ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 307 2e-80
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 307 2e-80
3emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb... 307 2e-80
4ref|NM_103058.2| Arabidopsis thaliana ATP binding / nucleoside-t... 76 2e-10
5gb|BT014906.1| Arabidopsis thaliana At1g33290 gene, complete cds 76 2e-10
6gb|BT015032.1| Arabidopsis thaliana At1g33290 mRNA, complete cds 76 2e-10
7gb|AC027035.5|AC027035 Arabidopsis thaliana chromosome 1 BAC T16... 76 2e-10
8emb|BX816642.1|CNS0ABLB Arabidopsis thaliana Full-length cDNA Co... 70 1e-08
9dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 50 0.009
10gb|CP000097.1| Synechococcus sp. CC9902, complete genome 48 0.037
11gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 48 0.037
12emb|AL138921.14| Human DNA sequence from clone RP11-316M21 on ch... 48 0.037
13gb|AC009961.11| Homo sapiens BAC clone RP11-357L2 from 2, comple... 44 0.58
14gb|AF099810.1|AF099810 Homo sapiens neurexin III-alpha gene, par... 44 0.58
15gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome 42 2.3
16ref|NM_105975.3| Arabidopsis thaliana ATP binding / ATP-dependen... 42 2.3
17gb|U41021.1| Caenorhabditis elegans cosmid F14D12, complete sequ... 42 2.3
18gb|BC079709.1| Xenopus laevis MGC81990 protein, mRNA (cDNA clone... 42 2.3
19gb|AC110742.4| Homo sapiens chromosome 11, clone CTD-2026G22, co... 42 2.3
20gb|AY065048.1| Arabidopsis thaliana At1g73170/T18K17_17 mRNA, co... 42 2.3
21gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 42 2.3
22gb|AC010556.6|AC010556 Arabidopsis thaliana chromosome 1 BAC T18... 42 2.3
23emb|BX813847.1|CNS0ADI8 Arabidopsis thaliana Full-length cDNA Co... 42 2.3
24emb|BX824498.1|CNS0A7EO Arabidopsis thaliana Full-length cDNA Co... 42 2.3
25gb|AC118942.4| Homo sapiens chromosome 11, clone RP11-15P23, com... 42 2.3
26dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 42 2.3
27gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N... 42 2.3
28dbj|AP001815.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 2.3
29ref|NM_188044.1| Oryza sativa (japonica cultivar-group), Ozsa846... 40 9.0
30gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complet... 40 9.0
31ref|XM_476929.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.0
32gb|AE006647.1| Sulfolobus solfataricus P2 section 6 of 272 of th... 40 9.0
33ref|XM_600114.2| PREDICTED: Bos taurus similar to soluble adenyl... 40 9.0
34gb|AC124179.4| Mus musculus chromosome 12 clone RP23-198B21, com... 40 9.0
35gb|AC129570.10| Mus musculus chromosome 14, clone RP23-343H21, c... 40 9.0
36gb|AC124694.3| Mus musculus BAC clone RP24-171H8 from chromosome... 40 9.0
37gb|AC130818.3| Mus musculus BAC clone RP23-89F9 from chromosome ... 40 9.0
38emb|Y08257.1|SS56KBFR S.solfataricus 56 kbp DNA fragment 40 9.0
39emb|BX323580.6| Zebrafish DNA sequence from clone DKEY-49J14 in ... 40 9.0
40gb|AY741371.1| Emiliania huxleyi strain CCMP 373 chloroplast, co... 40 9.0
41gb|AC011499.5| Homo sapiens chromosome 19 clone CTB-54O9, comple... 40 9.0
42gb|AC022068.6| Homo sapiens chromosome 8, clone RP11-523C15, com... 40 9.0
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
44dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
45gb|AF041852.1|AF041852 Chloranthus spicatus RPB140 (RPB2) mRNA, ... 40 9.0
46emb|BX004984.6| Zebrafish DNA sequence from clone DKEY-3N4, comp... 40 9.0
47gb|AC148214.3| Monodelphis domestica clone VMRC6-307F8, complete... 40 9.0
48gb|AC127465.3| Didelphis virginiana clone LB3-97M17, complete se... 40 9.0
49emb|BX004985.6| Mouse DNA sequence from clone RP23-320O16 on chr... 40 9.0
50gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 9.0
51emb|AL953891.10| Zebrafish DNA sequence from clone DKEY-28P22, c... 40 9.0
52dbj|AP006552.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 9.0
53dbj|AP006551.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 9.0
54gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 40 9.0
55gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 40 9.0 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  307 bits (155), Expect = 2e-80
 Identities = 221/243 (90%)
 Strand = Plus / Plus

