ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16f24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1DNM3B_MOUSE (O88509) DNA (cytosine-5)-methyltransferase 3B (EC 2... 39 0.011
2DNM3B_HUMAN (Q9UBC3) DNA (cytosine-5)-methyltransferase 3B (EC 2... 37 0.056
3MTF1_FUSNU (P34906) Modification methylase FnuDI (EC 2.1.1.37) (... 36 0.074
4DNM3A_HUMAN (Q9Y6K1) DNA (cytosine-5)-methyltransferase 3A (EC 2... 36 0.074
5DNMT2_HUMAN (O14717) DNA (cytosine-5)-methyltransferase-like pro... 36 0.074
6DNM3A_MOUSE (O88508) DNA (cytosine-5)-methyltransferase 3A (EC 2... 36 0.074
7MTBR_BPRH1 (P09915) Modification methylase Rho11sI (EC 2.1.1.37)... 36 0.096
8MTH3_HAEAE (P20589) Modification methylase HaeIII (EC 2.1.1.37) ... 35 0.16
9DNMT2_MOUSE (O55055) DNA (cytosine-5)-methyltransferase-like pro... 35 0.21
10RPOC1_LACSA (Q56P12) DNA-directed RNA polymerase beta' chain (EC... 35 0.21
11MTBS_BPSPR (P00476) Modification methylase SPRI (EC 2.1.1.37) (C... 34 0.28
12PMT1_SCHPO (P40999) DNA methyltransferase homolog pmt1 (SpIM.Spo... 34 0.37
13RPOC1_PSINU (Q8WI25) DNA-directed RNA polymerase beta' chain (EC... 33 0.62
14RPOC_BACFR (Q64NJ8) DNA-directed RNA polymerase beta' chain (EC ... 33 0.81
15RPOC_BACFN (Q5L898) DNA-directed RNA polymerase beta' chain (EC ... 33 0.81
16RPOC_PELCD (Q3A6Q3) DNA-directed RNA polymerase beta' chain (EC ... 32 1.1
17RPOC_PSEHT (Q3ILP8) DNA-directed RNA polymerase beta' chain (EC ... 32 1.8
18EZRA_LACLA (Q9CDR6) Septation ring formation regulator ezrA 32 1.8
19RPOC1_SILLA (Q589B9) DNA-directed RNA polymerase beta' chain (EC... 32 1.8
20RPOC_GLUOX (Q5FTX8) DNA-directed RNA polymerase beta' chain (EC ... 32 1.8
21RPOC_PORGI (Q7MX26) DNA-directed RNA polymerase beta' chain (EC ... 32 1.8
22RPOC_CARHZ (Q3A9Q8) DNA-directed RNA polymerase beta' chain (EC ... 31 2.4
23ZN614_HUMAN (Q8N883) Zinc finger protein 614 31 2.4
24RPOC_CORJK (Q4JT33) DNA-directed RNA polymerase beta' chain (EC ... 31 2.4
25RPOC1_ANTFO (Q85CL6) DNA-directed RNA polymerase beta' chain (EC... 31 2.4
26RPOC_PORCN (O33431) DNA-directed RNA polymerase beta' chain (EC ... 31 2.4
27RPOC_CHLTE (Q8KG14) DNA-directed RNA polymerase beta' chain (EC ... 31 3.1
28MTBP_BPPHT (P68586) Modification methylase Phi3TI (EC 2.1.1.37) ... 31 3.1
29MTBP_BACSU (P68585) Phi-3T prophage-derived modification methyla... 31 3.1
30RPOC_CHLCH (Q3ATP4) DNA-directed RNA polymerase beta' chain (EC ... 31 3.1
31RPOC_SHEVI (Q9KW13) DNA-directed RNA polymerase beta' chain (EC ... 31 3.1
32MTBB_BPSPB (P09389) Modification methylase SPBetaI (EC 2.1.1.37)... 31 3.1
33MTAA_SYNP2 (P34882) Modification methylase AquI alpha subunit (E... 31 3.1
34RPOC1_SINAL (P46819) DNA-directed RNA polymerase beta' chain (EC... 30 4.0
35RPOC1_ARATH (P56763) DNA-directed RNA polymerase beta' chain (EC... 30 4.0
36MTC1_HERAU (P25263) Modification methylase HgiCI (EC 2.1.1.37) (... 30 4.0
37RPOC_NEIMB (Q9K1J1) DNA-directed RNA polymerase beta' chain (EC ... 30 4.0
38RPOC_NEIMA (Q9JX03) DNA-directed RNA polymerase beta' chain (EC ... 30 4.0
39RPOC_NEIG1 (Q5F5R6) DNA-directed RNA polymerase beta' chain (EC ... 30 4.0
40RPOC1_SOYBN (Q8HVY4) DNA-directed RNA polymerase beta' chain (EC... 30 4.0
41RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC ... 30 4.0
42RPOC_COREF (Q8FS96) DNA-directed RNA polymerase beta' chain (EC ... 30 4.0
43RPOC1_LOTJA (Q9BBS8) DNA-directed RNA polymerase beta' chain (EC... 30 4.0
44RPOC1_TOBAC (P12116) DNA-directed RNA polymerase beta' chain (EC... 30 5.3
45RPOC1_CUCSA (Q4VZP2) DNA-directed RNA polymerase beta' chain (EC... 30 5.3
46RPOC_DESDG (Q30X04) DNA-directed RNA polymerase beta' chain (EC ... 30 5.3
47RPOC_DESVH (Q727C6) DNA-directed RNA polymerase beta' chain (EC ... 30 5.3
48RPOC1_NICTO (Q33C47) DNA-directed RNA polymerase beta' chain (EC... 30 5.3
49RPOC1_NICSY (Q3C1G8) DNA-directed RNA polymerase beta' chain (EC... 30 5.3
50RPOC1_ATRBE (Q8S8Y0) DNA-directed RNA polymerase beta' chain (EC... 30 5.3
51RPOC1_SOLTU (Q2VEI5) DNA-directed RNA polymerase beta' chain (EC... 30 5.3
52CAN1_RABIT (P06815) Calpain-1 catalytic subunit (EC 3.4.22.52) (... 30 5.3
53PUR7_ARCFU (O28996) Putative phosphoribosylaminoimidazole-succin... 30 5.3
54RPOC1_PANGI (Q68S15) DNA-directed RNA polymerase beta' chain (EC... 30 5.3
55RPOC1_ACOGR (Q5QA71) DNA-directed RNA polymerase beta' chain (EC... 30 5.3
56RPOC1_ACOCL (Q3V543) DNA-directed RNA polymerase gamma chain (EC... 30 5.3
57RPOC1_AMBTC (P60287) DNA-directed RNA polymerase beta' chain (EC... 30 6.9
58RPOC1_CALFE (Q7YJX9) DNA-directed RNA polymerase beta' chain (EC... 30 6.9
59RPOC_PSEPU (P19176) DNA-directed RNA polymerase beta' chain (EC ... 30 6.9
60NGAP_HUMAN (Q9UJF2) Ras GTPase-activating protein nGAP (RAS prot... 30 6.9
61ACH1_KLULA (Q6CNR2) Acetyl-CoA hydrolase (EC 3.1.2.1) (Acetyl-Co... 30 6.9
62RPOC1_SPIOL (P11705) DNA-directed RNA polymerase beta' chain (EC... 30 6.9
63RPOC_METCA (Q60A05) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0
64RPOC_BRUSU (Q8G070) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0
65RPOC_BRUME (Q8YHP7) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0
66RPOC_BRUAB (Q57CP9) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0
67RPOC1_PHYPA (P60288) DNA-directed RNA polymerase beta' chain (EC... 29 9.0
68RPOC_AGRT5 (Q8UE09) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0
69RPOC_PSEU2 (Q4ZMN8) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0
70RPOC_PSESM (Q889X7) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0
71RPOC_PSEPK (Q88QP1) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0
72RPOC_PSEPF (Q3K5Y2) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0
73RPOC_PSEF5 (Q4K527) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0
74RPOC_PSEAE (Q9HWC9) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0
75RPOC_PSE14 (Q48D30) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0
76MTE1_HERAU (P25266) Modification methylase HgiEI (EC 2.1.1.37) (... 29 9.0
77RPOC_RHIME (Q92QH6) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0
78RPOC_RHILO (Q98N65) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0
79GLB5_OLIMA (Q7M413) Hemoglobin, extracellular, major globin chai... 29 9.0
80RPOC1_EUCGG (Q49L07) DNA-directed RNA polymerase beta' chain (EC... 29 9.0 
>DNM3B_MOUSE (O88509) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)|
           (Dnmt3b) (DNA methyltransferase MmuIIIB) (DNA MTase
           MmuIIIB) (M.MmuIIIB)
          Length = 859

