ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16g02 |
|---|---|
| Clone Library Name | barley_pub |
>SSRB_CANFA (P23438) Translocon-associated protein beta subunit precursor| (TRAP-beta) (Signal sequence receptor beta subunit) (SSR-beta) (Glycoprotein 25H) (gp25H) Length = 183 Score = 58.9 bits (141), Expect = 1e-08 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 5/112 (4%) Frame = -2 Query: 586 LAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKTLERLEPGATASHAFVLESKT 407 L + ++YN GS+ A DV ++DDS+P E F +VSG ++ +R+ P + SH VL Sbjct: 40 LTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLK 99 Query: 406 QGRFQASPAVIKYRVATKAALQEAYSTPIPALDILAERPPVKKF-----EWA 266 G F + A + Y + +++ ILA+R ++F +WA Sbjct: 100 AGYFNFTSATVTYLAQEDGPVVIGFTSAPGQGGILAQREFDRRFSPHFLDWA 151
>SSRB_BOVIN (Q5E9E4) Translocon-associated protein beta subunit precursor| (TRAP-beta) (Signal sequence receptor beta subunit) (SSR-beta) Length = 183 Score = 58.9 bits (141), Expect = 1e-08 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 5/112 (4%) Frame = -2 Query: 586 LAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKTLERLEPGATASHAFVLESKT 407 L + ++YN GS+ A DV ++DDS+P E F +VSG ++ +R+ P + SH VL Sbjct: 40 LTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLK 99 Query: 406 QGRFQASPAVIKYRVATKAALQEAYSTPIPALDILAERPPVKKF-----EWA 266 G F + A + Y + +++ ILA+R ++F +WA Sbjct: 100 AGYFNFTSATVTYLAQEDGPVVIGFTSAPGQGGILAQREFDRRFSPHFLDWA 151
>SSRB_MOUSE (Q9CPW5) Translocon-associated protein beta subunit precursor| (TRAP-beta) (Signal sequence receptor beta subunit) (SSR-beta) Length = 183 Score = 57.8 bits (138), Expect = 3e-08 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 6/113 (5%) Frame = -2 Query: 586 LAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKTLERLEPGATASHAFVLESKT 407 L + ++YN GS+ A DV ++DDS+P E F +VSG ++ +R+ P + SH VL Sbjct: 40 LTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLK 99 Query: 406 QGRFQASPAVIKYRVATKAALQEAYSTPIPAL-DILAERPPVKKF-----EWA 266 G F + A I Y +A + ST P ILA+R ++F +WA Sbjct: 100 AGYFNFTSATITY-LAQEDGPVVIGSTSAPGQGGILAQREFDRRFSPHFLDWA 151
>SSRB_HUMAN (P43308) Translocon-associated protein beta subunit precursor| (TRAP-beta) (Signal sequence receptor beta subunit) (SSR-beta) Length = 183 Score = 57.8 bits (138), Expect = 3e-08 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 6/113 (5%) Frame = -2 Query: 586 LAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKTLERLEPGATASHAFVLESKT 407 L + ++YN GS+ A DV ++DDS+P E F +VSG ++ +R+ P + SH VL Sbjct: 40 LTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLK 99 Query: 406 QGRFQASPAVIKYRVATKAALQEAYSTPIPAL-DILAERPPVKKF-----EWA 266 G F + A I Y +A + ST P ILA+R ++F +WA Sbjct: 100 AGYFNFTSATITY-LAQEDGPVVIGSTSAPGQGGILAQREFDRRFSPHFLDWA 151
>SATB2_MOUSE (Q8VI24) DNA-binding protein SATB2 (Special AT-rich| sequence-binding protein 2) Length = 733 Score = 32.7 bits (73), Expect = 0.93 Identities = 20/83 (24%), Positives = 38/83 (45%) Frame = -2 Query: 610 RPKPGVERLAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKTLERLEPGATASH 431 +P+P + VS D+Y Q +++ + + AF G +S+ L + E TAS Sbjct: 350 KPEPTNSSVEVSPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEEDPRTASQ 409 Query: 430 AFVLESKTQGRFQASPAVIKYRV 362 + ++ + F P V + R+ Sbjct: 410 SLLVNLRAMQNFLNLPEVERDRI 432
>SATB2_HUMAN (Q9UPW6) DNA-binding protein SATB2 (Special AT-rich| sequence-binding protein 2) Length = 733 Score = 32.7 bits (73), Expect = 0.93 Identities = 20/83 (24%), Positives = 38/83 (45%) Frame = -2 Query: 610 RPKPGVERLAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKTLERLEPGATASH 431 +P+P + VS D+Y Q +++ + + AF G +S+ L + E TAS Sbjct: 350 KPEPTNSSVEVSPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEEDPRTASQ 409 Query: 430 AFVLESKTQGRFQASPAVIKYRV 362 + ++ + F P V + R+ Sbjct: 410 SLLVNLRAMQNFLNLPEVERDRI 432
>DAN1_YEAST (P47178) Cell wall protein DAN1 precursor (Covalently-linked cell| wall protein 13) Length = 298 Score = 31.2 bits (69), Expect = 2.7 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 10/116 (8%) Frame = +3 Query: 228 TDTSAPYFATSFLAHSNF---FTGGLSARMSRAGMGVEXXXXXXXFVATRYLMTAGEAWN 398 T+T P A + A +F TG ++R GV + L G A Sbjct: 61 TETYPPEIAKAVFAGGDFTTMLTGISGDEVTRMITGVPWYSTRLMGAISEALANGGIATA 120 Query: 399 LPCVLL--SNTNACEAVAPGSSLSKVFETSPETSSN-----ASLGQESSLMATSYA 545 +P S+T+ EA + + S E+S ETSSN A++ ESS A++ A Sbjct: 121 VPASTTEASSTSTSEASSAATESSSSSESSAETSSNAASTQATVSSESSSAASTIA 176
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = +3 Query: 402 PCVLLSNTNACEAVAPGSSLSKVFETSPETSSNAS 506 PCV S+T A A + SSLS +S TSS+ S Sbjct: 132 PCVSTSSTTAAAATSSTSSLSSSSSSSSSTSSSTS 166
>ABIL4_ORYSA (Q6I588) Probable protein ABIL4 (Abl interactor-like protein 4)| Length = 302 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = -3 Query: 534 WPLMTTLGPRKHLNLSLERSQRLWKGLNLVPLLRTRLYWRAKHREGSKLHLLSSSTVL 361 W + +GP S+ERS+ K L + LR +LY +++ E S LH VL Sbjct: 13 WAGVAGVGPTTVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVL 70 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,936,165 Number of Sequences: 219361 Number of extensions: 1708856 Number of successful extensions: 5885 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 5634 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5880 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
