>ref|XM_473484.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2436

 Score =  226 bits (114), Expect = 6e-56
 Identities = 170/189 (89%)
 Strand = Plus / Minus

                                                                        
Query: 348  tttagttctactgctgttccggtccgccttaatggaagcaatcacagcatcagccccagg 407
            ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct: 2388 tttagttctactgctgttccgctctgccttaatggatgcaatcacagcatcagcccccgg 2329

                                                                        
Query: 408  accaagacctttcctgccaaccaatttcacacccagtgtttcacagaggtaatgcagcct 467
            ||||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||||
Sbjct: 2328 accaagacctttcctgccaactaatttcacaccaagcttttcacagaggtaatgcagcct 2269

                                                                        
Query: 468  natctcatctccccctctaacctatctcagctccatagcctgctgccgcgacagtaatgt 527
             || ||||| || |||||||||| ||| ||||||||||||||||| || || ||||||||
Sbjct: 2268 catttcatcacctcctctaacctctcttagctccatagcctgctgtcgtgatagtaatgt 2209

                     
Query: 528  atacacata 536
             || |||||
Sbjct: 2208 gtagacata 2200

>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
             complete sequence
          Length = 147806

 Score =  226 bits (114), Expect = 6e-56
 Identities = 170/189 (89%)
 Strand = Plus / Plus

                                                                         
Query: 348   tttagttctactgctgttccggtccgccttaatggaagcaatcacagcatcagccccagg 407
             ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct: 48102 tttagttctactgctgttccgctctgccttaatggatgcaatcacagcatcagcccccgg 48161

                                                                         
Query: 408   accaagacctttcctgccaaccaatttcacacccagtgtttcacagaggtaatgcagcct 467
             ||||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||||
Sbjct: 48162 accaagacctttcctgccaactaatttcacaccaagcttttcacagaggtaatgcagcct 48221

                                                                         
Query: 468   natctcatctccccctctaacctatctcagctccatagcctgctgccgcgacagtaatgt 527
              || ||||| || |||||||||| ||| ||||||||||||||||| || || ||||||||
Sbjct: 48222 catttcatcacctcctctaacctctcttagctccatagcctgctgtcgtgatagtaatgt 48281

                      
Query: 528   atacacata 536
              || |||||
Sbjct: 48282 gtagacata 48290

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  226 bits (114), Expect = 6e-56
 Identities = 170/189 (89%)
 Strand = Plus / Plus

                                                                            
Query: 348      tttagttctactgctgttccggtccgccttaatggaagcaatcacagcatcagccccagg 407
                ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct: 28040876 tttagttctactgctgttccgctctgccttaatggatgcaatcacagcatcagcccccgg 28040935

                                                                            
Query: 408      accaagacctttcctgccaaccaatttcacacccagtgtttcacagaggtaatgcagcct 467
                ||||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||||
Sbjct: 28040936 accaagacctttcctgccaactaatttcacaccaagcttttcacagaggtaatgcagcct 28040995

                                                                            
Query: 468      natctcatctccccctctaacctatctcagctccatagcctgctgccgcgacagtaatgt 527
                 || ||||| || |||||||||| ||| ||||||||||||||||| || || ||||||||
Sbjct: 28040996 catttcatcacctcctctaacctctcttagctccatagcctgctgtcgtgatagtaatgt 28041055

                         
Query: 528      atacacata 536
                 || |||||
Sbjct: 28041056 gtagacata 28041064

>dbj|AK073751.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068J22, full
            insert sequence
          Length = 2655

 Score =  226 bits (114), Expect = 6e-56
 Identities = 170/189 (89%)
 Strand = Plus / Minus

                                                                        
Query: 348  tttagttctactgctgttccggtccgccttaatggaagcaatcacagcatcagccccagg 407
            ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct: 2451 tttagttctactgctgttccgctctgccttaatggatgcaatcacagcatcagcccccgg 2392

                                                                        
Query: 408  accaagacctttcctgccaaccaatttcacacccagtgtttcacagaggtaatgcagcct 467
            ||||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||||
Sbjct: 2391 accaagacctttcctgccaactaatttcacaccaagcttttcacagaggtaatgcagcct 2332

                                                                        
Query: 468  natctcatctccccctctaacctatctcagctccatagcctgctgccgcgacagtaatgt 527
             || ||||| || |||||||||| ||| ||||||||||||||||| || || ||||||||
Sbjct: 2331 catttcatcacctcctctaacctctcttagctccatagcctgctgtcgtgatagtaatgt 2272

                     
Query: 528  atacacata 536
             || |||||
Sbjct: 2271 gtagacata 2263

>ref|NM_111874.1| Arabidopsis thaliana FLD (FLOWERING LOCUS D); amine oxidase/
            oxidoreductase AT3G10390 (FLD) mRNA, complete cds
          Length = 2370

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                        
Query: 376  ttaatggaagcaatcacagcatcagccccaggaccaagacctttcctgccaaccaatttc 435
            ||||| |||||||| || | |||||| |||  |||||||||||| || || |||| ||||
Sbjct: 2309 ttaatagaagcaatgactgaatcagctccaacaccaagaccttttctccccaccagtttc 2250