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
 Frame = -3

Query: 476 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 297
           +RVLS++ G+    + L  LGI ++  ++ E    +  +        +  G ++ +  + 
Sbjct: 581 IRVLSLFDGIATGYLVLKELGIKVEKYIASEVCAESIAV-----GTVKHEGQIKYVNDVR 635

Query: 296 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVN-AAMGM---DSKKYFEFVRVLNRVR 129
           K+    +E    E+G FDLV+GG+   C   + VN A  G+     + +FEF  +LN  R
Sbjct: 636 KITKKNIE----EWGPFDLVIGGS--PCNDLSNVNPARKGLYEGTGRLFFEFYHLLNYTR 689
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>DNM3B_HUMAN (Q9UBC3) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)|
           (Dnmt3b) (DNA methyltransferase HsaIIIB) (DNA MTase
           HsaIIIB) (M.HsaIIIB)
          Length = 853

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
 Frame = -3

Query: 476 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 297
           +RVLS++ G+    + L  LGI +   V+ E  + +  +        +  G ++ +  + 
Sbjct: 575 IRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAV-----GTVKHEGNIKYVNDV- 628

Query: 296 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVN-AAMGM---DSKKYFEFVRVLNRVR 129
               ++ +   +E+G FDLV+GG+   C   + VN A  G+     + +FEF  +LN  R
Sbjct: 629 ---RNITKKNIEEWGPFDLVIGGS--PCNDLSNVNPARKGLYEGTGRLFFEFYHLLNYSR 683
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>MTF1_FUSNU (P34906) Modification methylase FnuDI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase FnuDI) (M.FnuDI)
          Length = 344

 Score = 36.2 bits (82), Expect = 0.074
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
 Frame = -3

Query: 476 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 297
           +++LS++SG GG ++   R G     ++   E D      K  W   E++   +      
Sbjct: 1   MKLLSLFSGAGGLDLGFERAGFE---IIVANEYD------KTIWETYEKNHKAK------ 45

Query: 296 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMD---SKKYFEFVRVLNRVR 129
            +K D+ E L +E    D ++GG    C+  +   +  G++    K ++E++R+L  ++
Sbjct: 46  LIKKDIREILSEELPKSDGIIGG--PPCQSWSEAGSLRGINDPRGKLFYEYIRILKDIQ 102
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>DNM3A_HUMAN (Q9Y6K1) DNA (cytosine-5)-methyltransferase 3A (EC 2.1.1.37)|
           (Dnmt3a) (DNA methyltransferase HsaIIIA) (DNA MTase
           HsaIIIA) (M.HsaIIIA)
          Length = 909

