ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16f22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MOS_CERAE (P10650) Proto-oncogene serine/threonine-protein kinas... 30 4.4
2SRP_DROME (P52172) Box A-binding factor (ABF) (GATA-binding fact... 30 4.4
3CYAA_PASMU (Q05766) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophos... 29 7.6
4FCRL_RAT (Q3B8P2) Fc receptor-like and mucin-like 1 precursor 29 9.9

>MOS_CERAE (P10650) Proto-oncogene serine/threonine-protein kinase mos (EC|
           2.7.11.1) (c-mos) (Oocyte maturation factor mos)
          Length = 346

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 412 RPFLPTNFTPSVSQR*CSLISSPPLTYL 495
           RP+LP+ F+PSV  R CS  S  P   L
Sbjct: 8   RPYLPSEFSPSVDARPCSSPSELPAKLL 35



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>SRP_DROME (P52172) Box A-binding factor (ABF) (GATA-binding factor-B)|
            (Transcription factor GATA-B) (dGATA-B) (Protein serpent)
          Length = 1264

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
 Frame = +1

Query: 205  NLQAEALWNNEDNNSIKLCTSRESVVRDHDLAEGWGLETRTLSFEGPDLVLLLFRSALME 384
            N    +++NN +NN+     +   +++ +  A+     + + S     L+  L  +++  
Sbjct: 1028 NNNNSSIFNNNNNNNSSSNENNNKLIQKYLQAQQLSSSSNSGSTSDHQLLAQLLPNSITA 1087

Query: 385  AITASAPGPRPFLPTNFTPSVSQR*CS------LISSPPLTYLSSIACCRDSNV 528
            A  A+A      + T      SQ  CS      +++S P T  S+++    SN+
Sbjct: 1088 AAAAAAAAAAAAIKTEALSLTSQANCSTASAGLMVTSTPTTASSTLSSLSHSNI 1141



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>CYAA_PASMU (Q05766) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 838

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 316 ETRTLSFEGPDLVLLLFRSALMEAITASAPGPR 414
           E RTL FEGP+ +LL  +  L   I   AP P+
Sbjct: 608 EIRTLHFEGPNAILLALK-VLSNKIHRGAPSPK 639



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>FCRL_RAT (Q3B8P2) Fc receptor-like and mucin-like 1 precursor|
          Length = 347

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = +1

Query: 316 ETRTLSFEGPDLVLLLFRSALMEAIT------ASAPGPRPFLPTNFTPSVSQR*CSLISS 477
           E R +S + P+L + +   AL +  T      A APGP P LP   TPS  Q   S  S 
Sbjct: 252 EDRQISKQSPELEIRV--QALQKPATPETPPPAKAPGPLPLLP---TPSDEQPVFS-FSD 305

Query: 478 PPLTY 492
           P LTY
Sbjct: 306 PYLTY 310


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,189,844
Number of Sequences: 219361
Number of extensions: 1468331
Number of successful extensions: 3373
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3370
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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