| Clone Name | rbasd16i14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY596527.1| Saccharum officinarum clone SCCCLB1004G11, complete sequence Length = 1189 Score = 335 bits (169), Expect = 9e-89 Identities = 297/337 (88%), Gaps = 2/337 (0%) Strand = Plus / Plus Query: 230 tcctcgtcctggtgagcaactttcttccgcaacactttctcaaaatcaatcttttccacg 289 ||||| ||||||||||||| ||||| |||||||| |||||||| ||||||||||| | Sbjct: 325 tcctcatcctggtgagcaaacttcttgcgcaacaccttctcaaactcaatcttttcaaga 384 Query: 290 ggcttggcattctcaacagcgtgtgccttggctaagttggaatagttggcagccgactcc 349 ||||||||||||||| |||| || ||||||| | |||||||||||||||| |||||| Sbjct: 385 ggcttggcattctcatcagcatgcgccttggacagactggaatagttggcagctgactcc 444 Query: 350 gctataaaagcaatctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccc 409 || |||||||| ||||| |||||||||||||||||||||||||| || ||||| |||||| Sbjct: 445 gcaataaaagcgatctcgtcatctgtgagcttcctcagaaatttggcggggttcccaccc 504 Query: 410 catacctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatc 469 ||||||||||||||||||||||| |||||||||| ||| |||||||| ||||| |||||| Sbjct: 505 catacctctccacaagggatcctagtattctgtcgtacgagggctccagcagctaccatc 564 Query: 470 ccatgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagcttca 529 || |||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| ||| Sbjct: 565 ccgtgcttttcaacaacgacaccatctaatagggttgcccccatgccaacaaaagcctca 624 Query: 530 ttcctcaacagtggcatccttgtaatacagcactatg 566 |||||||| || |||||||||||| ||||||||||| Sbjct: 625 -tcctcaaccgt-gcatccttgtaacacagcactatg 659
>gb|BT017158.1| Zea mays clone EL01N0368A12.c mRNA sequence Length = 1060 Score = 289 bits (146), Expect = 5e-75 Identities = 289/334 (86%), Gaps = 2/334 (0%) Strand = Plus / Minus Query: 230 tcctcgtcctggtgagcaactttcttccgcaacactttctcaaaatcaatcttttccacg 289 ||||| ||||||||||||| ||||| || ||||| |||||||| ||||||||||| | Sbjct: 800 tcctcatcctggtgagcaaacttcttgcgtaacaccttctcaaactcaatcttttcaaga 741 Query: 290 ggcttggcattctcaacagcgtgtgccttggctaagttggaatagttggcagccgactcc 349 |||||||||||||| |||| || |||||| | ||||||||||||| ||| || ||| Sbjct: 740 ggcttggcattctcggcagcatgcaccttggacagattggaatagttggaagctgattcc 681 Query: 350 gctataaaagcaatctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccc 409 | ||||| || ||||| |||||||||||||||||||||||||| || ||||| || ||| Sbjct: 680 gtgataaatgcgatctcgtcatctgtgagcttcctcagaaatttggcagggttccctccc 621 Query: 410 catacctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatc 469 ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||| Sbjct: 620 catacctctccacaagggatcctagtattctgtcttacaagggatcctgcagctaccatc 561 Query: 470 ccatgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagcttca 529 ||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| ||| Sbjct: 560 ccatgcttttcaacaacgacaccatctaatagggttgcccccatgccaacaaaagcctca 501 Query: 530 ttcctcaacagtggcatccttgtaatacagcact 563 |||||||| || |||||||||||| |||||||| Sbjct: 500 -tcctcaaccgt-gcatccttgtaacacagcact 469
>dbj|AK122051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114G12, full insert sequence Length = 1036 Score = 285 bits (144), Expect = 8e-74 Identities = 315/368 (85%), Gaps = 3/368 (0%) Strand = Plus / Minus Query: 199 tcccgagtggcaccaagcatggnaaccgtgttcctcgtcctggtgagcaactttcttccg 258 |||||||| ||||||| ||| | || |||||||||| |||||||||||| ||||| || Sbjct: 851 tcccgagtagcaccaatcattg-aatcgtgttcctcatcctggtgagcagacttcttgcg 793 Query: 259 caacactttctcaaaatcaatcttttccacgggcttggcattctcaacagcgtgtgcctt 318 |||| |||||||| ||| ||||||| || ||||||||||||||| |||| || ||||| Sbjct: 792 gaacagcttctcaaattcagtcttttcaacaggcttggcattctcagcagcatgggcctt 733 Query: 319 ggctaagttggaatagttggcagccgactccgctataaaagcaatctcctcatctgtgag 378 || | |||||||||| | ||| || || ||||| | |||||| ||||| ||||| Sbjct: 732 tgccagagtggaatagttagaagctgattctttgataaacgtaatctcgtcatcagtgag 673 Query: 379 cttcctcagaaatttcgctgggtttccaccccatacctctccacaagggatccttgtatt 438 ||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||| || Sbjct: 672 cttcctcaggaatttggcagggtttcctccccatacctctccacaggggatccttgtgtt 613 Query: 439 ctgtcttacaagggctccggcagcaaccatcccatgcttttctacaacaacaccatctaa 498 |||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| Sbjct: 612 ctgtcttacaagggctccagcagcaaccatcccatgcttttccacgacaacaccatctaa 553 Query: 499 cagggttgctcccataccaacaaaagcttcattcctcaacagtggcatccttgtaataca 558 |||||| || |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 552 cagggtcgcccccataccaacaaatgcttc-gtcctcaacagt-acatccttgtaataca 495 Query: 559 gcactatg 566 |||||||| Sbjct: 494 gcactatg 487
>dbj|AK104205.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-F03, full insert sequence Length = 1086 Score = 285 bits (144), Expect = 8e-74 Identities = 315/368 (85%), Gaps = 3/368 (0%) Strand = Plus / Minus Query: 199 tcccgagtggcaccaagcatggnaaccgtgttcctcgtcctggtgagcaactttcttccg 258 |||||||| ||||||| ||| | || |||||||||| |||||||||||| ||||| || Sbjct: 901 tcccgagtagcaccaatcattg-aatcgtgttcctcatcctggtgagcagacttcttgcg 843 Query: 259 caacactttctcaaaatcaatcttttccacgggcttggcattctcaacagcgtgtgcctt 318 |||| |||||||| ||| ||||||| || ||||||||||||||| |||| || ||||| Sbjct: 842 gaacagcttctcaaattcagtcttttcaacaggcttggcattctcagcagcatgggcctt 783 Query: 319 ggctaagttggaatagttggcagccgactccgctataaaagcaatctcctcatctgtgag 378 || | |||||||||| | ||| || || ||||| | |||||| ||||| ||||| Sbjct: 782 tgccagagtggaatagttagaagctgattctttgataaacgtaatctcgtcatcagtgag 723 Query: 379 cttcctcagaaatttcgctgggtttccaccccatacctctccacaagggatccttgtatt 438 ||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||| || Sbjct: 722 cttcctcaggaatttggcagggtttcctccccatacctctccacaggggatccttgtgtt 663 Query: 439 ctgtcttacaagggctccggcagcaaccatcccatgcttttctacaacaacaccatctaa 498 |||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| Sbjct: 662 ctgtcttacaagggctccagcagcaaccatcccatgcttttccacgacaacaccatctaa 603 Query: 499 cagggttgctcccataccaacaaaagcttcattcctcaacagtggcatccttgtaataca 558 |||||| || |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 602 cagggtcgcccccataccaacaaatgcttc-gtcctcaacagt-acatccttgtaataca 545 Query: 559 gcactatg 566 |||||||| Sbjct: 544 gcactatg 537