                                
Query: 436  acacccagtgtttcacagag 455
            || || ||||| ||||||||
Sbjct: 2249 actccaagtgtctcacagag 2230

>gb|AY849997.1| Arabidopsis thaliana ecotype Lz-0 flowering locus D (FLD) gene,
            complete cds
          Length = 3321

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                        
Query: 376  ttaatggaagcaatcacagcatcagccccaggaccaagacctttcctgccaaccaatttc 435
            ||||| |||||||| || | |||||| |||  |||||||||||| || || |||| ||||
Sbjct: 3229 ttaatagaagcaatgactgaatcagctccaacaccaagaccttttctccccaccagtttc 3170

                                
Query: 436  acacccagtgtttcacagag 455
            || || ||||| ||||||||
Sbjct: 3169 actccaagtgtctcacagag 3150

>gb|AY849996.1| Arabidopsis thaliana ecotype Landsberg erecta flowering locus D (FLD)
            gene, complete cds
          Length = 3322

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                        
Query: 376  ttaatggaagcaatcacagcatcagccccaggaccaagacctttcctgccaaccaatttc 435
            ||||| |||||||| || | |||||| |||  |||||||||||| || || |||| ||||
Sbjct: 3230 ttaatagaagcaatgactgaatcagctccaacaccaagaccttttctccccaccagtttc 3171

                                
Query: 436  acacccagtgtttcacagag 455
            || || ||||| ||||||||
Sbjct: 3170 actccaagtgtctcacagag 3151

>gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete
              sequence
          Length = 118107

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                          
Query: 376    ttaatggaagcaatcacagcatcagccccaggaccaagacctttcctgccaaccaatttc 435
              ||||| |||||||| || | |||||| |||  |||||||||||| || || |||| ||||
Sbjct: 115599 ttaatagaagcaatgactgaatcagctccaacaccaagaccttttctccccaccagtttc 115658

                                  
Query: 436    acacccagtgtttcacagag 455
              || || ||||| ||||||||
Sbjct: 115659 actccaagtgtctcacagag 115678

>gb|AC116552.2| Homo sapiens chromosome 16 clone RP11-21B21, complete sequence
          Length = 176797

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 478    ccccctctaacctatctcagctc 500
              |||||||||||||||||||||||
Sbjct: 136907 ccccctctaacctatctcagctc 136929

>gb|AC026467.6| Homo sapiens chromosome 16 clone RP11-410M9, complete sequence
          Length = 148054

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 478   ccccctctaacctatctcagctc 500
             |||||||||||||||||||||||
Sbjct: 13836 ccccctctaacctatctcagctc 13858

>emb|AL358858.19| Human DNA sequence from clone RP11-239I22 on chromosome 1 Contains part
             of the USH2A gene for Usher syndrome 2A (autosomal
             recessive, mild), complete sequence
          Length = 93856

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 87    aaattcgatgtcatgaaaatct 108
             ||||||||||||||||||||||
Sbjct: 55172 aaattcgatgtcatgaaaatct 55193

>gb|AF091877.1|HSUSH2A05 Homo sapiens Usher syndrome type IIa protein gene, exons 6, 7, and 8
          Length = 3175

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 87   aaattcgatgtcatgaaaatct 108
            ||||||||||||||||||||||
Sbjct: 2473 aaattcgatgtcatgaaaatct 2452

>gb|AC006659.1| Caenorhabditis elegans fosmid H16O14, complete sequence
          Length = 26644

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 87    aaattcgatgtcatgaaaatc 107
             |||||||||||||||||||||
Sbjct: 24878 aaattcgatgtcatgaaaatc 24858

>gb|AC010901.8| Homo sapiens BAC clone RP11-544J22 from 2, complete sequence
          Length = 78185

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 442  agtgtttcacagaggtaatgc 462
            |||||||||||||||||||||
Sbjct: 8592 agtgtttcacagaggtaatgc 8612

>gb|AC157092.6| Mus musculus 10 BAC RP24-397N4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 141291

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 471    ctcatctccccctctaaccta 491
              |||||||||||||||||||||
Sbjct: 137118 ctcatctccccctctaaccta 137138

>gb|AC158807.11| Mus musculus 10 BAC RP24-64G24 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 228073

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 471    ctcatctccccctctaaccta 491
              |||||||||||||||||||||
Sbjct: 203284 ctcatctccccctctaaccta 203264

>gb|AC009256.9| Drosophila melanogaster clone BACR03G18, complete sequence
          Length = 179931

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   tttagcagaaggttggggtt 313
             ||||||||||||||||||||
Sbjct: 83908 tttagcagaaggttggggtt 83927

>ref|XM_423709.1| PREDICTED: Gallus gallus similar to zinc finger protein 423; Smad-
           and Olf-interacting zinc finger protein; OLF-1/EBF
           associated zinc finger gene (LOC426032), partial mRNA
          Length = 2174

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 agcaatcacagcatcagccc 403
           ||||||||||||||||||||
Sbjct: 930 agcaatcacagcatcagccc 949