                                                                           
Query: 419     accaagtcagataaaactggattctttataatgtttgcaagcctttctccgtgggcagta 478
               ||||| |||||||||  ||||||||||||||||||||| ||   ||||||||| || |||
Sbjct: 5685979 accaaatcagataaagttggattctttataatgtttgcgagatgttctccgtgagctgta 5686038

                                                                           
Query: 479     ccaataagcattacacccctttctgcaattgaccgacaagcttgcgcctctgattcagtt 538
               ||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| 
Sbjct: 5686039 ccaataagcatcacacccctttctgcaattgatcgacaagcttgcgcctctgcttcagta 5686098

                                                                           
Query: 539     ccaatctcgtctacaatgaccacctcaggcatatggttttcaactgcttcaatcatcacc 598
               || ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 5686099 cctatctcatctacaataaccacctcaggcatatggttttcgactgcttcaatcatcact 5686158

                                                                           
Query: 599     ctatgctgcattgatggttcaggtacttgcattcttcttgcgccaccaattgcagcatga 658
               ||||||||||||||||||| || |||||||||||||||||| |||||||| |||||||||
Sbjct: 5686159 ctatgctgcattgatggttgagctacttgcattcttcttgcaccaccaatcgcagcatga 5686218

                  
Query: 659     gga 661
               |||
Sbjct: 5686219 gga 5686221



 Score =  172 bits (87), Expect = 9e-40
 Identities = 129/143 (90%)
 Strand = Plus / Plus

                                                                           
Query: 277     ccgatgagtgacccaatagtgtcgctccctcatctcaataagaaaaggaaatgttggagg 336
               ||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 5685362 ccgatgagttacccagtagtgtcgctccctcatctcaataaggaaagggaatgttggagg 5685421

                                                                           
Query: 337     ggccttccgctccagtatacttttttgagtacgtcgtgcacgagcttcctcatcaccaag 396
               |||||||| |||||| |||||||| ||| | || || ||||| || || |||||||||||
Sbjct: 5685422 ggccttcctctccagaatacttttctgactgcggcgagcacgggcctcttcatcaccaag 5685481

                                      
Query: 397     agtgacagtttctactcctccaa 419
               |||||||||||||||||||||||
Sbjct: 5685482 agtgacagtttctactcctccaa 5685504



 Score =  125 bits (63), Expect = 2e-25
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                           
Query: 153     ttcagagtccatctccatcatacgttgcccatctttcaatgataacctgaaactcattat 212
               |||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||
Sbjct: 5684240 ttcagagtccatctccatcatacgttgcccatctttcaatgacaacctgaaacttgttat 5684299

                              
Query: 213     cccttttcctgacct 227
               |||||||||||||||
Sbjct: 5684300 cccttttcctgacct 5684314



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                     
Query: 224     acctcaacgagtggcttcttgccatgaagtagcatatcgacactcctctcagtc 277
               |||||||| ||||| |||||||||||||||| ||| || |||||||| ||||||
Sbjct: 5684641 acctcaacaagtggtttcttgccatgaagtaacatgtccacactcctttcagtc 5684694
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  307 bits (155), Expect = 2e-80
 Identities = 221/243 (90%)
 Strand = Plus / Plus

                                                                           
Query: 419     accaagtcagataaaactggattctttataatgtttgcaagcctttctccgtgggcagta 478
               ||||| |||||||||  ||||||||||||||||||||| ||   ||||||||| || |||
Sbjct: 5685972 accaaatcagataaagttggattctttataatgtttgcgagatgttctccgtgagctgta 5686031