>dbj|AK071713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109L19, full insert sequence Length = 1156 Score = 285 bits (144), Expect = 8e-74 Identities = 315/368 (85%), Gaps = 3/368 (0%) Strand = Plus / Minus Query: 199 tcccgagtggcaccaagcatggnaaccgtgttcctcgtcctggtgagcaactttcttccg 258 |||||||| ||||||| ||| | || |||||||||| |||||||||||| ||||| || Sbjct: 893 tcccgagtagcaccaatcattg-aatcgtgttcctcatcctggtgagcagacttcttgcg 835 Query: 259 caacactttctcaaaatcaatcttttccacgggcttggcattctcaacagcgtgtgcctt 318 |||| |||||||| ||| ||||||| || ||||||||||||||| |||| || ||||| Sbjct: 834 gaacagcttctcaaattcagtcttttcaacaggcttggcattctcagcagcatgggcctt 775 Query: 319 ggctaagttggaatagttggcagccgactccgctataaaagcaatctcctcatctgtgag 378 || | |||||||||| | ||| || || ||||| | |||||| ||||| ||||| Sbjct: 774 tgccagagtggaatagttagaagctgattctttgataaacgtaatctcgtcatcagtgag 715 Query: 379 cttcctcagaaatttcgctgggtttccaccccatacctctccacaagggatccttgtatt 438 ||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||| || Sbjct: 714 cttcctcaggaatttggcagggtttcctccccatacctctccacaggggatccttgtgtt 655 Query: 439 ctgtcttacaagggctccggcagcaaccatcccatgcttttctacaacaacaccatctaa 498 |||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| Sbjct: 654 ctgtcttacaagggctccagcagcaaccatcccatgcttttccacgacaacaccatctaa 595 Query: 499 cagggttgctcccataccaacaaaagcttcattcctcaacagtggcatccttgtaataca 558 |||||| || |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 594 cagggtcgcccccataccaacaaatgcttc-gtcctcaacagt-acatccttgtaataca 537 Query: 559 gcactatg 566 |||||||| Sbjct: 536 gcactatg 529
>dbj|AK060908.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F08, full insert sequence Length = 1086 Score = 285 bits (144), Expect = 8e-74 Identities = 315/368 (85%), Gaps = 3/368 (0%) Strand = Plus / Minus Query: 199 tcccgagtggcaccaagcatggnaaccgtgttcctcgtcctggtgagcaactttcttccg 258 |||||||| ||||||| ||| | || |||||||||| |||||||||||| ||||| || Sbjct: 901 tcccgagtagcaccaatcattg-aatcgtgttcctcatcctggtgagcagacttcttgcg 843 Query: 259 caacactttctcaaaatcaatcttttccacgggcttggcattctcaacagcgtgtgcctt 318 |||| |||||||| ||| ||||||| || ||||||||||||||| |||| || ||||| Sbjct: 842 gaacagcttctcaaattcagtcttttcaacaggcttggcattctcagcagcatgggcctt 783 Query: 319 ggctaagttggaatagttggcagccgactccgctataaaagcaatctcctcatctgtgag 378 || | |||||||||| | ||| || || ||||| | |||||| ||||| ||||| Sbjct: 782 tgccagagtggaatagttagaagctgattctttgataaacgtaatctcgtcatcagtgag 723 Query: 379 cttcctcagaaatttcgctgggtttccaccccatacctctccacaagggatccttgtatt 438 ||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||| || Sbjct: 722 cttcctcaggaatttggcagggtttcctccccatacctctccacaggggatccttgtgtt 663 Query: 439 ctgtcttacaagggctccggcagcaaccatcccatgcttttctacaacaacaccatctaa 498 |||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| Sbjct: 662 ctgtcttacaagggctccagcagcaaccatcccatgcttttccacgacaacaccatctaa 603 Query: 499 cagggttgctcccataccaacaaaagcttcattcctcaacagtggcatccttgtaataca 558 |||||| || |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 602 cagggtcgcccccataccaacaaatgcttc-gtcctcaacagt-acatccttgtaataca 545 Query: 559 gcactatg 566 |||||||| Sbjct: 544 gcactatg 537
>gb|AY105930.1| Zea mays PCO135569 mRNA sequence Length = 1279 Score = 260 bits (131), Expect = 4e-66 Identities = 283/331 (85%), Gaps = 2/331 (0%) Strand = Plus / Minus Query: 236 tcctggtgagcaactttcttccgcaacactttctcaaaatcaatcttttccacgggcttg 295 ||||||||||||| ||||| | |||||| |||||||| ||||||||||| | || ||| Sbjct: 838 tcctggtgagcaaacttcttgcccaacaccttctcaaactcaatcttttcaagaggtttg 779 Query: 296 gcattctcaacagcgtgtgccttggctaagttggaatagttggcagccgactccgctata 355 ||||||||| |||| || |||||| | ||||||||||||||||| || ||||| || Sbjct: 778 gcattctcagcagcatggaccttggacagattggaatagttggcagctgattccgcaatg 719 Query: 356 aaagcaatctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccatacc 415 ||| ||||| |||||||||||||||||||||||||| || ||||| || ||||||||| Sbjct: 718 aaactgatctcgtcatctgtgagcttcctcagaaatttggcagggttccctccccatacc 659 Query: 416 tctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatcccatgc 475 ||||||||||||||||| |||||||| | ||| |||||||| ||||| ||||| || ||| Sbjct: 658 tctccacaagggatcctagtattctgccgtacgagggctccagcagccaccattccgtgc 599 Query: 476 ttttctacaacaacaccatctaacagggttgctcccataccaacaaaagcttcattcctc 535 ||||| ||||||||||||||||| |||||||| || || ||||||||||| ||| ||||| Sbjct: 598 ttttcaacaacaacaccatctaatagggttgccccaatgccaacaaaagcctca-tcctc 540 Query: 536 aacagtggcatccttgtaatacagcactatg 566 ||| || |||||||||||| ||||||||||| Sbjct: 539 aaccgt-gcatccttgtaacacagcactatg 510