 Score = 36.2 bits (82), Expect = 0.074
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
 Frame = -3

Query: 476 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKI-LKRWWAKTEQSGVLRQLPGI 300
           +RVLS++ G+    + L  LGI +   ++ E  + +  + + R   K    G +R     
Sbjct: 631 IRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS---- 686

Query: 299 WKLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVN-AAMGM---DSKKYFEFVRVLNRV 132
                 V +   +E+G FDLV+GG+   C   + VN A  G+     + +FEF R+L+  
Sbjct: 687 ------VTQKHIQEWGPFDLVIGGS--PCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDA 738

Query: 131 R 129
           R
Sbjct: 739 R 739
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>DNMT2_HUMAN (O14717) DNA (cytosine-5)-methyltransferase-like protein 2 (Dnmt2)|
           (DNA methyltransferase homolog HsaIIP) (DNA MTase
           homolog HsaIIP) (M.HsaIIP) (PuMet)
          Length = 391

 Score = 36.2 bits (82), Expect = 0.074
 Identities = 33/126 (26%), Positives = 58/126 (46%)
 Frame = -3

Query: 476 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 297
           LRVL +YSGVGG   AL    IP + V +I+ + V  ++ K  +  T+   + + + GI 
Sbjct: 4   LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQL--LAKTIEGIT 61

Query: 296 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMDSKKYFEFVRVLNRVRSMHA 117
             + D L         FD+++      C+  T +     M   +   F+ +L+ +  +  
Sbjct: 62  LEEFDRL--------SFDMILMS--PPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQK 111

Query: 116 LFK*LL 99
           L K +L
Sbjct: 112 LPKYIL 117
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>DNM3A_MOUSE (O88508) DNA (cytosine-5)-methyltransferase 3A (EC 2.1.1.37)|
           (Dnmt3a) (DNA methyltransferase MmuIIIA) (DNA MTase
           MmuIIIA) (M.MmuIIIA)
          Length = 908

 Score = 36.2 bits (82), Expect = 0.074
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
 Frame = -3

Query: 476 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKI-LKRWWAKTEQSGVLRQLPGI 300
           +RVLS++ G+    + L  LGI +   ++ E  + +  + + R   K    G +R     
Sbjct: 630 IRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS---- 685

Query: 299 WKLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVN-AAMGM---DSKKYFEFVRVLNRV 132
                 V +   +E+G FDLV+GG+   C   + VN A  G+     + +FEF R+L+  
Sbjct: 686 ------VTQKHIQEWGPFDLVIGGS--PCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDA 737

Query: 131 R 129
           R
Sbjct: 738 R 738
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>MTBR_BPRH1 (P09915) Modification methylase Rho11sI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase Rho11sI) (Bsu P11s)
           (M.Rho11sI)
          Length = 503

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
 Frame = -3

Query: 476 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 297
           LRV+S++SG+G  E AL  +G+  + V     S++++  +K + A       L       
Sbjct: 4   LRVMSLFSGIGAFEAALRNIGVEYELV---GFSEIDKYAIKSYCAIHNADEQLN------ 54

Query: 296 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMDSKK---YFEFVRVLNRVRS 126
               DV +   K+   FDL+VGG+   C+  +      G +  +   +F+++  L   + 
Sbjct: 55  --FGDVSKIDKKKLPEFDLLVGGS--PCQSFSVAGYRKGFEDTRGTLFFQYIDTLKEKQP 110

Query: 125 MHALFK 108
            + +F+
Sbjct: 111 RYFVFE 116
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>MTH3_HAEAE (P20589) Modification methylase HaeIII (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase HaeIII) (M.HaeIII)
          Length = 330

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
 Frame = -3

Query: 476 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 297
           + ++S++SG GG ++   + G  + C    ++S         W  KT +S    +L    
Sbjct: 1   MNLISLFSGAGGLDLGFQKAGFRIICANEYDKS--------IW--KTYESNHSAKL---- 46

Query: 296 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMD---SKKYFEFVRVLNRVRS 126
            +K D+ +    EF   D ++GG    C+  +   +  G+D    K ++E++R+L + + 
Sbjct: 47  -IKGDISKISSDEFPKCDGIIGG--PPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKP 103

Query: 125 MHAL 114
           +  L
Sbjct: 104 IFFL 107
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>DNMT2_MOUSE (O55055) DNA (cytosine-5)-methyltransferase-like protein 2 (Dnmt2)|
           (DNA methyltransferase homolog MmuIIP) (DNA MTase
           homolog MmuIIP) (M.MmuIIP) (Met-2)
          Length = 415

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -3

Query: 476 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILK 354
           LRVL +YSG+GG   AL    IP   V +I+ + V  ++ K
Sbjct: 4   LRVLELYSGIGGMHHALRESHIPAHVVAAIDVNTVANEVYK 44
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>RPOC1_LACSA (Q56P12) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 689

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S + ++ P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQAFVIRDLIRKHLASNIGVAKSQIRKKKPIV 437

Query: 299 WKLKTDVLED 270
           W++  ++L+D
Sbjct: 438 WEILQEILDD 447
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>MTBS_BPSPR (P00476) Modification methylase SPRI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase SPRI) (M.SPRI)
          Length = 439

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
 Frame = -3

Query: 476 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 297
           LRV+S++SG+G  E AL  +G+  + V     S++++  +K + A       L       
Sbjct: 4   LRVMSLFSGIGAFEAALRNIGVGYELV---GFSEIDKYAVKSFCAIHNVDEQLN------ 54