                                                                           
Query: 479     ccaataagcattacacccctttctgcaattgaccgacaagcttgcgcctctgattcagtt 538
               ||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| 
Sbjct: 5686032 ccaataagcatcacacccctttctgcaattgatcgacaagcttgcgcctctgcttcagta 5686091

                                                                           
Query: 539     ccaatctcgtctacaatgaccacctcaggcatatggttttcaactgcttcaatcatcacc 598
               || ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 5686092 cctatctcatctacaataaccacctcaggcatatggttttcgactgcttcaatcatcact 5686151

                                                                           
Query: 599     ctatgctgcattgatggttcaggtacttgcattcttcttgcgccaccaattgcagcatga 658
               ||||||||||||||||||| || |||||||||||||||||| |||||||| |||||||||
Sbjct: 5686152 ctatgctgcattgatggttgagctacttgcattcttcttgcaccaccaatcgcagcatga 5686211

                  
Query: 659     gga 661
               |||
Sbjct: 5686212 gga 5686214



 Score =  172 bits (87), Expect = 9e-40
 Identities = 129/143 (90%)
 Strand = Plus / Plus

                                                                           
Query: 277     ccgatgagtgacccaatagtgtcgctccctcatctcaataagaaaaggaaatgttggagg 336
               ||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 5685355 ccgatgagttacccagtagtgtcgctccctcatctcaataaggaaagggaatgttggagg 5685414

                                                                           
Query: 337     ggccttccgctccagtatacttttttgagtacgtcgtgcacgagcttcctcatcaccaag 396
               |||||||| |||||| |||||||| ||| | || || ||||| || || |||||||||||
Sbjct: 5685415 ggccttcctctccagaatacttttctgactgcggcgagcacgggcctcttcatcaccaag 5685474

                                      
Query: 397     agtgacagtttctactcctccaa 419
               |||||||||||||||||||||||
Sbjct: 5685475 agtgacagtttctactcctccaa 5685497



 Score =  125 bits (63), Expect = 2e-25
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                           
Query: 153     ttcagagtccatctccatcatacgttgcccatctttcaatgataacctgaaactcattat 212
               |||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||
Sbjct: 5684233 ttcagagtccatctccatcatacgttgcccatctttcaatgacaacctgaaacttgttat 5684292

                              
Query: 213     cccttttcctgacct 227
               |||||||||||||||
Sbjct: 5684293 cccttttcctgacct 5684307



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                     
Query: 224     acctcaacgagtggcttcttgccatgaagtagcatatcgacactcctctcagtc 277
               |||||||| ||||| |||||||||||||||| ||| || |||||||| ||||||
Sbjct: 5684634 acctcaacaagtggtttcttgccatgaagtaacatgtccacactcctttcagtc 5684687
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>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 159056

 Score =  307 bits (155), Expect = 2e-80
 Identities = 221/243 (90%)
 Strand = Plus / Plus

                                                                         
Query: 419   accaagtcagataaaactggattctttataatgtttgcaagcctttctccgtgggcagta 478
             ||||| |||||||||  ||||||||||||||||||||| ||   ||||||||| || |||
Sbjct: 40502 accaaatcagataaagttggattctttataatgtttgcgagatgttctccgtgagctgta 40561

                                                                         
Query: 479   ccaataagcattacacccctttctgcaattgaccgacaagcttgcgcctctgattcagtt 538
             ||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| 
Sbjct: 40562 ccaataagcatcacacccctttctgcaattgatcgacaagcttgcgcctctgcttcagta 40621

                                                                         
Query: 539   ccaatctcgtctacaatgaccacctcaggcatatggttttcaactgcttcaatcatcacc 598
             || ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 40622 cctatctcatctacaataaccacctcaggcatatggttttcgactgcttcaatcatcact 40681

                                                                         
Query: 599   ctatgctgcattgatggttcaggtacttgcattcttcttgcgccaccaattgcagcatga 658
             ||||||||||||||||||| || |||||||||||||||||| |||||||| |||||||||
Sbjct: 40682 ctatgctgcattgatggttgagctacttgcattcttcttgcaccaccaatcgcagcatga 40741