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 194 bits (98), Expect = 2e-46 Identities = 142/154 (92%), Gaps = 2/154 (1%) Strand = Plus / Minus Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 10121038 acctctccacaggggatccttgtgttctgtcttacaagggctccagcagcaaccatccca 10120979 Query: 473 tgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagcttcattc 532 |||||||| || |||||||||||||||||||| || |||||||||||||| ||||| || Sbjct: 10120978 tgcttttccacgacaacaccatctaacagggtcgcccccataccaacaaatgcttc-gtc 10120920 Query: 533 ctcaacagtggcatccttgtaatacagcactatg 566 ||||||||| ||||||||||||||||||||||| Sbjct: 10120919 ctcaacagt-acatccttgtaatacagcactatg 10120887 Score = 99.6 bits (50), Expect = 1e-17 Identities = 177/218 (81%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 199 tcccgagtggcaccaagcatggnaaccgtgttcctcgtcctggtgagcaactttcttccg 258 |||||||| ||||||| ||| | || |||||||||| |||||||||||| ||||| || Sbjct: 10121569 tcccgagtagcaccaatcattg-aatcgtgttcctcatcctggtgagcagacttcttgcg 10121511 Query: 259 caacactttctcaaaatcaatcttttccacgggcttggcattctcaacagcgtgtgcctt 318 |||| |||||||| ||| ||||||| || ||||||||||||||| |||| || ||||| Sbjct: 10121510 gaacagcttctcaaattcagtcttttcaacaggcttggcattctcagcagcatgggcctt 10121451 Query: 319 ggctaagttggaatagttggcagccgactccgctataaaagcaatctcctcatctgtgag 378 || | |||||||||| | ||| || || ||||| | |||||| ||||| ||||| Sbjct: 10121450 tgccagagtggaatagttagaagctgattctttgataaacgtaatctcgtcatcagtgag 10121391 Query: 379 cttcctcagaaatttcgctgggtttccaccccatacct 416 ||||||||| ||||| || |||||||| |||||||||| Sbjct: 10121390 cttcctcaggaatttggcagggtttcctccccatacct 10121353 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 ctttctcaaaatcaatcttt 283 |||||||||||||||||||| Sbjct: 9481999 ctttctcaaaatcaatcttt 9482018
>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0581F09 Length = 154248 Score = 194 bits (98), Expect = 2e-46 Identities = 142/154 (92%), Gaps = 2/154 (1%) Strand = Plus / Minus Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 68507 acctctccacaggggatccttgtgttctgtcttacaagggctccagcagcaaccatccca 68448 Query: 473 tgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagcttcattc 532 |||||||| || |||||||||||||||||||| || |||||||||||||| ||||| || Sbjct: 68447 tgcttttccacgacaacaccatctaacagggtcgcccccataccaacaaatgcttc-gtc 68389 Query: 533 ctcaacagtggcatccttgtaatacagcactatg 566 ||||||||| ||||||||||||||||||||||| Sbjct: 68388 ctcaacagt-acatccttgtaatacagcactatg 68356 Score = 99.6 bits (50), Expect = 1e-17 Identities = 177/218 (81%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 199 tcccgagtggcaccaagcatggnaaccgtgttcctcgtcctggtgagcaactttcttccg 258 |||||||| ||||||| ||| | || |||||||||| |||||||||||| ||||| || Sbjct: 69038 tcccgagtagcaccaatcattg-aatcgtgttcctcatcctggtgagcagacttcttgcg 68980 Query: 259 caacactttctcaaaatcaatcttttccacgggcttggcattctcaacagcgtgtgcctt 318 |||| |||||||| ||| ||||||| || ||||||||||||||| |||| || ||||| Sbjct: 68979 gaacagcttctcaaattcagtcttttcaacaggcttggcattctcagcagcatgggcctt 68920 Query: 319 ggctaagttggaatagttggcagccgactccgctataaaagcaatctcctcatctgtgag 378 || | |||||||||| | ||| || || ||||| | |||||| ||||| ||||| Sbjct: 68919 tgccagagtggaatagttagaagctgattctttgataaacgtaatctcgtcatcagtgag 68860 Query: 379 cttcctcagaaatttcgctgggtttccaccccatacct 416 ||||||||| ||||| || |||||||| |||||||||| Sbjct: 68859 cttcctcaggaatttggcagggtttcctccccatacct 68822
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004B13 Length = 142268 Score = 194 bits (98), Expect = 2e-46 Identities = 142/154 (92%), Gaps = 2/154 (1%) Strand = Plus / Minus Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 45637 acctctccacaggggatccttgtgttctgtcttacaagggctccagcagcaaccatccca 45578 Query: 473 tgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagcttcattc 532 |||||||| || |||||||||||||||||||| || |||||||||||||| ||||| || Sbjct: 45577 tgcttttccacgacaacaccatctaacagggtcgcccccataccaacaaatgcttc-gtc 45519 Query: 533 ctcaacagtggcatccttgtaatacagcactatg 566 ||||||||| ||||||||||||||||||||||| Sbjct: 45518 ctcaacagt-acatccttgtaatacagcactatg 45486 Score = 99.6 bits (50), Expect = 1e-17 Identities = 177/218 (81%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 199 tcccgagtggcaccaagcatggnaaccgtgttcctcgtcctggtgagcaactttcttccg 258 |||||||| ||||||| ||| | || |||||||||| |||||||||||| ||||| || Sbjct: 46168 tcccgagtagcaccaatcattg-aatcgtgttcctcatcctggtgagcagacttcttgcg 46110 Query: 259 caacactttctcaaaatcaatcttttccacgggcttggcattctcaacagcgtgtgcctt 318 |||| |||||||| ||| ||||||| || ||||||||||||||| |||| || ||||| Sbjct: 46109 gaacagcttctcaaattcagtcttttcaacaggcttggcattctcagcagcatgggcctt 46050 Query: 319 ggctaagttggaatagttggcagccgactccgctataaaagcaatctcctcatctgtgag 378 || | |||||||||| | ||| || || ||||| | |||||| ||||| ||||| Sbjct: 46049 tgccagagtggaatagttagaagctgattctttgataaacgtaatctcgtcatcagtgag 45990 Query: 379 cttcctcagaaatttcgctgggtttccaccccatacct 416 ||||||||| ||||| || |||||||| |||||||||| Sbjct: 45989 cttcctcaggaatttggcagggtttcctccccatacct 45952
>ref|NM_187710.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 774 Score = 141 bits (71), Expect = 3e-30 Identities = 109/119 (91%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 448 aagggctccggcagcaaccatcccatgcttttctacaacaacaccatctaacagggttgc 507 ||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| || Sbjct: 504 aagggctccagcagcaaccatcccatgcttttccacgacaacaccatctaacagggtcgc 445 Query: 508 tcccataccaacaaaagcttcattcctcaacagtggcatccttgtaatacagcactatg 566 |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 444 ccccataccaacaaatgcttc-gtcctcaacagt-acatccttgtaatacagcactatg 388 Score = 99.6 bits (50), Expect = 1e-17 Identities = 177/218 (81%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 199 tcccgagtggcaccaagcatggnaaccgtgttcctcgtcctggtgagcaactttcttccg 258 |||||||| ||||||| ||| | || |||||||||| |||||||||||| ||||| || Sbjct: 734 tcccgagtagcaccaatcattg-aatcgtgttcctcatcctggtgagcagacttcttgcg 676 Query: 259 caacactttctcaaaatcaatcttttccacgggcttggcattctcaacagcgtgtgcctt 318 |||| |||||||| ||| ||||||| || ||||||||||||||| |||| || ||||| Sbjct: 675 gaacagcttctcaaattcagtcttttcaacaggcttggcattctcagcagcatgggcctt 616 Query: 319 ggctaagttggaatagttggcagccgactccgctataaaagcaatctcctcatctgtgag 378 || | |||||||||| | ||| || || ||||| | |||||| ||||| ||||| Sbjct: 615 tgccagagtggaatagttagaagctgattctttgataaacgtaatctcgtcatcagtgag 556 Query: 379 cttcctcagaaatttcgctgggtttccaccccatacct 416 ||||||||| ||||| || |||||||| |||||||||| Sbjct: 555 cttcctcaggaatttggcagggtttcctccccatacct 518