>ref|XM_414103.1| PREDICTED: Gallus gallus similar to zinc finger protein 423; Smad-
           and Olf-interacting zinc finger protein; OLF-1/EBF
           associated zinc finger gene (LOC415738), mRNA
          Length = 3481

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 agcaatcacagcatcagccc 403
           ||||||||||||||||||||
Sbjct: 73  agcaatcacagcatcagccc 92

>gb|AF346290.1|AF346288S3 Mus musculus GA-binding protein alpha-subunit (Gabpa) gene, exons 7
            through 10 and complete cds
          Length = 4922

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   aaacacaagcttgcttcaag 64
            ||||||||||||||||||||
Sbjct: 3130 aaacacaagcttgcttcaag 3111

>gb|AC147032.3| Pan troglodytes BAC clone RP43-98O19 from 7, complete sequence
          Length = 146431

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   atccagagaatcagtagtca 283
             ||||||||||||||||||||
Sbjct: 42781 atccagagaatcagtagtca 42800

>gb|AC146413.3| Pan troglodytes BAC clone RP43-34F2 from 7, complete sequence
          Length = 160890

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   atccagagaatcagtagtca 283
             ||||||||||||||||||||
Sbjct: 26961 atccagagaatcagtagtca 26980

>gb|AC125186.6| Mus musculus BAC clone RP23-302C16 from chromosome 1, complete sequence
          Length = 192042

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    ttcacacccagtgtttcaca 452
              ||||||||||||||||||||
Sbjct: 136735 ttcacacccagtgtttcaca 136716

>emb|AL590073.6| Human DNA sequence from clone RP11-242O9 on chromosome X, complete
             sequence
          Length = 80864

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   aacaacgaagacaacaactc 248
             ||||||||||||||||||||
Sbjct: 44144 aacaacgaagacaacaactc 44163

>gb|AC164162.2| Mus musculus BAC clone RP23-253E17 from chromosome 16, complete
             sequence
          Length = 174250

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    aaacacaagcttgcttcaag 64
             ||||||||||||||||||||
Sbjct: 14931 aaacacaagcttgcttcaag 14950

>gb|AY121406.1| Human echovirus 11 strain WA/2001-10038 capsid protein VP1 gene,
           partial cds
          Length = 876

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 ccatcaaattatgtacatcc 267
           ||||||||||||||||||||
Sbjct: 423 ccatcaaattatgtacatcc 442

>emb|BX933797.1| Gallus gallus finished cDNA, clone ChEST36l17
          Length = 1120

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 agcaatcacagcatcagccc 403
           ||||||||||||||||||||
Sbjct: 443 agcaatcacagcatcagccc 462

>gb|AY167105.1| Human echovirus 11 strain Kust/86 polyprotein gene, complete cds
          Length = 7385

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  ccatcaaattatgtacatcc 267
            ||||||||||||||||||||
Sbjct: 2854 ccatcaaattatgtacatcc 2873

>gb|AF191069.1|AF191069 Homo sapiens chromosome 21 clone P704-682K20 map 21q22.1, complete
            sequence
          Length = 108965

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 136  tcatcaaactatcaccaaat 155
            ||||||||||||||||||||
Sbjct: 1478 tcatcaaactatcaccaaat 1459

>gb|AF190641.1|AF190641 Homo sapiens chromosome 21 PAC 704P23131 map 21q22.1, complete sequence
          Length = 89102

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   tcatcaaactatcaccaaat 155
             ||||||||||||||||||||
Sbjct: 59996 tcatcaaactatcaccaaat 59977

>dbj|BS000177.1| Pan troglodytes chromosome 22 clone:PTB-118H03, map 22, complete
             sequences
          Length = 267172

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   tcatcaaactatcaccaaat 155
             ||||||||||||||||||||
Sbjct: 72480 tcatcaaactatcaccaaat 72461

>gb|AE003501.4| Drosophila melanogaster chromosome X, section 53 of 74 of the complete
              sequence
          Length = 323840

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 294    tttagcagaaggttggggtt 313
              ||||||||||||||||||||
Sbjct: 118982 tttagcagaaggttggggtt 119001

>dbj|AP001707.1| Homo sapiens genomic DNA, chromosome 21q, section 51/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   tcatcaaactatcaccaaat 155
             ||||||||||||||||||||
Sbjct: 28049 tcatcaaactatcaccaaat 28030

>emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chromosome 16, complete
           sequence
          Length = 229346

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  aaacacaagcttgcttcaag 64
           ||||||||||||||||||||
Sbjct: 664 aaacacaagcttgcttcaag 645

>dbj|AP000390.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:B347N6, complete sequence
          Length = 50188

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   tcatcaaactatcaccaaat 155
             ||||||||||||||||||||
Sbjct: 29629 tcatcaaactatcaccaaat 29610


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,539,880
Number of Sequences: 3902068
Number of extensions: 4539880
Number of successful extensions: 79777
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79705
Number of HSP's gapped (non-prelim): 72
length of query: 545
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 522
effective length of database: 17,143,297,704
effective search space: 8948801401488
effective search space used: 8948801401488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)