ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15o09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TPP1_SCHPO (P78875) Trehalose-phosphatase (EC 3.1.3.12) (Trehalo... 67 5e-11
2TPS2_YEAST (P31688) Trehalose-phosphatase (EC 3.1.3.12) (Trehalo... 57 5e-08
3SYC_METCA (Q60BG8) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst... 35 0.21
4OTSB_SALTY (Q9L894) Trehalose-phosphatase (EC 3.1.3.12) (Trehalo... 35 0.21
5TPP_ENCCU (Q8SSL0) Probable trehalose-phosphatase (EC 3.1.3.12) ... 33 0.60
6PYRG_MYCCT (Q48965) CTP synthase (EC 6.3.4.2) (UTP--ammonia liga... 33 1.0
7OTSB_ECOLI (P31678) Trehalose-phosphatase (EC 3.1.3.12) (Trehalo... 32 1.3
8FA21C_HUMAN (Q9Y4E1) Protein FAM21C 31 3.0
9CAPP_THET8 (Q5SKL7) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 30 6.7
10CAPP_THET2 (Q72L05) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 30 6.7
11FA21C_PONPY (Q5RDC1) Protein FAM21C 30 6.7

>TPP1_SCHPO (P78875) Trehalose-phosphatase (EC 3.1.3.12) (Trehalose 6-phosphate|
            phosphatase) (TPP)
          Length = 817

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
 Frame = -3

Query: 659  DPDFGSCQAKELHEHXES-VLSNEPVSVKADVNHVEVKPQGVSKGLVAKRMLSAMQARGL 483
            DP+ G+ QA E     E  V S   V +     ++EV+P  ++KG + K++LS+     L
Sbjct: 691  DPENGAFQALECEALLEELVCSKYDVEIMRGKANLEVRPSSINKGGIVKQILSSYPEDSL 750

Query: 482  LPDFILCIGDDRSDEDMFEVITTAVDGPYLNPEAKVFACTVG--RKPSKAKYYLDDTADI 309
             P FI C GDDR+DEDMF  +        +N E   FA T+G  +K S A + + D A++
Sbjct: 751  -PSFIFCAGDDRTDEDMFRSLH---KNTRINKETS-FAVTIGSDKKLSIADWCIADPANV 805

Query: 308  VRLIQALANVSD 273
            + ++  LAN ++
Sbjct: 806  IDILADLANFTN 817



to top

>TPS2_YEAST (P31688) Trehalose-phosphatase (EC 3.1.3.12) (Trehalose 6-phosphate|
           phosphatase) (TPP) (Trehalose synthase complex catalytic
           subunit TPS2)
          Length = 896

 Score = 57.0 bits (136), Expect = 5e-08
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
 Frame = -3

Query: 656 PDFGSCQAKELHEHXESVLSNEPVSVKADVNHVEVKPQGVSKGLVAKRM----------- 510
           P+ G   AKEL E   S   +  + V     ++EV+P+ V+KG + KR+           
Sbjct: 700 PELGEFHAKELKEKLLSFTDDFDLEVMDGKANIEVRPRFVNKGEIVKRLVWHQHGKPQDM 759

Query: 509 ---LSAMQARGLLPDFILCIGDDRSDEDMFEVITT 414
              +S    +  +PDF+LC+GDD +DEDMF  + T
Sbjct: 760 LKGISEKLPKDEMPDFVLCLGDDFTDEDMFRQLNT 794



to top

>SYC_METCA (Q60BG8) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 465

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
 Frame = -3

Query: 491 RGLLPDFILCIGDDRSDEDMFEVITTAVDGPYLNPEAKVFACTVGRKPSKAKYYLD-DTA 315
           RGL PD  L +G+DR DE        A+   +  PEA      + R+ ++ K       A
Sbjct: 324 RGLAPDLPLPLGEDR-DEGFSSRFADAMQDDFNTPEAIAVLFDLAREINRHKAAEPAKAA 382