>gb|DQ284493.1| Solanum tuberosum clone 050G10 transcription factor APFI-like mRNA, complete cds Length = 1260 Score = 131 bits (66), Expect = 3e-27 Identities = 164/194 (84%), Gaps = 2/194 (1%) Strand = Plus / Minus Query: 373 tgtgagcttcctcagaaatttcgctgggtttccaccccatacctctccacaagggatcct 432 ||||||||||||||||||| | ||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 580 tgtgagcttcctcagaaatctagctggatttcctccccagacctctccacaaggaatcct 521 Query: 433 tgtattctgtcttacaagggctccggcagcaaccatcccatgcttttctacaacaacacc 492 |||||||| || |||||||| || || |||||||| ||| || || |||||||| || Sbjct: 520 cgtattctgcctgacaagggcaccagccgcaaccattgcatttttctccacaacaactcc 461 Query: 493 atctaacagggttgctcccataccaacaaaagcttcattcctcaacagtggcatccttgt 552 ||||| ||| ||||| |||||||||||||| || ||| || |||||||| ||||| ||| Sbjct: 460 atctagcagagttgcacccataccaacaaatgcctca-tcttcaacagt-acatccatgt 403 Query: 553 aatacagcactatg 566 || ||||||||||| Sbjct: 402 aagacagcactatg 389 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 230 tcctcgtcctggtgagcaactttcttccgcaacactttctcaaaatcaatc 280 |||||||| | | |||||| ||||||||||||||| |||||||| |||||| Sbjct: 723 tcctcgtctttgcgagcaaatttcttccgcaacaccttctcaaattcaatc 673
>ref|NM_101815.2| Arabidopsis thaliana unknown protein AT1G19580 mRNA, complete cds Length = 1357 Score = 117 bits (59), Expect = 4e-23 Identities = 122/143 (85%) Strand = Plus / Minus Query: 353 ataaaagcaatctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccat 412 ||||||||||| |||||||| ||||||||||| || || | ||||||||||| |||||| Sbjct: 773 ataaaagcaatttcctcatcagtgagcttcctgaggaaccttgctgggtttcctccccat 714 Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||| |||| || || || || |||| |||||| || || ||||||||||||||| Sbjct: 713 acctctccagaaggaattctggtgttttgtcgtacaagtgcaccagcagcaaccatccca 654 Query: 473 tgcttttctacaacaacaccatc 495 |||||||| ||||| || ||||| Sbjct: 653 tgcttttcaacaacgaccccatc 631
>gb|AY085025.1| Arabidopsis thaliana clone 12477 mRNA, complete sequence Length = 1337 Score = 117 bits (59), Expect = 4e-23 Identities = 122/143 (85%) Strand = Plus / Minus Query: 353 ataaaagcaatctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccat 412 ||||||||||| |||||||| ||||||||||| || || | ||||||||||| |||||| Sbjct: 775 ataaaagcaatttcctcatcagtgagcttcctgaggaaccttgctgggtttcctccccat 716 Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||| |||| || || || || |||| |||||| || || ||||||||||||||| Sbjct: 715 acctctccagaaggaattctggtgttttgtcgtacaagcgcaccagcagcaaccatccca 656 Query: 473 tgcttttctacaacaacaccatc 495 |||||||| ||||| || ||||| Sbjct: 655 tgcttttcaacaacgaccccatc 633
>dbj|AK176887.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-45-B01 Length = 1131 Score = 117 bits (59), Expect = 4e-23 Identities = 122/143 (85%) Strand = Plus / Minus Query: 353 ataaaagcaatctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccat 412 ||||||||||| |||||||| ||||||||||| || || | ||||||||||| |||||| Sbjct: 659 ataaaagcaatttcctcatcagtgagcttcctgaggaaccttgctgggtttcctccccat 600 Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||| |||| || || || || |||| |||||| || || ||||||||||||||| Sbjct: 599 acctctccagaaggaattctggtgttttgtcgtacaagtgcaccagcagcaaccatccca 540 Query: 473 tgcttttctacaacaacaccatc 495 |||||||| ||||| || ||||| Sbjct: 539 tgcttttcaacaacgaccccatc 517
>dbj|AK176844.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-40-H22 Length = 1293 Score = 117 bits (59), Expect = 4e-23 Identities = 122/143 (85%) Strand = Plus / Minus Query: 353 ataaaagcaatctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccat 412 ||||||||||| |||||||| ||||||||||| || || | ||||||||||| |||||| Sbjct: 717 ataaaagcaatttcctcatcagtgagcttcctgaggaaccttgctgggtttcctccccat 658 Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||| |||| || || || || |||| |||||| || || ||||||||||||||| Sbjct: 657 acctctccagaaggaattctggtgttttgtcgtacaagtgcaccagcagcaaccatccca 598 Query: 473 tgcttttctacaacaacaccatc 495 |||||||| ||||| || ||||| Sbjct: 597 tgcttttcaacaacgaccccatc 575
>dbj|AK175388.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-82-L07 Length = 1158 Score = 117 bits (59), Expect = 4e-23 Identities = 122/143 (85%) Strand = Plus / Minus Query: 353 ataaaagcaatctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccat 412 ||||||||||| |||||||| ||||||||||| || || | ||||||||||| |||||| Sbjct: 686 ataaaagcaatttcctcatcagtgagcttcctgaggaaccttgctgggtttcctccccat 627 Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||| |||| || || || || |||| |||||| || || ||||||||||||||| Sbjct: 626 acctctccagaaggaattctggtgttttgtcgtacaagtgcaccagcagcaaccatccca 567 Query: 473 tgcttttctacaacaacaccatc 495 |||||||| ||||| || ||||| Sbjct: 566 tgcttttcaacaacgaccccatc 544
>gb|BT014370.1| Lycopersicon esculentum clone 133658F, mRNA sequence Length = 1217 Score = 81.8 bits (41), Expect = 2e-12 Identities = 128/157 (81%) Strand = Plus / Minus Query: 362 atctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccatacctctcca 421 ||||| ||||| || |||||||||||||| || || || || || ||||||||||||| Sbjct: 748 atctcttcatcagttagcttcctcagaaacttagcgggattgcctgcccatacctctccg 689 Query: 422 caagggatccttgtattctgtcttacaagggctccggcagcaaccatcccatgcttttct 481 | || |||||||| |||||| | ||||||||||| ||||||||||| |||| || ||| Sbjct: 688 gagggaatccttgtgttctgtttcacaagggctcctgcagcaaccatggcatgtttctct 629 Query: 482 acaacaacaccatctaacagggttgctcccataccaa 518 ||| ||||||||| | ||| || || |||||||||| Sbjct: 628 acatgaacaccatcaagcagtgtggcccccataccaa 592