Query: 296 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMDSKK---YFEFVRVLNRVRS 126
               DV +   K+   FDL+VGG+   C+  +      G +  +   +F++V  L   + 
Sbjct: 55  --FGDVSKIDKKKLPEFDLLVGGS--PCQSFSVAGHRKGFEDTRGTLFFQYVETLKEKQP 110

Query: 125 MHALFK 108
              +F+
Sbjct: 111 KFFVFE 116
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>PMT1_SCHPO (P40999) DNA methyltransferase homolog pmt1 (SpIM.SpoI) (M.SpomI)|
          Length = 330

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 29/113 (25%), Positives = 46/113 (40%)
 Frame = -3

Query: 476 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 297
           LRVL +YSG+GG   AL+   IP   V +I   D+N           + + +     G  
Sbjct: 7   LRVLELYSGIGGMHYALNLANIPADIVCAI---DIN----------PQANEIYNLNHGKL 53

Query: 296 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMDSKKYFEFVRVLN 138
               D+     K+F  FD  +     SC+  T +     +   +   F+ +LN
Sbjct: 54  AKHMDISTLTAKDFDAFDCKLWTMSPSCQPFTRIGNRKDILDPRSQAFLNILN 106
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>RPOC1_PSINU (Q8WI25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 674

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWA---KTEQSGVLRQLPGI 300
           YSG    V G  + LHR G+P +  + + ++ V R ++ R+ A   +  ++ +  + P I
Sbjct: 383 YSGRSVIVVGPSLPLHRCGLPREMAIELFQAFVIRGLIGRYLAQNLRDAKNMIQNKEPII 442

Query: 299 WKLKTDVLE 273
           WK+  DV++
Sbjct: 443 WKILRDVMQ 451
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>RPOC_BACFR (Q64NJ8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1427

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -3

Query: 449 VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDV 279
           V G E+ +H  GIP      + +  + RK+++R   KT +S    V R+ P IW    D+
Sbjct: 368 VVGPELRMHECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVIW----DI 423

Query: 278 LEDLFK 261
           LE + K
Sbjct: 424 LEHVMK 429
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>RPOC_BACFN (Q5L898) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1427

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -3

Query: 449 VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDV 279
           V G E+ +H  GIP      + +  + RK+++R   KT +S    V R+ P IW    D+
Sbjct: 368 VVGPELRMHECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVIW----DI 423

Query: 278 LEDLFK 261
           LE + K
Sbjct: 424 LEHVMK 429
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>RPOC_PELCD (Q3A6Q3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1396

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    V G E+ LH+ G+P K  + + +  +  K+ +R +  T +S    V ++   +
Sbjct: 349 YSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYNKLEERGFCTTIKSAKKMVEKEKSEV 408

Query: 299 WKLKTDVLEDLFKE 258
           W    DVLE++ KE
Sbjct: 409 W----DVLEEVIKE 418
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>RPOC_PSEHT (Q3ILP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1390

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -3

Query: 443 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 273
           G  + LH+ G+P K  + + +  +  K+ +R  A T ++    V R++P +W    DVL+
Sbjct: 358 GPTLKLHQCGLPKKMALELFKPFIYGKLERRGMATTIKAAKKMVEREMPEVW----DVLD 413

Query: 272 DLFKE 258
           ++ +E
Sbjct: 414 EVIRE 418
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>EZRA_LACLA (Q9CDR6) Septation ring formation regulator ezrA|
          Length = 576

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/99 (22%), Positives = 44/99 (44%)
 Frame = -3

Query: 548 MKYAFQTDTIAYVLSVLKDIYPNGLRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVN 369
           M Y+  +  +  V++ L+DI  N +++    +G+   E A   +          E  D  
Sbjct: 380 MPYSILSRRVNSVVNALEDIEKNQIKISDTLTGLRDEERAAQEIA---------ERFDSE 430

Query: 368 RKILKRWWAKTEQSGVLRQLPGIWKLKTDVLEDLFKEFG 252
            + +KR+  K    G+ +    ++    D +++LFKE G
Sbjct: 431 LRTIKRYVEKCNLPGLPKDYLDLFFTTGDRVQNLFKELG 469
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>RPOC1_SILLA (Q589B9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 687

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ + R ++++  A      +S +  + P I
Sbjct: 381 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFIIRGLIRQHLASNIGVAKSKIREKEPII 440

Query: 299 WKLKTDVLE 273
           WK+  +V++
Sbjct: 441 WKILQEVMQ 449
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>RPOC_GLUOX (Q5FTX8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1439

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    V G E+ LH+ G+P K  + + +  +  K+ K   A T ++    V ++ P +
Sbjct: 393 YSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYSKLEKYGHATTIKAAKRMVEKERPEV 452

Query: 299 WKLKTDVLEDLFKE 258
           W    D+LE++ +E
Sbjct: 453 W----DILEEVIRE 462
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>RPOC_PORGI (Q7MX26) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1433

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -3

Query: 449 VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDV 279
           V G E+ +H  G+P      + +  + RK+++R   KT +S    V R+ P IW    D+
Sbjct: 369 VVGPELKMHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVIW----DI 424

Query: 278 LEDLFK 261
           LE + K
Sbjct: 425 LEYVMK 430
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>RPOC_CARHZ (Q3A9Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1152

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWA---KTEQSGVLRQLPGI 300
           YSG    V G E+ LH+ G+P +  + + +  V +K++    A   K+ +  V R  P +
Sbjct: 338 YSGRSVIVVGPELKLHQCGLPKEMALELFKPFVMKKLVADGIAHNIKSAKRMVERVKPEV 397

Query: 299 WKLKTDVLEDLFKE 258
           W    DVLE++ KE
Sbjct: 398 W----DVLEEVIKE 407
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>ZN614_HUMAN (Q8N883) Zinc finger protein 614|
          Length = 585