                
Query: 659   gga 661
             |||
Sbjct: 40742 gga 40744



 Score =  172 bits (87), Expect = 9e-40
 Identities = 129/143 (90%)
 Strand = Plus / Plus

                                                                         
Query: 277   ccgatgagtgacccaatagtgtcgctccctcatctcaataagaaaaggaaatgttggagg 336
             ||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 39885 ccgatgagttacccagtagtgtcgctccctcatctcaataaggaaagggaatgttggagg 39944

                                                                         
Query: 337   ggccttccgctccagtatacttttttgagtacgtcgtgcacgagcttcctcatcaccaag 396
             |||||||| |||||| |||||||| ||| | || || ||||| || || |||||||||||
Sbjct: 39945 ggccttcctctccagaatacttttctgactgcggcgagcacgggcctcttcatcaccaag 40004

                                    
Query: 397   agtgacagtttctactcctccaa 419
             |||||||||||||||||||||||
Sbjct: 40005 agtgacagtttctactcctccaa 40027



 Score =  125 bits (63), Expect = 2e-25
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                         
Query: 153   ttcagagtccatctccatcatacgttgcccatctttcaatgataacctgaaactcattat 212
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||
Sbjct: 38763 ttcagagtccatctccatcatacgttgcccatctttcaatgacaacctgaaacttgttat 38822

                            
Query: 213   cccttttcctgacct 227
             |||||||||||||||
Sbjct: 38823 cccttttcctgacct 38837



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                   
Query: 224   acctcaacgagtggcttcttgccatgaagtagcatatcgacactcctctcagtc 277
             |||||||| ||||| |||||||||||||||| ||| || |||||||| ||||||
Sbjct: 39164 acctcaacaagtggtttcttgccatgaagtaacatgtccacactcctttcagtc 39217
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>ref|NM_103058.2| Arabidopsis thaliana ATP binding / nucleoside-triphosphatase/
           nucleotide binding AT1G33290 transcript variant
           AT1G33290.1 mRNA, complete cds
          Length = 1270

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 137/170 (80%)
 Strand = Plus / Minus

                                                                       
Query: 464 tctccgtgggcagtaccaataagcattacacccctttctgcaattgaccgacaagcttgc 523
           ||||| || ||||| ||||| ||||| || || ||||| ||||| || ||||||||  | 
Sbjct: 845 tctccatgagcagtgccaattagcatcactcctctttcagcaatggaacgacaagcaagt 786

                                                                       
Query: 524 gcctctgattcagttccaatctcgtctacaatgaccacctcaggcatatggttttcaact 583
           || || | ||| || |||||||| || || |||| ||| | ||||||||| || ||||||
Sbjct: 785 gcttcagcttctgtgccaatctcatcaacgatgatcacttgaggcatatgattctcaact 726

                                                             
Query: 584 gcttcaatcatcaccctatgctgcattgatggttcaggtacttgcattct 633
           || |||||||||||  |||||||||  ||||| | |||||||||||||||
Sbjct: 725 gcctcaatcatcactttatgctgcaaagatggcttaggtacttgcattct 676
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>gb|BT014906.1| Arabidopsis thaliana At1g33290 gene, complete cds
          Length = 1147

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 137/170 (80%)
 Strand = Plus / Minus

                                                                       
Query: 464 tctccgtgggcagtaccaataagcattacacccctttctgcaattgaccgacaagcttgc 523
           ||||| || ||||| ||||| ||||| || || ||||| ||||| || ||||||||  | 
Sbjct: 833 tctccatgagcagtgccaattagcatcactcctctttcagcaatggaacgacaagcaagt 774

                                                                       
Query: 524 gcctctgattcagttccaatctcgtctacaatgaccacctcaggcatatggttttcaact 583
           || || | ||| || |||||||| || || |||| ||| | ||||||||| || ||||||
Sbjct: 773 gcttcagcttctgtgccaatctcatcaacgatgatcacttgaggcatatgattctcaact 714