>gb|BT017479.1| Zea mays clone EL01N0408G09.c mRNA sequence Length = 1166 Score = 79.8 bits (40), Expect = 9e-12 Identities = 139/172 (80%) Strand = Plus / Minus Query: 359 gcaatctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccatacctct 418 ||||||||||| ||||| |||||||| || || || || || || || |||| |||||| Sbjct: 576 gcaatctcctcttctgtaagcttccttaggaacttggcaggattaccgacccagacctct 517 Query: 419 ccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatcccatgcttt 478 ||| |||| |||||||||||||| | ||||| | ||| ||| ||||||| | |||||| Sbjct: 516 ccagaaggaatccttgtattctgcttaacaagagatcctgcaccaaccatgctgtgcttt 457 Query: 479 tctacaacaacaccatctaacagggttgctcccataccaacaaaagcttcat 530 || || || || ||||| | ||| || || |||||||||||||||||||||| Sbjct: 456 tcaaccaccactccatcaagcagagtggcacccataccaacaaaagcttcat 405
>gb|AY107290.1| Zea mays PCO063868 mRNA sequence Length = 1381 Score = 79.8 bits (40), Expect = 9e-12 Identities = 139/172 (80%) Strand = Plus / Minus Query: 359 gcaatctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccatacctct 418 ||||||||||| ||||| |||||||| || || || || || || || |||| |||||| Sbjct: 764 gcaatctcctcttctgtaagcttccttaggaacttggcaggattaccgacccagacctct 705 Query: 419 ccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatcccatgcttt 478 ||| |||| |||||||||||||| | ||||| | ||| ||| ||||||| | |||||| Sbjct: 704 ccagaaggaatccttgtattctgcttaacaagagatcctgcaccaaccatgctgtgcttt 645 Query: 479 tctacaacaacaccatctaacagggttgctcccataccaacaaaagcttcat 530 || || || || ||||| | ||| || || |||||||||||||||||||||| Sbjct: 644 tcaactaccactccatcaagcagagtggcacccataccaacaaaagcttcat 593
>gb|AC137669.12| Medicago truncatula clone mth2-27m3, complete sequence Length = 120323 Score = 77.8 bits (39), Expect = 4e-11 Identities = 125/151 (82%), Gaps = 2/151 (1%) Strand = Plus / Plus Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||||| ||||| ||||||||||| || ||||| ||||||||||||||||| || Sbjct: 77080 acctctccacaggggattcttgtattctgcctgacaagagctccggcagcaaccatggca 77139 Query: 473 tgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagcttcattc 532 || || || ||| |||||||| | | |||||| ||||| |||| || || ||| || Sbjct: 77140 tgtttctcaacatgcacaccatcaagtaaggttgcacccatgccaatgaatgcctca-tc 77198 Query: 533 ctcaacagtggcatccttgtaatacagcact 563 ||||||||| |||||||||||| |||||||| Sbjct: 77199 ctcaacagt-gcatccttgtaacacagcact 77228
>gb|AF249876.1|AF249876 Arabidopsis thaliana transcription factor APFI mRNA, complete cds Length = 1216 Score = 77.8 bits (39), Expect = 4e-11 Identities = 121/147 (82%), Gaps = 1/147 (0%) Strand = Plus / Minus Query: 395 gctgggtttccaccccatacctctccacaagggatccttgtattctgtcttacaagggct 454 ||||| ||||| ||||| ||||||||| ||||||| | || |||||| | ||||| | Sbjct: 696 gctggatttcctccccacacctctccagaagggattcgcgtgttctgtttcacaagagaa 637 Query: 455 ccggcagcaaccatcccatgcttttctacaacaacaccatctaacagggttgctcccata 514 || ||||||||||| |||| || || || ||||||||||| | || |||||||||||| Sbjct: 636 ccagcagcaaccatggcatgtttctcaaccacaacaccatcaagtagtgttgctcccata 577 Query: 515 ccaacaaaagcttcattcctcaacagt 541 ||||||||||| ||| ||||||||||| Sbjct: 576 ccaacaaaagcatca-tcctcaacagt 551
>ref|NM_103620.2| Arabidopsis thaliana APFI AT1G47260 (APFI) mRNA, complete cds Length = 1750 Score = 71.9 bits (36), Expect = 2e-09 Identities = 145/180 (80%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 362 atctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccatacctctcca 421 ||||| |||||||| | ||| |||| || || ||||| ||||| ||||| ||||||||| Sbjct: 727 atctcttcatctgttaactttctcatgaactttgctggatttcctccccacacctctcca 668 Query: 422 caagggatccttgtattctgtcttacaagggctccggcagcaaccatcccatgcttttct 481 ||||||| | || |||||| | ||||| | || ||||||||||| |||| || || Sbjct: 667 gaagggattcgcgtgttctgtttcacaagagaaccagcagcaaccatggcatgtttctca 608 Query: 482 acaacaacaccatctaacagggttgctcccataccaacaaaagcttcattcctcaacagt 541 || || |||||||| | || ||||||||||||||||||||||| ||| ||||||||||| Sbjct: 607 accaccacaccatcaagtagtgttgctcccataccaacaaaagcatca-tcctcaacagt 549
>gb|AY113936.1| Arabidopsis thaliana unknown protein (At1g47260) mRNA, complete cds Length = 868 Score = 71.9 bits (36), Expect = 2e-09 Identities = 145/180 (80%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 362 atctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccatacctctcca 421 ||||| |||||||| | ||| |||| || || ||||| ||||| ||||| ||||||||| Sbjct: 590 atctcttcatctgttaactttctcatgaactttgctggatttcctccccacacctctcca 531 Query: 422 caagggatccttgtattctgtcttacaagggctccggcagcaaccatcccatgcttttct 481 ||||||| | || |||||| | ||||| | || ||||||||||| |||| || || Sbjct: 530 gaagggattcgcgtgttctgtttcacaagagaaccagcagcaaccatggcatgtttctca 471 Query: 482 acaacaacaccatctaacagggttgctcccataccaacaaaagcttcattcctcaacagt 541 || || |||||||| | || ||||||||||||||||||||||| ||| ||||||||||| Sbjct: 470 accaccacaccatcaagtagtgttgctcccataccaacaaaagcatca-tcctcaacagt 412
>gb|AY045979.1| Arabidopsis thaliana unknown protein (At1g47260) mRNA, complete cds Length = 1182 Score = 71.9 bits (36), Expect = 2e-09 Identities = 145/180 (80%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 362 atctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccatacctctcca 421 ||||| |||||||| | ||| |||| || || ||||| ||||| ||||| ||||||||| Sbjct: 696 atctcttcatctgttaactttctcatgaactttgctggatttcctccccacacctctcca 637 Query: 422 caagggatccttgtattctgtcttacaagggctccggcagcaaccatcccatgcttttct 481 ||||||| | || |||||| | ||||| | || ||||||||||| |||| || || Sbjct: 636 gaagggattcgcgtgttctgtttcacaagagaaccagcagcaaccatggcatgtttctca 577 Query: 482 acaacaacaccatctaacagggttgctcccataccaacaaaagcttcattcctcaacagt 541 || || |||||||| | || ||||||||||||||||||||||| ||| ||||||||||| Sbjct: 576 accaccacaccatcaagtagtgttgctcccataccaacaaaagcatca-tcctcaacagt 518
