, complete cds Length = 1178 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 242 gcccttggacccgacgtacttt 263 |||||||||||||||||||||| Sbjct: 1161 gcccttggacccgacgtacttt 1140
>ref|XM_322348.1| Neurospora crassa OR74A hypothetical protein (NCU00263.1) partial mRNA Length = 2631 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 gccgatggtcttgcccttgga 250 ||||||||||||||||||||| Sbjct: 2403 gccgatggtcttgcccttgga 2383
>ref|XM_952641.1| Neurospora crassa OR74A hypothetical protein (NCU00263.1) partial mRNA Length = 2631 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 gccgatggtcttgcccttgga 250 ||||||||||||||||||||| Sbjct: 2403 gccgatggtcttgcccttgga 2383
>gb|AE009185.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 211 of 256 of the complete sequence Length = 12100 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 atgccgatggtcttgcccttg 248 ||||||||||||||||||||| Sbjct: 4337 atgccgatggtcttgcccttg 4357
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 ctctgcagtgatgccgtactc 184 ||||||||||||||||||||| Sbjct: 330738 ctctgcagtgatgccgtactc 330758
>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence Length = 250948 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 gatgccgatggtcttgccctt 247 ||||||||||||||||||||| Sbjct: 171928 gatgccgatggtcttgccctt 171908
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 atgccgatggtcttgcccttg 248 ||||||||||||||||||||| Sbjct: 2340060 atgccgatggtcttgcccttg 2340080
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 gcgccgaacttgtcgatgccgatgg 237 ||||||||| ||||||||||||||| Sbjct: 2085843 gcgccgaacgtgtcgatgccgatgg 2085867
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 152 ggcgatgacgttctctgcagtgatgccg 179 ||||||||||| ||| |||||||||||| Sbjct: 119991 ggcgatgacgtactcagcagtgatgccg 120018
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 224 gtcgatgccgatggtcttgccctt 247 ||||| |||||||||||||||||| Sbjct: 3108742 gtcgacgccgatggtcttgccctt 3108765
>emb|CT009527.5| Mouse DNA sequence from clone RP23-25D11 on chromosome 13, complete sequence Length = 226804 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 caatctctacttcagaacca 452 |||||||||||||||||||| Sbjct: 32646 caatctctacttcagaacca 32627
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 atgccgatggtcttgccctt 247 |||||||||||||||||||| Sbjct: 1345343 atgccgatggtcttgccctt 1345324
>ref|XM_784712.1| PREDICTED: Strongylocentrotus purpuratus similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (LOC584867), partial mRNA Length = 1545 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 catcctcctctccctccgtt 43 |||||||||||||||||||| Sbjct: 585 catcctcctctccctccgtt 566
>gb|AC126122.2| Homo sapiens chromosome 3 clone RP11-751K5, complete sequence Length = 3917 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ttccaagctttctgggcacg 64 |||||||||||||||||||| Sbjct: 2973 ttccaagctttctgggcacg 2954
>gb|AC099665.2| Homo sapiens chromosome 3 clone RP11-15B21, complete sequence Length = 192063 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ttccaagctttctgggcacg 64 |||||||||||||||||||| Sbjct: 830 ttccaagctttctgggcacg 811
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 cgaacttgtcgatgccgatg 236 |||||||||||||||||||| Sbjct: 2234310 cgaacttgtcgatgccgatg 2234329
>dbj|AK110336.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-164-E12, full insert sequence Length = 2492 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 201 gcaggagcgctggcgccgaacttgtcgatgcc 232 ||||| |||||||||||||| | ||||||||| Sbjct: 2107 gcaggtgcgctggcgccgaaatcgtcgatgcc 2076
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 tgccgatggtcttgcccttg 248 |||||||||||||||||||| Sbjct: 5534504 tgccgatggtcttgcccttg 5534485
>emb|AL161747.5|CNS01RHF Human chromosome 14 DNA sequence BAC R-689J19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 170588 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tcctcctctccctccgttat 45 |||||||||||||||||||| Sbjct: 25608 tcctcctctccctccgttat 25589
>gb|AC159644.3| Mus musculus BAC clone RP23-358A18 from chromosome 12, complete sequence Length = 196310 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 tgtagtcaggcttgtttcca 485 |||||||||||||||||||| Sbjct: 113862 tgtagtcaggcttgtttcca 113881 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,993,860 Number of Sequences: 3902068 Number of extensions: 3993860 Number of successful extensions: 78007 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77690 Number of HSP's gapped (non-prelim): 309 length of query: 569 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 546 effective length of database: 17,143,297,704 effective search space: 9360240546384 effective search space used: 9360240546384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)