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 54  SLVEDRW*RTHNYARQQLLKKCVHTPHSI-KNTNELKIFFGVHPHSCIHCRPTSTR 218
           +L+  +  RTH   R     KC+HT   + K+    KI     PH+CI C  T  R
Sbjct: 164 TLLHGKHERTHTKTRFSENAKCIHTKFQVFKHQRTQKI---EKPHACIECEQTFLR 216
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>RPOC_CORJK (Q4JT33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1323

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    + G ++ LH+ G+P    + + +  V ++++++ +A+  +S    V RQ P +
Sbjct: 424 YSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNIKSAKRMVERQRPEV 483

Query: 299 WKLKTDVLEDLFKE 258
           W    DVLE+   E
Sbjct: 484 W----DVLEEAIAE 493
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>RPOC1_ANTFO (Q85CL6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 681

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWA---KTEQSGVLRQLPGI 300
           YSG    V G  + LH  G+P +  V + ++ V R ++ R+ A   +  +S +  + P I
Sbjct: 378 YSGRSVIVAGPYLPLHECGLPKEMAVELFQAFVIRGLIGRYLAPNLRAAKSMIQDKEPII 437

Query: 299 WKLKTDVLE 273
           WK+  +V++
Sbjct: 438 WKILKEVIQ 446
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>RPOC_PORCN (O33431) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit) (Fragment)
          Length = 1159

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    V G E  +H  G+P      + +  V RK+L+R   KT +S    V ++ P +
Sbjct: 287 YSGRSVIVVGPEPKMHECGLPKYMAAELYKPFVIRKLLERGIVKTVKSARRIVDKKGPEV 346

Query: 299 WKLKTDVLEDLFK 261
           W    D+LE + K
Sbjct: 347 W----DILEHVIK 355
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>RPOC_CHLTE (Q8KG14) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1490

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    V G E+ LH+ G+P    + + +  V R++++R  AK+ +S    + ++ P +
Sbjct: 388 YSGRSVIVVGPELKLHQCGLPKSMAIELFQPFVIRRLVERGIAKSVKSAKKLIDKKDPVV 447

Query: 299 WKLKTDVLE 273
           W    DVLE
Sbjct: 448 W----DVLE 452
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>MTBP_BPPHT (P68586) Modification methylase Phi3TI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase Phi3TI) (M.Phi3TI)
          Length = 443

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 31/105 (29%), Positives = 48/105 (45%)
 Frame = -3

Query: 476 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 297
           LRV+S++SG+G  E AL  +G+  +    I  S++++  +K + A    S  L  +  I 
Sbjct: 4   LRVMSLFSGIGAFEAALRNIGVDYEL---IGFSEIDKYAIKSYCAIHNVSETL-NVGDIS 59

Query: 296 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMDSKKY 162
           K K D           FDL+  G    C    T + A G D  +Y
Sbjct: 60  KAKKD-------NIPYFDLLTSG--FPC---PTFSVAGGRDGMEY 92
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>MTBP_BACSU (P68585) Phi-3T prophage-derived modification methylase Phi3TI (EC|
           2.1.1.37) (Cytosine-specific methyltransferase Phi3TI)
           (M.Phi3TI)
          Length = 443

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 31/105 (29%), Positives = 48/105 (45%)
 Frame = -3

Query: 476 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 297
           LRV+S++SG+G  E AL  +G+  +    I  S++++  +K + A    S  L  +  I 
Sbjct: 4   LRVMSLFSGIGAFEAALRNIGVDYEL---IGFSEIDKYAIKSYCAIHNVSETL-NVGDIS 59

Query: 296 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMDSKKY 162
           K K D           FDL+  G    C    T + A G D  +Y
Sbjct: 60  KAKKD-------NIPYFDLLTSG--FPC---PTFSVAGGRDGMEY 92
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>RPOC_CHLCH (Q3ATP4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1502

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    V G E+ LH  G+P    + + +  V R+++ R  AK+ +S    + R+ P +
Sbjct: 388 YSGRSVIVVGPELKLHECGLPKSMAIELFQPFVIRRLVDRGIAKSVKSAKKLIDRKDPVV 447

Query: 299 WKLKTDVLE 273
           W    DVLE
Sbjct: 448 W----DVLE 452
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>RPOC_SHEVI (Q9KW13) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1409

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = -3

Query: 443 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 273
           G  + LH+ G+P K  + + +  +  K+  R  A T ++    V R++P +W    DVL+
Sbjct: 358 GPTLRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVPEVW----DVLD 413

Query: 272 DLFKE 258
           D+ +E
Sbjct: 414 DVIRE 418
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>MTBB_BPSPB (P09389) Modification methylase SPBetaI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase SPBetaI)
           (M.SPBetaI) (Fragments)
          Length = 257

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 31/105 (29%), Positives = 48/105 (45%)
 Frame = -3

Query: 476 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 297
           LRV+S++SG+G  E AL  +G+  +    I  S++++  +K + A    S  L  +  I 
Sbjct: 4   LRVMSLFSGIGAFEAALRNIGVDYEL---IGFSEIDKYAIKSYCAIHNVSETL-NVGDIS 59

Query: 296 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMDSKKY 162
           K K D           FDL+  G    C    T + A G D  +Y
Sbjct: 60  KAKKD-------NIPYFDLLTSG--FPC---PTFSVAGGRDGMEY 92
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>MTAA_SYNP2 (P34882) Modification methylase AquI alpha subunit (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase AquI alpha subunit)
           (M.AquI alpha subunit) (M.AquiA)
          Length = 248