                                                             
Query: 584 gcttcaatcatcaccctatgctgcattgatggttcaggtacttgcattct 633
           || |||||||||||  |||||||||  ||||| | |||||||||||||||
Sbjct: 713 gcctcaatcatcactttatgctgcaaagatggcttaggtacttgcattct 664
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>gb|BT015032.1| Arabidopsis thaliana At1g33290 mRNA, complete cds
          Length = 1140

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 137/170 (80%)
 Strand = Plus / Minus

                                                                       
Query: 464 tctccgtgggcagtaccaataagcattacacccctttctgcaattgaccgacaagcttgc 523
           ||||| || ||||| ||||| ||||| || || ||||| ||||| || ||||||||  | 
Sbjct: 830 tctccatgagcagtgccaattagcatcactcctctttcagcaatggaacgacaagcaagt 771

                                                                       
Query: 524 gcctctgattcagttccaatctcgtctacaatgaccacctcaggcatatggttttcaact 583
           || || | ||| || |||||||| || || |||| ||| | ||||||||| || ||||||
Sbjct: 770 gcttcagcttctgtgccaatctcatcaacgatgatcacttgaggcatatgattctcaact 711

                                                             
Query: 584 gcttcaatcatcaccctatgctgcattgatggttcaggtacttgcattct 633
           || |||||||||||  |||||||||  ||||| | |||||||||||||||
Sbjct: 710 gcctcaatcatcactttatgctgcaaagatggcttaggtacttgcattct 661
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>gb|AC027035.5|AC027035 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete
             sequence
          Length = 81609

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 137/170 (80%)
 Strand = Plus / Minus

                                                                         
Query: 464   tctccgtgggcagtaccaataagcattacacccctttctgcaattgaccgacaagcttgc 523
             ||||| || ||||| ||||| ||||| || || ||||| ||||| || ||||||||  | 
Sbjct: 51918 tctccatgagcagtgccaattagcatcactcctctttcagcaatggaacgacaagcaagt 51859

                                                                         
Query: 524   gcctctgattcagttccaatctcgtctacaatgaccacctcaggcatatggttttcaact 583
             || || | ||| || |||||||| || || |||| ||| | ||||||||| || ||||||
Sbjct: 51858 gcttcagcttctgtgccaatctcatcaacgatgatcacttgaggcatatgattctcaact 51799

                                                               
Query: 584   gcttcaatcatcaccctatgctgcattgatggttcaggtacttgcattct 633
             || |||||||||||  |||||||||  ||||| | |||||||||||||||
Sbjct: 51798 gcctcaatcatcactttatgctgcaaagatggcttaggtacttgcattct 51749
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>emb|BX816642.1|CNS0ABLB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH5ZG08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1223

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                       
Query: 539 ccaatctcgtctacaatgaccacctcaggcatatggttttcaactgcttcaatcatcacc 598
           |||||||| || || |||| ||| | ||||||||| || |||||||| ||||||||||| 
Sbjct: 758 ccaatctcatcaacgatgatcacttgaggcatatgattctcaactgcctcaatcatcact 699

                                              
Query: 599 ctatgctgcattgatggttcaggtacttgcattct 633
            |||||||||  ||||| | |||||||||||||||
Sbjct: 698 ttatgctgcaaagatggcttaggtacttgcattct 664
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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 566    ggcatatggttttcaactgcttcaatcatcacc 598
              |||||||||||||| ||||| ||||||||||||
Sbjct: 442795 ggcatatggttttccactgcctcaatcatcacc 442763
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>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                               
Query: 560     acctcaggcatatggttttcaactgcttcaatcatcaccctatgctgc 607
               ||||||||||| |||||||| ||||| || |||||||||  |||||||
Sbjct: 1867042 acctcaggcatgtggttttccactgcctcgatcatcacctgatgctgc 1867089
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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                               
Query: 560     acctcaggcatatggttttcaactgcttcaatcatcaccctatgctgc 607
               ||||| |||||||| ||||| || ||||||||||| |||| |||||||
Sbjct: 3362554 acctccggcatatgattttccaccgcttcaatcatgaccccatgctgc 3362601
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>emb|AL138921.14| Human DNA sequence from clone RP11-316M21 on chromosome 10 Contains the
             3' end of gene FLJ30135, the CHUK gene for conserved
             helix-loop ubiquitous kinase, a novel gene (FLJ32012), a
             novel gene containing FLJ10998, FLJ40576, FLJ3922,
             FLJ30751, a prohibitin (PHB) pseudogene, a tropomyosin
             (TPM4) pseudogene and three CpG islands, complete sequence
          Length = 194916

