ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16g20 |
|---|---|
| Clone Library Name | barley_pub |
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 35.0 bits (79), Expect = 0.15 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%) Frame = +1 Query: 322 PHHHRVQQHETSQQLLRSKNSQINLHPVRPHEPQH----CLSHHCKQRTNSHESHP 477 PH+H H Q L S N P P+ P H L HH K + + HP Sbjct: 203 PHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHP 258
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 33.9 bits (76), Expect = 0.34 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 4/56 (7%) Frame = +1 Query: 322 PHHHRVQQHETSQQLLRSKNSQINLHPVRPHEPQH----CLSHHCKQRTNSHESHP 477 PH+H H Q L S N P P P H L HH K + + HP Sbjct: 203 PHYHHEHHHNHRHQHLGSSELSENQQPGAPDAPTHPAPPGLHHHHKHKGQHRQGHP 258
>E75BC_DROME (P17671) Ecdysone-induced protein 75B isoforms C/D (E75-A)| Length = 1199 Score = 32.3 bits (72), Expect = 0.98 Identities = 19/63 (30%), Positives = 27/63 (42%) Frame = +1 Query: 322 PHHHRVQQHETSQQLLRSKNSQINLHPVRPHEPQHCLSHHCKQRTNSHESHPSCVLRPPY 501 PHHH Q+H+ QQ + H ++ H H + H Q+ N H S V+ Sbjct: 155 PHHHPQQEHQPQQQQQQ--------HHLQHHPHPHVMYPHGYQQANLHHSGGIAVVPADS 206 Query: 502 RRQ 510 R Q Sbjct: 207 RPQ 209
>SIF1_DROME (P91621) Protein still life, isoform SIF type 1| Length = 2072 Score = 31.6 bits (70), Expect = 1.7 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 15/101 (14%) Frame = +1 Query: 310 SSLCPHHHRVQQHETSQQLLRSKNSQINLHP-VRPHEP------QHCLSHHCKQ------ 450 SS PH + QQ + QQL++ ++ + HP P EP Q L HH Sbjct: 1920 SSPEPHQQQQQQQQQQQQLMQQGHAHAHPHPHPHPREPPPPPIRQPHLHHHSSDIERIDP 1979 Query: 451 --RTNSHESHPSCVLRPPYRRQLIPIKLDVRRVSGAIIGST 567 ++ E +RP P L + S +GST Sbjct: 1980 GTKSEGEEDSQQGTIRPKATLGRTPNHLTLSTTSTLSVGST 2020
>OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-blind) (L(1)omb)| (Protein bifid) Length = 972 Score = 31.6 bits (70), Expect = 1.7 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%) Frame = +1 Query: 325 HHHRVQQHETSQQLLRSKNSQINLHPVR--PHEPQHCLSHH 441 HHH Q H QQ Q + P + PH H SHH Sbjct: 923 HHHHTQAHHQQQQHQSHHQQQHHQQPAQPHPHHQTHLHSHH 963
>SIF2_DROME (P91620) Protein still life, isoforms C/SIF type 2| Length = 2061 Score = 31.6 bits (70), Expect = 1.7 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 15/101 (14%) Frame = +1 Query: 310 SSLCPHHHRVQQHETSQQLLRSKNSQINLHP-VRPHEP------QHCLSHHCKQ------ 450 SS PH + QQ + QQL++ ++ + HP P EP Q L HH Sbjct: 1909 SSPEPHQQQQQQQQQQQQLMQQGHAHAHPHPHPHPREPPPPPIRQPHLHHHSSDIERIDP 1968 Query: 451 --RTNSHESHPSCVLRPPYRRQLIPIKLDVRRVSGAIIGST 567 ++ E +RP P L + S +GST Sbjct: 1969 GTKSEGEEDSQQGTIRPKATLGRTPNHLTLSTTSTLSVGST 2009
>LORI_HUMAN (P23490) Loricrin| Length = 316 Score = 31.6 bits (70), Expect = 1.7 Identities = 19/58 (32%), Positives = 22/58 (37%) Frame = -2 Query: 496 GAEGRS*DGSRGCLFAAYSGGTGSAEVHEGAQGED*SESFCFEEAAGWSRVAVRGGGG 323 G G S G G GG+G + + G G S CF G S GGGG Sbjct: 63 GCGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGG 120
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 31.2 bits (69), Expect = 2.2 Identities = 15/50 (30%), Positives = 19/50 (38%) Frame = +1 Query: 325 HHHRVQQHETSQQLLRSKNSQINLHPVRPHEPQHCLSHHCKQRTNSHESH 474 HHH + HE + + HP HEP H HH + H H Sbjct: 63 HHHPEEHHEPHHE------EHHHHHPEEHHEPHHEEHHHHHPHPHHHHHH 106
>E74EB_DROME (P11536) Ecdysone-induced protein 74EF isoform B (ETS-related| protein E74B) Length = 883 Score = 31.2 bits (69), Expect = 2.2 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%) Frame = +1 Query: 325 HHHRVQQHETSQQLLRSKNSQINLHPVRPHEPQHCL----SHHCKQRTNSHESHPSCVLR 492 +H QQ + QQ +S+ Q H H+ Q L SH +Q+ + HP L Sbjct: 609 YHSLHQQQQQQQQSQQSQQQQQLAHQQLSHQQQQALHQQLSHQQQQQQQQQQQHPHSQLN 668 Query: 493 PPY 501 P+ Sbjct: 669 GPH 671