>gb|AC024609.2| Arabidopsis thaliana chromosome I BAC F14P1 genomic sequence, complete sequence Length = 90341 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 410 catacctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatc 469 |||||||||||| |||| || || || || |||| |||||| || || |||||||||||| Sbjct: 86051 catacctctccagaaggaattctggtgttttgtcgtacaagtgcaccagcagcaaccatc 86110 Query: 470 ccatgcttttctacaacaacaccatc 495 ||||||||||| ||||| || ||||| Sbjct: 86111 ccatgcttttcaacaacgaccccatc 86136 Score = 63.9 bits (32), Expect = 5e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 353 ataaaagcaatctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccat 412 ||||||||||| |||||||| ||||||||||| || || | ||||||||||| |||||| Sbjct: 85587 ataaaagcaatttcctcatcagtgagcttcctgaggaaccttgctgggtttcctccccat 85646 Query: 413 acct 416 |||| Sbjct: 85647 acct 85650
>gb|AC025808.8|AC025808 Genomic sequence for Arabidopsis thaliana BAC F18O14 from chromosome I, complete sequence Length = 120977 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 410 catacctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatc 469 |||||||||||| |||| || || || || |||| |||||| || || |||||||||||| Sbjct: 109595 catacctctccagaaggaattctggtgttttgtcgtacaagtgcaccagcagcaaccatc 109536 Query: 470 ccatgcttttctacaacaacaccatc 495 ||||||||||| ||||| || ||||| Sbjct: 109535 ccatgcttttcaacaacgaccccatc 109510 Score = 63.9 bits (32), Expect = 5e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 353 ataaaagcaatctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccat 412 ||||||||||| |||||||| ||||||||||| || || | ||||||||||| |||||| Sbjct: 110059 ataaaagcaatttcctcatcagtgagcttcctgaggaaccttgctgggtttcctccccat 110000 Query: 413 acct 416 |||| Sbjct: 109999 acct 109996
>ref|XM_479312.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1155 Score = 61.9 bits (31), Expect = 2e-06 Identities = 100/123 (81%) Strand = Plus / Minus Query: 408 cccatacctctccacaagggatccttgtattctgtcttacaagggctccggcagcaacca 467 |||| ||||||||| |||| ||||| || || || ||||||||| ||| ||| |||||| Sbjct: 626 cccagacctctccagaaggaatcctggtgttttgctttacaagggatcctgcaccaacca 567 Query: 468 tcccatgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagctt 527 | | |||||||| || || || ||||| | ||| || || ||||||||||||||||||| Sbjct: 566 tgctgtgcttttcaaccaccactccatcaagcagagtggcacccataccaacaaaagctt 507 Query: 528 cat 530 ||| Sbjct: 506 cat 504
>dbj|AK103904.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150M03, full insert sequence Length = 1238 Score = 61.9 bits (31), Expect = 2e-06 Identities = 100/123 (81%) Strand = Plus / Minus Query: 408 cccatacctctccacaagggatccttgtattctgtcttacaagggctccggcagcaacca 467 |||| ||||||||| |||| |||||||| ||||| | ||||| | ||| ||| |||||| Sbjct: 716 cccagacctctccagaaggaatccttgtgttctgcttaacaagcgatcctgcaccaacca 657 Query: 468 tcccatgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagctt 527 | | |||||||| || || || ||||| | ||| || || ||||||||||||||||||| Sbjct: 656 tgctgtgcttttcaacgaccactccatcaagcagagtggcacccataccaacaaaagctt 597 Query: 528 cat 530 ||| Sbjct: 596 cat 594
>dbj|AK060158.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-G03, full insert sequence Length = 1155 Score = 61.9 bits (31), Expect = 2e-06 Identities = 100/123 (81%) Strand = Plus / Minus Query: 408 cccatacctctccacaagggatccttgtattctgtcttacaagggctccggcagcaacca 467 |||| ||||||||| |||| ||||| || || || ||||||||| ||| ||| |||||| Sbjct: 626 cccagacctctccagaaggaatcctggtgttttgctttacaagggatcctgcaccaacca 567 Query: 468 tcccatgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagctt 527 | | |||||||| || || || ||||| | ||| || || ||||||||||||||||||| Sbjct: 566 tgctgtgcttttcaaccaccactccatcaagcagagtggcacccataccaacaaaagctt 507 Query: 528 cat 530 ||| Sbjct: 506 cat 504
>dbj|AK058974.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D04, full insert sequence Length = 1195 Score = 61.9 bits (31), Expect = 2e-06 Identities = 100/123 (81%) Strand = Plus / Minus Query: 408 cccatacctctccacaagggatccttgtattctgtcttacaagggctccggcagcaacca 467 |||| ||||||||| |||| |||||||| ||||| | ||||| | ||| ||| |||||| Sbjct: 718 cccagacctctccagaaggaatccttgtgttctgcttaacaagcgatcctgcaccaacca 659 Query: 468 tcccatgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagctt 527 | | |||||||| || || || ||||| | ||| || || ||||||||||||||||||| Sbjct: 658 tgctgtgcttttcaacgaccactccatcaagcagagtggcacccataccaacaaaagctt 599 Query: 528 cat 530 ||| Sbjct: 598 cat 596
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 60.0 bits (30), Expect = 8e-06 Identities = 96/118 (81%) Strand = Plus / Minus Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||| |||| |||||||| ||||| | ||||| | ||| ||| ||||||| | Sbjct: 3550621 acctctccagaaggaatccttgtgttctgcttaacaagcgatcctgcaccaaccatgctg 3550562 Query: 473 tgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagcttcat 530 |||||||| || || || ||||| | ||| || || |||||||||||||||||||||| Sbjct: 3550561 tgcttttcaacgaccactccatcaagcagagtggcacccataccaacaaaagcttcat 3550504