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 205   ctcattatcccttttcctgacctc 228
             ||||||||||||||||||||||||
Sbjct: 61241 ctcattatcccttttcctgacctc 61264
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>gb|AC009961.11| Homo sapiens BAC clone RP11-357L2 from 2, complete sequence
          Length = 216571

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 422    aagtcagataaaactggattct 443
              ||||||||||||||||||||||
Sbjct: 164923 aagtcagataaaactggattct 164902
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>gb|AF099810.1|AF099810 Homo sapiens neurexin III-alpha gene, partial cds
          Length = 193824

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 423   agtcagataaaactggattctt 444
             ||||||||||||||||||||||
Sbjct: 70879 agtcagataaaactggattctt 70858
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>gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome
          Length = 1469720

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 566    ggcatatggttttcaactgcttcaatcat 594
              |||||||||||||||||||| || |||||
Sbjct: 715179 ggcatatggttttcaactgcctctatcat 715151
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>ref|NM_105975.3| Arabidopsis thaliana ATP binding / ATP-dependent peptidase/
           nucleoside-triphosphatase/ nucleotide binding /
           serine-type endopeptidase AT1G73170 mRNA, complete cds
          Length = 2067

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 566 ggcatatggttttcaactgcttcaatcatcacc 598
           |||||||||||||| ||||| ||||||| ||||
Sbjct: 841 ggcatatggttttctactgcctcaatcagcacc 809
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>gb|U41021.1| Caenorhabditis elegans cosmid F14D12, complete sequence
          Length = 40901

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 97    gcaagtaggaagaaaatgaag 117
             |||||||||||||||||||||
Sbjct: 32651 gcaagtaggaagaaaatgaag 32631
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>gb|BC079709.1| Xenopus laevis MGC81990 protein, mRNA (cDNA clone MGC:81990
           IMAGE:7010465), complete cds
          Length = 2243

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 107 agaaaatgaagcatggcaggagaaa 131
           ||||||||||||||||| |||||||
Sbjct: 937 agaaaatgaagcatggccggagaaa 913
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>gb|AC110742.4| Homo sapiens chromosome 11, clone CTD-2026G22, complete sequence
          Length = 129095

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 317  agaaaaggaaatgttggaggg 337
            |||||||||||||||||||||
Sbjct: 2541 agaaaaggaaatgttggaggg 2521
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>gb|AY065048.1| Arabidopsis thaliana At1g73170/T18K17_17 mRNA, complete cds
          Length = 2067

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 566 ggcatatggttttcaactgcttcaatcatcacc 598
           |||||||||||||| ||||| ||||||| ||||
Sbjct: 841 ggcatatggttttctactgcctcaatcagcacc 809
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 120    tggcaggagaaataacaactt 140
              |||||||||||||||||||||
Sbjct: 778600 tggcaggagaaataacaactt 778580
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>gb|AC010556.6|AC010556 Arabidopsis thaliana chromosome 1 BAC T18K17 genomic sequence, complete
             sequence
          Length = 70836

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 566   ggcatatggttttcaactgcttcaatcatcacc 598
             |||||||||||||| ||||| ||||||| ||||
Sbjct: 54011 ggcatatggttttctactgcctcaatcagcacc 53979
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>emb|BX813847.1|CNS0ADI8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB42ZE01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1989

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 566 ggcatatggttttcaactgcttcaatcatcacc 598
           |||||||||||||| ||||| ||||||| ||||
Sbjct: 826 ggcatatggttttctactgcctcaatcagcacc 794
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>emb|BX824498.1|CNS0A7EO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH52ZD02 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1917