>E74EA_DROME (P20105) Ecdysone-induced protein 74EF isoform A (ETS-related| protein E74A) Length = 829 Score = 31.2 bits (69), Expect = 2.2 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%) Frame = +1 Query: 325 HHHRVQQHETSQQLLRSKNSQINLHPVRPHEPQHCL----SHHCKQRTNSHESHPSCVLR 492 +H QQ + QQ +S+ Q H H+ Q L SH +Q+ + HP L Sbjct: 555 YHSLHQQQQQQQQSQQSQQQQQLAHQQLSHQQQQALHQQLSHQQQQQQQQQQQHPHSQLN 614 Query: 493 PPY 501 P+ Sbjct: 615 GPH 617
>ATG9_YARLI (Q6C2F5) Autophagy-related protein 9| Length = 788 Score = 31.2 bits (69), Expect = 2.2 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = -3 Query: 531 IKFDRNELTTIGGPKDAARMALVAVCSLLTVVGQAVLRFMRAHRV 397 ++ D NEL TI P+ A RMA ++ + T VG + + + H + Sbjct: 263 LEIDENELQTISWPQVAKRMATLSEANAATQVGNSTKQRIEPHDI 307
>UL76_HCMVA (P16725) Protein UL76| Length = 325 Score = 30.8 bits (68), Expect = 2.9 Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 1/95 (1%) Frame = -2 Query: 493 AEGRS*DGSRGCLFAAYSGGTGSAEVH-EGAQGED*SESFCFEEAAGWSRVAVRGGGGDK 317 A GR D +R L + G G+ V GAQG S S + G R VRGGG + Sbjct: 228 AGGRGGDNARRGLARGRAHGPGAQTVSASGAQG---SGSQGADLLRGSRRARVRGGGAVE 284 Query: 316 ESFLLSFTCVASSTDTAANASVIFTEALKVGR*WC 212 + VA+ T +S F + GR +C Sbjct: 285 PAVRARRRTVAADAATTTVSSAFFVPRDRRGRSFC 319
>HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-) (Protein| pam/highwire/rpm-1) Length = 5233 Score = 30.0 bits (66), Expect = 4.9 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Frame = +1 Query: 322 PHHHRVQQHETSQQLLRSKNSQINLHPVRPHEPQHCLSHHCKQRTNSHESHPSCVLRP-P 498 P HH QQH QQ+ N Q+ H P + Q + + + + S + P Sbjct: 3910 PPHHPQQQHHQQQQM----NLQLQQHQAPPVDGQPKVVYRRRNNSTSEGDGSLLICYPSE 3965 Query: 499 YRRQLIPIKL 528 + R+L+P KL Sbjct: 3966 HLRRLVPQKL 3975
>ZEN_DROSU (Q24648) Protein zerknuellt| Length = 373 Score = 30.0 bits (66), Expect = 4.9 Identities = 20/67 (29%), Positives = 29/67 (43%) Frame = +1 Query: 325 HHHRVQQHETSQQLLRSKNSQINLHPVRPHEPQHCLSHHCKQRTNSHESHPSCVLRPPYR 504 HHH TS Q ++ P P QH HH +Q+ +S E+ PS +P Sbjct: 28 HHHSANLQPTSLQ--NYTQHSVSSIPEHPSLQQHHHQHHQQQQLSSDENLPS---QPSQD 82 Query: 505 RQLIPIK 525 Q + +K Sbjct: 83 MQRVKLK 89
>GBF_DICDI (P36417) G-box-binding factor (GBF)| Length = 708 Score = 29.6 bits (65), Expect = 6.4 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +1 Query: 325 HHHRVQQHETSQQLLRSKNSQ-INLHPVRPHEPQHCLSHHCKQRTNSHESH 474 HH ++QQ + QQ+ + Q + H + + QH HH +Q+ + H Sbjct: 168 HHQQMQQQQHHQQMQHHQLQQHQHQHQQQQQQQQHQQQHHQQQQQQQQQHH 218
>FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor FKH-4)| Length = 428 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/36 (36%), Positives = 15/36 (41%) Frame = +1 Query: 391 NLHPVRPHEPQHCLSHHCKQRTNSHESHPSCVLRPP 498 +LHP PH H HH + H HP PP Sbjct: 135 HLHPHHPHHAHHHHHHHHHAAHHHHHHHPPQPPPPP 170
>VID21_CANAL (Q5A119) Chromatin modification-related protein VID21| Length = 686 Score = 29.3 bits (64), Expect = 8.3 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +1 Query: 307 KSSLCPHHHRVQQHETSQQLLRSKNSQINLHPVRPHEPQH 426 K +L PHHH + T Q L S L P +P P++ Sbjct: 310 KIALKPHHHHHRHQTTHQGLFGSTRKYNTLKPPKPPTPKN 349 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,103,605 Number of Sequences: 219361 Number of extensions: 1431851 Number of successful extensions: 4155 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3985 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4130 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