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
 Frame = -3

Query: 473 RVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIWK 294
           +++S++SG GG ++  H  G      V  + S  N   L         + V+     I  
Sbjct: 4   KLISLFSGAGGMDIGFHAAGFSTAVAVEQDPSCCNTLRL-----NMPDTPVIE--GDITS 56

Query: 293 LKTDVLEDLFKEFG-GFDLVVGGNYDSCRGGTTVNAAMGMDSKK---YFEFVRVL 141
           + T V+ +  K      DLV+GG    C+  +     MGMD  +     EF+RV+
Sbjct: 57  ITTQVILEAAKVNPLEIDLVIGG--PPCQSFSLAGKRMGMDDPRGMLVLEFLRVV 109
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>RPOC1_SINAL (P46819) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 688

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 386 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIV 445

Query: 299 WKLKTDVLE 273
           W++  +V++
Sbjct: 446 WEILQEVMQ 454
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>RPOC1_ARATH (P56763) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 680

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIV 437

Query: 299 WKLKTDVLE 273
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>MTC1_HERAU (P25263) Modification methylase HgiCI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase HgiCI) (M.HgiCI)
          Length = 420

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = -3

Query: 476 LRVLSIYSGVGGA----EVALHRLGIPLKCVVSIE 384
           L+ + +++G+GG     E A+H LGI   CV+S E
Sbjct: 2   LKFIDLFAGIGGMRLGFEQAMHELGIETACVLSSE 36
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>RPOC_NEIMB (Q9K1J1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1391

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -3

Query: 443 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 273
           G  + LH+ G+P K  + + +  +  K+ K+  A T ++    V +++P +W    D+LE
Sbjct: 360 GPYLRLHQCGLPKKMALELFKPFIFHKLEKQGLASTVKAAKKLVEQEVPEVW----DILE 415

Query: 272 DLFKE 258
           ++ +E
Sbjct: 416 EVIRE 420
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>RPOC_NEIMA (Q9JX03) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1391

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -3

Query: 443 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 273
           G  + LH+ G+P K  + + +  +  K+ K+  A T ++    V +++P +W    D+LE
Sbjct: 360 GPYLRLHQCGLPKKMALELFKPFIFHKLEKQGLASTVKAAKKLVEQEVPEVW----DILE 415

Query: 272 DLFKE 258
           ++ +E
Sbjct: 416 EVIRE 420
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>RPOC_NEIG1 (Q5F5R6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1391

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -3

Query: 443 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 273
           G  + LH+ G+P K  + + +  +  K+ K+  A T ++    V +++P +W    D+LE
Sbjct: 360 GPYLRLHQCGLPKKMALELFKPFIFHKLEKQGLASTVKAAKKLVEQEVPEVW----DILE 415

Query: 272 DLFKE 258
           ++ +E
Sbjct: 416 EVIRE 420
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>RPOC1_SOYBN (Q8HVY4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 687

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/69 (23%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKT---EQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ + R ++++ +A      +S +  + P +
Sbjct: 380 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGIAKSKIREKEPIV 439

Query: 299 WKLKTDVLE 273
           W++  +V++
Sbjct: 440 WEILQEVMQ 448
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>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1333

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    + G ++ LH  G+P    + + +  V +++++  +A+  +S    V RQ P +
Sbjct: 424 YSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQRPEV 483

Query: 299 WKLKTDVLEDLFKE 258
           W    DVLE+   E
Sbjct: 484 W----DVLEEAISE 493
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>RPOC_COREF (Q8FS96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1333

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    + G ++ LH  G+P    + + +  V +++++  +A+  +S    V RQ P +
Sbjct: 424 YSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQRPEV 483

Query: 299 WKLKTDVLEDLFKE 258
           W    DVLE+   E
Sbjct: 484 W----DVLEEAISE 493
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>RPOC1_LOTJA (Q9BBS8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 682

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ + R ++++ +A      +S +  + P +
Sbjct: 380 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRSLIRKHFASNIGVAKSKIREKEPIV 439

Query: 299 WKLKTDVL 276
           W++  +V+
Sbjct: 440 WEILQEVM 447
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>RPOC1_TOBAC (P12116) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 680

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 377 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIV 436

Query: 299 WKLKTDVLE 273
           W++  +V++
Sbjct: 437 WEILQEVMQ 445
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>RPOC1_CUCSA (Q4VZP2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 680

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/69 (23%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ + R ++++ +A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIV 437

Query: 299 WKLKTDVLE 273
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC_DESDG (Q30X04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1386

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    V G ++ LH+ G+P K  + + +  +  K+ +R  A T +S    V R+   +
Sbjct: 355 YSGRSVIVVGPKLKLHQCGLPKKMALELFKPFIYSKLEERGLASTIKSAKKMVEREELVV 414

Query: 299 WKLKTDVLEDLFKEF 255
           W    D+LE++ +E+
Sbjct: 415 W----DILEEVVREY 425
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>RPOC_DESVH (Q727C6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1385

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    V G ++ LH+ G+P K  + + +  +  ++ KR  A T +S    V R+   +
Sbjct: 355 YSGRSVIVVGPKLKLHQCGLPKKMALELFKPFIYSELEKRGLASTIKSAKKMVEREELVV 414

Query: 299 WKLKTDVLEDLFKEF 255
           W    D+LE++ +E+
Sbjct: 415 W----DILEEVVREY 425
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>RPOC1_NICTO (Q33C47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 681

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKEPIV 437

Query: 299 WKLKTDVLE 273
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC1_NICSY (Q3C1G8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 681

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIV 437

Query: 299 WKLKTDVLE 273
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC1_ATRBE (Q8S8Y0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 681

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIV 437

Query: 299 WKLKTDVLE 273
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC1_SOLTU (Q2VEI5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 687