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 563  tcaggcatatggttttcaact 583
            |||||||||||||||||||||
Sbjct: 1914 tcaggcatatggttttcaact 1894
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>gb|AC118942.4| Homo sapiens chromosome 11, clone RP11-15P23, complete sequence
          Length = 161527

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 317    agaaaaggaaatgttggaggg 337
              |||||||||||||||||||||
Sbjct: 130176 agaaaaggaaatgttggaggg 130156
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 566     ggcatatggttttcaactgcttcaatcatcacc 598
               |||||||| ||||| ||||| ||||||||||||
Sbjct: 2782644 ggcatatgattttccactgcctcaatcatcacc 2782612
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>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete
              sequence
          Length = 116944

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 566    ggcatatggttttcaactgcttcaatcatcacc 598
              |||||||||||||| ||||| ||||||| ||||
Sbjct: 116268 ggcatatggttttctactgcctcaatcagcacc 116300
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>dbj|AP001815.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-97D10, complete
             sequence
          Length = 167653

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 317   agaaaaggaaatgttggaggg 337
             |||||||||||||||||||||
Sbjct: 83793 agaaaaggaaatgttggaggg 83773
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>ref|NM_188044.1| Oryza sativa (japonica cultivar-group), Ozsa8464 predicted mRNA
          Length = 3036

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  aattcagagtccatctccat 170
            ||||||||||||||||||||
Sbjct: 3026 aattcagagtccatctccat 3007
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>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 487    cattacacccctttctgcaa 506
              ||||||||||||||||||||
Sbjct: 995003 cattacacccctttctgcaa 994984
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>ref|XM_476929.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2124

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 566 ggcatatggttttcaactgcttcaatcatcaccctatgctgcat 609
           ||||| || |||||||| ||||||||||| ||  ||||||||||
Sbjct: 860 ggcatgtgattttcaacagcttcaatcattacgttatgctgcat 817
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>gb|AE006647.1| Sulfolobus solfataricus P2 section 6 of 272 of the complete genome
          Length = 11684

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 589  aatcatcaccctatgctgca 608
            ||||||||||||||||||||
Sbjct: 9092 aatcatcaccctatgctgca 9073
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>ref|XM_600114.2| PREDICTED: Bos taurus similar to soluble adenylyl cyclase
            (LOC521844), partial mRNA
          Length = 2647

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 440  ttctttataatgtttgcaag 459
            ||||||||||||||||||||
Sbjct: 1755 ttctttataatgtttgcaag 1736
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>gb|AC124179.4| Mus musculus chromosome 12 clone RP23-198B21, complete sequence
          Length = 192472

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 97    gcaagtaggaagaaaatgaagcat 120
             |||||| |||||||||||||||||
Sbjct: 55674 gcaagtgggaagaaaatgaagcat 55651
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>gb|AC129570.10| Mus musculus chromosome 14, clone RP23-343H21, complete sequence
          Length = 198703

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 432    aaactggattctttataatg 451
              ||||||||||||||||||||
Sbjct: 156749 aaactggattctttataatg 156768
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>gb|AC124694.3| Mus musculus BAC clone RP24-171H8 from chromosome 14, complete
            sequence
          Length = 154741

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  aaactggattctttataatg 451
            ||||||||||||||||||||
Sbjct: 6664 aaactggattctttataatg 6683
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>gb|AC130818.3| Mus musculus BAC clone RP23-89F9 from chromosome 8, complete sequence
          Length = 220285

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 285    tgacccaatagtgtcgctccctca 308
              ||||||||||| ||||||||||||
Sbjct: 106933 tgacccaatagggtcgctccctca 106956
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>emb|Y08257.1|SS56KBFR S.solfataricus 56 kbp DNA fragment
          Length = 56105

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 589   aatcatcaccctatgctgca 608
             ||||||||||||||||||||
Sbjct: 42031 aatcatcaccctatgctgca 42050
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>emb|BX323580.6| Zebrafish DNA sequence from clone DKEY-49J14 in linkage group 6,
           complete sequence
          Length = 98167

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 525 cctctgattcagttccaatc 544
           ||||||||||||||||||||
Sbjct: 560 cctctgattcagttccaatc 541
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>gb|AY741371.1| Emiliania huxleyi strain CCMP 373 chloroplast, complete genome
          Length = 105309

