ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CB029_MOUSE (Q9CWN7) Protein C2orf29 homolog 33 0.70
2CB029_HUMAN (Q9UKZ1) Protein C2orf29 33 0.92
3P2RY2_RAT (P41232) P2Y purinoceptor 2 (P2Y2) (P2U purinoceptor 1... 32 1.6
4PHT19_ARATH (Q9S735) Inorganic phosphate transporter 1-9 (AtPht1... 32 2.0
5ESF1_YEAST (Q06344) Pre-rRNA processing protein ESF1 (18S rRNA f... 30 6.0
6IF5A4_LYCES (Q9AXQ3) Eukaryotic translation initiation factor 5A... 30 6.0
7IF2_VIBVY (Q7MI09) Translation initiation factor IF-2 30 6.0
8IF2_VIBVU (Q8DBW0) Translation initiation factor IF-2 30 6.0
9IF5A3_LYCES (Q9AXQ4) Eukaryotic translation initiation factor 5A... 30 7.8
10GRIPE_MOUSE (Q6GYP7) GTPase-activating RapGAP domain-like 1 (GAP... 30 7.8
11IF5A3_SOLTU (P56335) Eukaryotic translation initiation factor 5A... 30 7.8

>CB029_MOUSE (Q9CWN7) Protein C2orf29 homolog|
          Length = 505

 Score = 33.1 bits (74), Expect = 0.70
 Identities = 21/63 (33%), Positives = 34/63 (53%)
 Frame = -3

Query: 372 TVARSSQPARLSFPSDQTSRTTTIHRPNSTITITKPTGPNRPMQKQNTRPKF*RPLPWHH 193
           T +++S P+ LS P   +S +       S IT +  +GP  P++  + RP+F RP P  H
Sbjct: 229 TQSKASFPSILSDPDPDSSNSGFDSSVASRITESLVSGPKPPIES-HFRPEFIRPPPPLH 287

Query: 192 ACD 184
            C+
Sbjct: 288 ICE 290



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>CB029_HUMAN (Q9UKZ1) Protein C2orf29|
          Length = 510

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = -3

Query: 372 TVARSSQPARLSFPSDQTSRTTTIHRPNSTITITKPTGPNRPMQKQNTRPKF*RPLPWHH 193
           T +++S P+ LS P   +S +       S IT    +GP  P++  + RP+F RP P  H
Sbjct: 234 TQSKASFPSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIES-HFRPEFIRPPPPLH 292

Query: 192 ACD 184
            C+
Sbjct: 293 ICE 295



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>P2RY2_RAT (P41232) P2Y purinoceptor 2 (P2Y2) (P2U purinoceptor 1) (P2U1) (ATP|
           receptor) (Purinergic receptor)
          Length = 374

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 366 ARSSQPARLSFPSDQTSRTTTIHRPNSTITITK 268
           AR ++PA    PS Q  R   +HRPN T T+ K
Sbjct: 316 ARDAKPATEPTPSPQARRKLGLHRPNRTDTVRK 348



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>PHT19_ARATH (Q9S735) Inorganic phosphate transporter 1-9 (AtPht1;9) (H(+)/Pi|
           cotransporter)
          Length = 532

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 218 FRGHCHGIMLATAEFAMVARKPSFLWTSQH 129
           FR  CHGI  A  +F  +     FLW ++H
Sbjct: 436 FRSTCHGISGAAGKFGAIVGTVGFLWATRH 465



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>ESF1_YEAST (Q06344) Pre-rRNA processing protein ESF1 (18S rRNA factor 1)|
          Length = 628

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = -1

Query: 632 RQKQKSKSKLNKECLRDSETNMKQQMPRNRANKLKFVRRSHRTAKE 495
           R+K+K + K  K+ +++    +KQQ  +++ +KLK V + H   +E
Sbjct: 437 RRKEKERRKARKQKVKE----LKQQSEKDKKSKLKSVNKKHTNDEE 478



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>IF5A4_LYCES (Q9AXQ3) Eukaryotic translation initiation factor 5A-4 (eIF-5A-4)|
          Length = 160

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -1

Query: 482 EVDPAAYPTPATRALY*RRRGWRLTAGRKCKLLSKGTLLQGHHSQQGCPFLATRHRGRRQ 303
           + D  A  T   +A   R+ G+ +  GR CK++   T   G H    C F+A      ++
Sbjct: 11  KADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKK 70

Query: 302 FIDLI 288
             D++
Sbjct: 71  LEDIV 75



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>IF2_VIBVY (Q7MI09) Translation initiation factor IF-2|
          Length = 907

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 626 KQKSKSKLNKECLRDSETNMKQQMPRNRANKLKFVRRSHRTAKEVSGEE 480
           ++K+K     +  RD+E  +KQ+  R  A +LK  RR    AK  + EE
Sbjct: 168 EEKAKRDAEGKAKRDAEEKVKQEAARKEAEELK--RRQEEEAKRKAEEE 214



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>IF2_VIBVU (Q8DBW0) Translation initiation factor IF-2|
          Length = 907

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 626 KQKSKSKLNKECLRDSETNMKQQMPRNRANKLKFVRRSHRTAKEVSGEE 480
           ++K+K     +  RD+E  +KQ+  R  A +LK  RR    AK  + EE
Sbjct: 168 EEKAKRDAEGKAKRDAEEKVKQEAARKEAEELK--RRQEEEAKRKAEEE 214



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>IF5A3_LYCES (Q9AXQ4) Eukaryotic translation initiation factor 5A-3 (eIF-5A-3)|
          Length = 159

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 482 EVDPAAYPTPATRALY*RRRGWRLTAGRKCKLLSKGTLLQGHHSQQGCPFLA 327
           + D  A  T   +A   R+ G+ +  GR CK++   T   G H    C F+A
Sbjct: 11  KADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVA 62



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>GRIPE_MOUSE (Q6GYP7) GTPase-activating RapGAP domain-like 1|
            (GAP-related-interacting partner to E12) (GRIPE)
            (Tuberin-like protein 1)
          Length = 2035

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -2

Query: 286  NHNHHQTNWSEQADAKAEHQTQILEATAMASCLRLRSSPWLRGNLLSCGQVNTACHSTSX 107
            NH    T  S +       Q  +L  T + SC+++RS   + G  L+ G V+   +    
Sbjct: 1538 NHYSESTELSPELFESPNIQFFVLNNTTLVSCIQIRSEESMPGGGLAAGLVSANSNVRII 1597

Query: 106  LRD 98
            +RD
Sbjct: 1598 VRD 1600



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>IF5A3_SOLTU (P56335) Eukaryotic translation initiation factor 5A-3 (eIF-5A-3)|
           (eIF-4D)
          Length = 160

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 482 EVDPAAYPTPATRALY*RRRGWRLTAGRKCKLLSKGTLLQGHHSQQGCPFLA 327
           + D  A  T   +A   R+ G+ +  GR CK++   T   G H    C F+A
Sbjct: 11  KADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVA 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,734,767
Number of Sequences: 219361
Number of extensions: 1548973
Number of successful extensions: 4523
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4522
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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