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 384 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIV 443

Query: 299 WKLKTDVLE 273
           W++  +V++
Sbjct: 444 WEILQEVMQ 452
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>CAN1_RABIT (P06815) Calpain-1 catalytic subunit (EC 3.4.22.52) (Calpain-1|
           large subunit) (Calcium-activated neutral proteinase 1)
           (CANP 1) (Calpain mu-type) (muCANP) (Micromolar-calpain)
           (Fragment)
          Length = 302

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 29/102 (28%), Positives = 45/102 (44%)
 Frame = -3

Query: 413 IPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIWKLKTDVLEDLFKEFGGFDLVV 234
           +P + V+S EE D N K L R  A  +    +R+L  I    T   +DL  +        
Sbjct: 120 LPDEQVLSAEEIDENFKALFRQLAGEDLEISVRELQTILNRITSKHKDLRTK-------- 171

Query: 233 GGNYDSCRGGTTVNAAMGMDSKKYFEFVRVLNRVRSMHALFK 108
           G + +SCR    +    G       EF  + NR+R+  A+F+
Sbjct: 172 GFSMESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLAIFR 213
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>PUR7_ARCFU (O28996) Putative phosphoribosylaminoimidazole-succinocarboxamide|
           synthase (EC 6.3.2.6) (SAICAR synthetase)
          Length = 331

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -3

Query: 419 LGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPG 303
           +G P +C  S +  +V++++L+ ++ KTE    +RQL G
Sbjct: 237 VGTPDECRFSFDGFEVSKELLREYYRKTEWYDKVRQLKG 275
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>RPOC1_PANGI (Q68S15) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 682

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIV 437

Query: 299 WKLKTDVLE 273
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC1_ACOGR (Q5QA71) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 682

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKT---EQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGIAKSKIREKEPIV 437

Query: 299 WKLKTDVLE 273
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC1_ACOCL (Q3V543) DNA-directed RNA polymerase gamma chain (EC 2.7.7.6) (RNAP|
           gamma subunit) (Transcriptase gamma chain) (RNA
           polymerase gamma subunit)
          Length = 682

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKT---EQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGIAKSKIREKEPIV 437

Query: 299 WKLKTDVLE 273
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC1_AMBTC (P60287) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 680

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKT---EQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHVASNIGIAKSKIREKEPIV 437

Query: 299 WKLKTDVLE 273
           W++   V+E
Sbjct: 438 WEILQKVME 446
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>RPOC1_CALFE (Q7YJX9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 678

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKT---EQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHVASNIGIAKSKIREKEPIV 437

Query: 299 WKLKTDVLE 273
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC_PSEPU (P19176) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1398

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = -3

Query: 482 NGLRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQ 312
           +G  V+S+     G  + LH+ G+P K  + + +  +  K+  R  A T ++    V R+
Sbjct: 350 SGRSVISV-----GPTLRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERE 404

Query: 311 LPGIWKLKTDVLED 270
           LP +W +  +V+ +
Sbjct: 405 LPEVWDVLAEVIRE 418
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>NGAP_HUMAN (Q9UJF2) Ras GTPase-activating protein nGAP (RAS protein|
           activator-like 1)
          Length = 1139

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 588 KSVYSKPTGQDCCYEIRFSNGHDCL-CSVGPKRHISKWFE 472
           K ++S   GQD C+E+ + +G  C  C+   +R   KW E
Sbjct: 114 KPLHSSILGQDFCFEVTYLSGSKCFSCNSASER--DKWME 151
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>ACH1_KLULA (Q6CNR2) Acetyl-CoA hydrolase (EC 3.1.2.1) (Acetyl-CoA deacylase)|
           (Acetyl-CoA acylase)
          Length = 523

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 3   LLLSCTSPSYHLQVMTPSLVEDRW*RTHNYARQQLLKKCVHTPHSIKN 146
           ++ +C  P Y        ++ D   R+ +YA+   L KC+H PH +KN
Sbjct: 465 IIKNCAHPDYQ------PILTDYLDRSEHYAK---LHKCMHEPHMLKN 503
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>RPOC1_SPIOL (P11705) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 677

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 300
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +  +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIV 437

Query: 299 WKLKTDVLE 273
           WK+  +V++
Sbjct: 438 WKILQEVMQ 446
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>RPOC_METCA (Q60A05) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1400

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    V G  + LH+ G+P K  + + +  +  K+  R  A T ++    V R+ P +
Sbjct: 349 YSGRSVIVVGPTLRLHQCGLPKKMALELFKPFIFSKLQFRGLATTIKAAKKMVEREAPEV 408

Query: 299 WKLKTDVLEDLFKE 258
           W    D+L+++ +E
Sbjct: 409 W----DILDEVIRE 418
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>RPOC_BRUSU (Q8G070) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1400

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    V G E+ LH+ G+P K  + + +  +  ++  + ++ T +     V ++ P +
Sbjct: 351 YSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKERPEV 410

Query: 299 WKLKTDVLEDLFKE 258
           W    D+L+++ +E
Sbjct: 411 W----DILDEVIRE 420
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>RPOC_BRUME (Q8YHP7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1400

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    V G E+ LH+ G+P K  + + +  +  ++  + ++ T +     V ++ P +
Sbjct: 351 YSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKERPEV 410

Query: 299 WKLKTDVLEDLFKE 258
           W    D+L+++ +E
Sbjct: 411 W----DILDEVIRE 420
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>RPOC_BRUAB (Q57CP9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1400

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    V G E+ LH+ G+P K  + + +  +  ++  + ++ T +     V ++ P +
Sbjct: 351 YSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKERPEV 410