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 8e-06 Identities = 96/118 (81%) Strand = Plus / Plus Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||| |||| ||||| || || || ||||||||| ||| ||| ||||||| | Sbjct: 26722829 acctctccagaaggaatcctggtgttttgctttacaagggatcctgcaccaaccatgctg 26722888 Query: 473 tgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagcttcat 530 |||||||| || || || ||||| | ||| || || |||||||||||||||||||||| Sbjct: 26722889 tgcttttcaaccaccactccatcaagcagagtggcacccataccaacaaaagcttcat 26722946 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 531 tcctcaacagtggcatccttgtaat 555 ||||||||||| ||||||||||||| Sbjct: 27503525 tcctcaacagttgcatccttgtaat 27503549
>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1003_C06 Length = 143168 Score = 60.0 bits (30), Expect = 8e-06 Identities = 96/118 (81%) Strand = Plus / Plus Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||| |||| ||||| || || || ||||||||| ||| ||| ||||||| | Sbjct: 69686 acctctccagaaggaatcctggtgttttgctttacaagggatcctgcaccaaccatgctg 69745 Query: 473 tgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagcttcat 530 |||||||| || || || ||||| | ||| || || |||||||||||||||||||||| Sbjct: 69746 tgcttttcaaccaccactccatcaagcagagtggcacccataccaacaaaagcttcat 69803
>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524G08 Length = 146690 Score = 60.0 bits (30), Expect = 8e-06 Identities = 96/118 (81%) Strand = Plus / Plus Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||| |||| ||||| || || || ||||||||| ||| ||| ||||||| | Sbjct: 140433 acctctccagaaggaatcctggtgttttgctttacaagggatcctgcaccaaccatgctg 140492 Query: 473 tgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagcttcat 530 |||||||| || || || ||||| | ||| || || |||||||||||||||||||||| Sbjct: 140493 tgcttttcaaccaccactccatcaagcagagtggcacccataccaacaaaagcttcat 140550
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 60.0 bits (30), Expect = 8e-06 Identities = 96/118 (81%) Strand = Plus / Minus Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||| |||| |||||||| ||||| | ||||| | ||| ||| ||||||| | Sbjct: 3550566 acctctccagaaggaatccttgtgttctgcttaacaagcgatcctgcaccaaccatgctg 3550507 Query: 473 tgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagcttcat 530 |||||||| || || || ||||| | ||| || || |||||||||||||||||||||| Sbjct: 3550506 tgcttttcaacgaccactccatcaagcagagtggcacccataccaacaaaagcttcat 3550449
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 60.0 bits (30), Expect = 8e-06 Identities = 96/118 (81%) Strand = Plus / Minus Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||| |||| |||||||| ||||| | ||||| | ||| ||| ||||||| | Sbjct: 65549 acctctccagaaggaatccttgtgttctgcttaacaagcgatcctgcaccaaccatgctg 65490 Query: 473 tgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagcttcat 530 |||||||| || || || ||||| | ||| || || |||||||||||||||||||||| Sbjct: 65489 tgcttttcaacgaccactccatcaagcagagtggcacccataccaacaaaagcttcat 65432
>emb|BX816589.1|CNS0ADBJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH57ZD01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1092 Score = 58.0 bits (29), Expect = 3e-05 Identities = 134/169 (79%) Strand = Plus / Minus Query: 362 atctcctcatctgtgagcttcctcagaaatttcgctgggtttccaccccatacctctcca 421 ||||| |||||||| | ||| |||| || || ||||| ||||| ||||| ||||||||| Sbjct: 677 atctcttcatctgttaactttctcatgaactttgctggatttcctccccacacctctcca 618 Query: 422 caagggatccttgtattctgtcttacaagggctccggcagcaaccatcccatgcttttct 481 ||||||| | || |||||| | ||||| | || ||||||||||| |||| || || Sbjct: 617 gaagggattcgcgtgttctgtttcacaagagaaccagcagcaaccatggcatgtttctca 558 Query: 482 acaacaacaccatctaacagggttgctcccataccaacaaaagcttcat 530 || || |||||||| | || |||||||||||||||||||||| |||| Sbjct: 557 accaccacaccatcaagtagttttgctcccataccaacaaaagcatcat 509
>gb|AC079677.4|AC079677 Arabidopsis thaliana chromosome 1 BAC F8G22 genomic sequence, complete sequence Length = 42801 Score = 58.0 bits (29), Expect = 3e-05 Identities = 105/129 (81%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 413 acctctccacaagggatccttgtattctgtcttacaagggctccggcagcaaccatccca 472 ||||||||| ||||||| | || |||||| | ||||| | || ||||||||||| || Sbjct: 8024 acctctccagaagggattcgcgtgttctgtttcacaagagaaccagcagcaaccatggca 7965 Query: 473 tgcttttctacaacaacaccatctaacagggttgctcccataccaacaaaagcttcattc 532 || || || || || |||||||| | || ||||||||||||||||||||||| ||| || Sbjct: 7964 tgtttctcaaccaccacaccatcaagtagtgttgctcccataccaacaaaagcatca-tc 7906 Query: 533 ctcaacagt 541 ||||||||| Sbjct: 7905 ctcaacagt 7897
>ref|NM_126049.3| Arabidopsis thaliana unknown protein AT5G66510 mRNA, complete cds Length = 1223 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 379 cttcctcagaaatttcgctgggtttccaccccatacctctccacaagggatccttgtatt 438 ||||||||||||||| |||||||| || ||||| ||||| ||| | || || || || || Sbjct: 707 cttcctcagaaatttagctgggttgcctccccaaacctcgccagagggaattctagtgtt 648 Query: 439 ctgtcttacaagggctccggcagcaaccat 468 ||| || ||||| ||||| | ||||||||| Sbjct: 647 ctgcctaacaagagctcctgaagcaaccat 618
>gb|AY079385.1| Arabidopsis thaliana putative ferripyochelin-binding protein (At5g66510) mRNA, complete cds Length = 808 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 379 cttcctcagaaatttcgctgggtttccaccccatacctctccacaagggatccttgtatt 438 ||||||||||||||| |||||||| || ||||| ||||| ||| | || || || || || Sbjct: 573 cttcctcagaaatttagctgggttgcctccccaaacctcgccagagggaattctagtgtt 514 Query: 439 ctgtcttacaagggctccggcagcaaccat 468 ||| || ||||| ||||| | ||||||||| Sbjct: 513 ctgcctaacaagagctcctgaagcaaccat 484