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 563   tcaggcatatggttttcaactgcttcaatcat 594
             |||||||||||||| || || |||||||||||
Sbjct: 31876 tcaggcatatggttctccaccgcttcaatcat 31845
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>gb|AC011499.5| Homo sapiens chromosome 19 clone CTB-54O9, complete sequence
          Length = 199776

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 576    tttcaactgcttcaatcatc 595
              ||||||||||||||||||||
Sbjct: 137048 tttcaactgcttcaatcatc 137029
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>gb|AC022068.6| Homo sapiens chromosome 8, clone RP11-523C15, complete sequence
          Length = 202043

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   agaaaaggaaatgttggagg 336
             ||||||||||||||||||||
Sbjct: 91235 agaaaaggaaatgttggagg 91254
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     aattcagagtccatctccat 170
               ||||||||||||||||||||
Sbjct: 9317026 aattcagagtccatctccat 9317007
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>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0667A10
          Length = 152237

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   aattcagagtccatctccat 170
             ||||||||||||||||||||
Sbjct: 93620 aattcagagtccatctccat 93601
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>gb|AF041852.1|AF041852 Chloranthus spicatus RPB140 (RPB2) mRNA, partial cds
          Length = 1599

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 208 attatcccttttcctgacctcaac 231
           ||||||||||||||||||| ||||
Sbjct: 556 attatcccttttcctgaccacaac 579
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>emb|BX004984.6| Zebrafish DNA sequence from clone DKEY-3N4, complete sequence
          Length = 264738

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 525   cctctgattcagttccaatc 544
             ||||||||||||||||||||
Sbjct: 70214 cctctgattcagttccaatc 70233
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>gb|AC148214.3| Monodelphis domestica clone VMRC6-307F8, complete sequence
          Length = 163118

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   atctcaataagaaaaggaaa 327
             ||||||||||||||||||||
Sbjct: 86663 atctcaataagaaaaggaaa 86682
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>gb|AC127465.3| Didelphis virginiana clone LB3-97M17, complete sequence
          Length = 165669

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    atctcaataagaaaaggaaa 327
              ||||||||||||||||||||
Sbjct: 157051 atctcaataagaaaaggaaa 157070
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>emb|BX004985.6| Mouse DNA sequence from clone RP23-320O16 on chromosome 2, complete
             sequence
          Length = 208765

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   atctcaataagaaaaggaaa 327
             ||||||||||||||||||||
Sbjct: 81300 atctcaataagaaaaggaaa 81319
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 450     tgtttgcaagcctttctccg 469
               ||||||||||||||||||||
Sbjct: 1252780 tgtttgcaagcctttctccg 1252799
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>emb|AL953891.10| Zebrafish DNA sequence from clone DKEY-28P22, complete sequence
          Length = 242282

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 525  cctctgattcagttccaatc 544
            ||||||||||||||||||||
Sbjct: 1428 cctctgattcagttccaatc 1447
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>dbj|AP006552.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT28G12, TM0107,
             complete sequence
          Length = 97172

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   gagaaataacaacttgaaat 145
             ||||||||||||||||||||
Sbjct: 61462 gagaaataacaacttgaaat 61443
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>dbj|AP006551.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT35D17, TM0104,
             complete sequence
          Length = 96208

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   gagaaataacaacttgaaat 145
             ||||||||||||||||||||
Sbjct: 81566 gagaaataacaacttgaaat 81547
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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    atctcaataagaaaaggaaa 327
              ||||||||||||||||||||
Sbjct: 294925 atctcaataagaaaaggaaa 294944
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    atctcaataagaaaaggaaa 327
              ||||||||||||||||||||
Sbjct: 329506 atctcaataagaaaaggaaa 329525


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,262,350
Number of Sequences: 3902068
Number of extensions: 6262350
Number of successful extensions: 111142
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110761
Number of HSP's gapped (non-prelim): 381
length of query: 661
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 638
effective length of database: 17,143,297,704
effective search space: 10937423935152
effective search space used: 10937423935152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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