Query: 299 WKLKTDVLEDLFKE 258
           W    D+L+++ +E
Sbjct: 411 W----DILDEVIRE 420
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>RPOC1_PHYPA (P60288) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 679

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWA---KTEQSGVLRQLPGI 300
           YSG    V G  ++LH+ G+P +  + + ++ V R ++ R  A   +  +S +  + P I
Sbjct: 375 YSGRSVIVVGPFLSLHQCGLPREMAIELFQAFVIRGLIGRHLAPNLRAAKSMIQNKEPII 434

Query: 299 WKLKTDVLE 273
           WK+  ++++
Sbjct: 435 WKILQEIMQ 443
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>RPOC_AGRT5 (Q8UE09) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1402

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    V G E+ LH+ G+P K  + + +  +  ++  + ++ T +     V ++ P +
Sbjct: 351 YSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEV 410

Query: 299 WKLKTDVLEDLFKE 258
           W    D+L+++ +E
Sbjct: 411 W----DILDEVIRE 420
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>RPOC_PSEU2 (Q4ZMN8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1399

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -3

Query: 443 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 273
           G  + LH+ G+P K  + + +  +  K+  R  A T ++    V R+LP +W +  +V+ 
Sbjct: 358 GPTLRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIR 417

Query: 272 D 270
           +
Sbjct: 418 E 418
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>RPOC_PSESM (Q889X7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1399

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -3

Query: 443 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 273
           G  + LH+ G+P K  + + +  +  K+  R  A T ++    V R+LP +W +  +V+ 
Sbjct: 358 GPTLRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIR 417

Query: 272 D 270
           +
Sbjct: 418 E 418
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>RPOC_PSEPK (Q88QP1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1399

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -3

Query: 443 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 273
           G  + LH+ G+P K  + + +  +  K+  R  A T ++    V R+LP +W +  +V+ 
Sbjct: 358 GPTLRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIR 417

Query: 272 D 270
           +
Sbjct: 418 E 418
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>RPOC_PSEPF (Q3K5Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1399

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -3

Query: 443 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 273
           G  + LH+ G+P K  + + +  +  K+  R  A T ++    V R+LP +W +  +V+ 
Sbjct: 358 GPTLRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIR 417

Query: 272 D 270
           +
Sbjct: 418 E 418
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>RPOC_PSEF5 (Q4K527) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1399

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -3

Query: 443 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 273
           G  + LH+ G+P K  + + +  +  K+  R  A T ++    V R+LP +W +  +V+ 
Sbjct: 358 GPTLRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIR 417

Query: 272 D 270
           +
Sbjct: 418 E 418
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>RPOC_PSEAE (Q9HWC9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1399

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -3

Query: 443 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 273
           G  + LH+ G+P K  + + +  +  K+  R  A T ++    V R+LP +W +  +V+ 
Sbjct: 358 GPTLRLHQCGLPKKMALELFKPFIFGKLEGRGMATTIKAAKKMVERELPEVWDVLAEVIR 417

Query: 272 D 270
           +
Sbjct: 418 E 418
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>RPOC_PSE14 (Q48D30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1399

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -3

Query: 443 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 273
           G  + LH+ G+P K  + + +  +  K+  R  A T ++    V R+LP +W +  +V+ 
Sbjct: 358 GPTLRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIR 417

Query: 272 D 270
           +
Sbjct: 418 E 418
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>MTE1_HERAU (P25266) Modification methylase HgiEI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase HgiEI) (M.HgiEI)
          Length = 437

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/82 (20%), Positives = 39/82 (47%)
 Frame = -3

Query: 473 RVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIWK 294
           R + +++G+GG  + L  +G      V +  ++++++ +K +W      GV   L  I +
Sbjct: 5   RFIDLFAGIGGFRLGLEAVG-----GVCVASAEIDQQAIKVYWQNWPTDGVDHNLGDITQ 59

Query: 293 LKTDVLEDLFKEFGGFDLVVGG 228
           +         ++    D++VGG
Sbjct: 60  I---------QQLPAHDVLVGG 72
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>RPOC_RHIME (Q92QH6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1401

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    V G E+ LH+ G+P K  + + +  +  ++  + ++ T +     V ++ P +
Sbjct: 351 YSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEV 410

Query: 299 WKLKTDVLEDLFKE 258
           W    D+L+++ +E
Sbjct: 411 W----DILDEVIRE 420
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>RPOC_RHILO (Q98N65) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1398

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 300
           YSG    V G E+ LH+ G+P K  + + +  +  ++  + ++ T +     V ++ P +
Sbjct: 351 YSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKERPEV 410

Query: 299 WKLKTDVLEDLFKE 258
           W    D+L+++ +E
Sbjct: 411 W----DILDEVIRE 420
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>GLB5_OLIMA (Q7M413) Hemoglobin, extracellular, major globin chain a5|
          Length = 142

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -3

Query: 380 SDVNRKILKRWWAKTEQSGVLRQLPG--IWKLKTDVLEDLFKEFGGFDLVVGGNYDS 216
           + +NR ++KR WA+    G  R+L G  IW+   D+  ++    G F  V G + DS
Sbjct: 3   TSLNRLLVKRQWAEAYGEGTSRELLGNRIWE---DLFANMPDARGLFSRVNGNDIDS 56
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>RPOC1_EUCGG (Q49L07) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 682

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
 Frame = -3

Query: 458 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 300
           YSG    V G  + LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLPLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIV 437

Query: 299 WKLKTDVLE 273
           W++  +V++
Sbjct: 438 WEILQEVMQ 446


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,000,078
Number of Sequences: 219361
Number of extensions: 1850989
Number of successful extensions: 4890
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 4729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4881
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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