>gb|AY045784.1| Arabidopsis thaliana putative ferripyochelin-binding protein (At5g66510) mRNA, complete cds Length = 1163 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 379 cttcctcagaaatttcgctgggtttccaccccatacctctccacaagggatccttgtatt 438 ||||||||||||||| |||||||| || ||||| ||||| ||| | || || || || || Sbjct: 681 cttcctcagaaatttagctgggttgcctccccaaacctcgccagagggaattctagtgtt 622 Query: 439 ctgtcttacaagggctccggcagcaaccat 468 ||| || ||||| ||||| | ||||||||| Sbjct: 621 ctgcctaacaagagctcctgaagcaaccat 592
>emb|BX829487.1|CNS0A1JN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB16ZG12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 874 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 379 cttcctcagaaatttcgctgggtttccaccccatacctctccacaagggatccttgtatt 438 ||||||||||||||| |||||||| || ||||| ||||| ||| | || || || || || Sbjct: 403 cttcctcagaaatttagctgggttgcctccccaaacctcgccagagggaattctagtgtt 344 Query: 439 ctgtcttacaagggctccggcagcaaccat 468 ||| || ||||| ||||| | ||||||||| Sbjct: 343 ctgcctaacaagagctcctgaagcaaccat 314
>gb|AY087379.1| Arabidopsis thaliana clone 34700 mRNA, complete sequence Length = 1198 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 379 cttcctcagaaatttcgctgggtttccaccccatacctctccacaagggatccttgtatt 438 ||||||||||||||| |||||||| || ||||| ||||| ||| | || || || || || Sbjct: 708 cttcctcagaaatttagctgggttgcctccccaaacctcgccagagggaattctagtgtt 649 Query: 439 ctgtcttacaagggctccggcagcaaccat 468 ||| || ||||| ||||| | ||||||||| Sbjct: 648 ctgcctaacaagagctcctgaagcaaccat 619
>dbj|AB013389.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K1F13 Length = 83511 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Plus Query: 379 cttcctcagaaatttcgctgggtttccaccccatacct 416 ||||||||||||||| |||||||| || ||||| |||| Sbjct: 39136 cttcctcagaaatttagctgggttgcctccccaaacct 39173
>ref|XM_797853.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510153.10) partial mRNA Length = 1638 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 tcctggtgagcaactttcttc 256 ||||||||||||||||||||| Sbjct: 833 tcctggtgagcaactttcttc 813
>gb|AC087633.5| Homo sapiens chromosome 15, clone RP11-255M2, complete sequence Length = 179163 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 369 catctgtgagcttcctcagaa 389 ||||||||||||||||||||| Sbjct: 45502 catctgtgagcttcctcagaa 45482
>emb|BX816366.1|CNS0ADBR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH44ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1058 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 506 gctcccataccaacaaaagcttcat 530 |||||||||||||||||||| |||| Sbjct: 499 gctcccataccaacaaaagcatcat 475
>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0018C07 Length = 141707 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 531 tcctcaacagtggcatccttgtaat 555 ||||||||||| ||||||||||||| Sbjct: 67496 tcctcaacagttgcatccttgtaat 67520
>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006B22, complete sequence Length = 166052 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 ctttctcaaaatcaatcttt 283 |||||||||||||||||||| Sbjct: 65184 ctttctcaaaatcaatcttt 65165
>gb|AC135242.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0070D14, complete sequence Length = 174780 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 ctttctcaaaatcaatcttt 283 |||||||||||||||||||| Sbjct: 75891 ctttctcaaaatcaatcttt 75910
>emb|AL032621.1|CEY45F3A Caenorhabditis elegans YAC Y45F3A, complete sequence Length = 36654 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 tttcgctgggtttccacccc 410 |||||||||||||||||||| Sbjct: 24346 tttcgctgggtttccacccc 24327
>ref|XM_760984.1| Theileria parva strain Muguga chromosome 1 hypothetical protein (TP01_0558) partial mRNA Length = 1419 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tctcaaaatcaatcttttcc 286 |||||||||||||||||||| Sbjct: 817 tctcaaaatcaatcttttcc 836
>gb|AE017245.1| Mycoplasma synoviae 53, complete genome Length = 799476 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 ttgctcccataccaacaaaa 523 |||||||||||||||||||| Sbjct: 728996 ttgctcccataccaacaaaa 729015
>emb|X78201.1|SS17BED S.scrofa 17beta-estradiol dehydrogenase mRNA Length = 2886 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 ttctgtcttacaagggctcc 456 |||||||||||||||||||| Sbjct: 848 ttctgtcttacaagggctcc 829
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 ctttctcaaaatcaatcttt 283 |||||||||||||||||||| Sbjct: 15082927 ctttctcaaaatcaatcttt 15082946
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 ctttctcaaaatcaatcttt 283 |||||||||||||||||||| Sbjct: 14729770 ctttctcaaaatcaatcttt 14729751
>ref|NM_214306.1| Sus scrofa 17beta-estradiol dehydrogenase (HSD17B4), mRNA Length = 2886 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 ttctgtcttacaagggctcc 456 |||||||||||||||||||| Sbjct: 848 ttctgtcttacaagggctcc 829
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0424A08 Length = 151294 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 ctttctcaaaatcaatcttt 283 |||||||||||||||||||| Sbjct: 15428 ctttctcaaaatcaatcttt 15447
>emb|AL844511.14| Mouse DNA sequence from clone RP23-244B6 on chromosome 2, complete sequence Length = 144077 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 ccatctaacagggttgctcc 510 |||||||||||||||||||| Sbjct: 33156 ccatctaacagggttgctcc 33137
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 ctttctcaaaatcaatcttt 283 |||||||||||||||||||| Sbjct: 15164625 ctttctcaaaatcaatcttt 15164644 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,796,226 Number of Sequences: 3902068 Number of extensions: 3796226 Number of successful extensions: 66260 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65998 Number of HSP's gapped (non-prelim): 245 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)