Query: 314 DIVRLIQALANVSDEVQGGPPSYFFACAGTS 222
            +   +++L NV   +Q  P +YF + AG S
Sbjct: 383 ALGATLKSLGNVLGLLQTDPEAYFKSDAGGS 413



to top

>OTSB_SALTY (Q9L894) Trehalose-phosphatase (EC 3.1.3.12) (Trehalose 6-phosphate|
           phosphatase) (TPP)
          Length = 267

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 26/99 (26%), Positives = 43/99 (43%)
 Frame = -3

Query: 560 VEVKPQGVSKGLVAKRMLSAMQARGLLPDFILCIGDDRSDEDMFEVITTAVDGPYLNPEA 381
           VE+KP+G +KG      +      G +P F   +GDD +DE  F V+            A
Sbjct: 166 VEIKPKGTNKGEAIAAFMQEAPFAGRIPVF---VGDDLTDEAGFGVVN----------HA 212

Query: 380 KVFACTVGRKPSKAKYYLDDTADIVRLIQALANVSDEVQ 264
              +  VG   ++A + L+   D+ R ++ +     E Q
Sbjct: 213 GGISVKVGVGATQAAWRLESVPDVWRWLEQINYPQQEQQ 251



to top

>TPP_ENCCU (Q8SSL0) Probable trehalose-phosphatase (EC 3.1.3.12) (Trehalose|
           6-phosphate phosphatase) (TPP)
          Length = 718

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -3

Query: 473 FILCIGDDRSDEDMFEVITTAVDGPYLNPEAKVFACTVGRKPSKAKYYLDDTADIVRLIQ 294
           F+LC GDD +DEDMF+V              K +   VG + + A Y + D  +   L+ 
Sbjct: 668 FVLCAGDDVADEDMFDV-------------CKGYTIKVGDQSTSAAYRVKDPENFRMLLG 714

Query: 293 AL 288
            L
Sbjct: 715 RL 716



to top

>PYRG_MYCCT (Q48965) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 532

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -3

Query: 509 LSAMQARGLLPDFILCIGDDRSDEDMFEVITTAVDGPYLNPEAKVFACTVGRKP-SKAKY 333
           + AM + G+ PD I+C  D  S +D+ E I+   + P  N    +   ++ R P + AK 
Sbjct: 196 VKAMASLGIQPDVIVCRSDSSSPKDIKEKISLFCNVPITNIIDAIDQDSIYRVPLALAKQ 255

Query: 332 YLDDTADIVRLIQALANVSD 273
            L D   I+  +Q  AN  D
Sbjct: 256 NLQDI--IIEQLQLKANAID 273



to top

>OTSB_ECOLI (P31678) Trehalose-phosphatase (EC 3.1.3.12) (Trehalose 6-phosphate|
           phosphatase) (TPP)
          Length = 266

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 560 VEVKPQGVSKGLVAKRMLSAMQARGLLPDFILCIGDDRSDEDMFEVI 420
           VE+KP+G SKG      +      G  P F   +GDD +DE  F V+
Sbjct: 166 VEIKPRGTSKGEAIAAFMQEAPFIGRTPVF---LGDDLTDESGFAVV 209



to top

>FA21C_HUMAN (Q9Y4E1) Protein FAM21C|
          Length = 1320

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 16/145 (11%)
 Frame = -3

Query: 557  EVKPQGVSKGLVAKRMLSAMQARGLLPDFILCIGDDRSDEDMFEVITTAVDGPYLNPEAK 378
            E +   V +G +A+    A+   G  P      G+D ++E +         GP    +  
Sbjct: 1034 EAEDMSVPRGPIAQWADGAISPNGHRPQLRAASGEDSTEEALAAAAAPWEGGPVPGVDTS 1093

Query: 377  VFACTVGRKPSKAKYYLDDTADI---------VRLIQALANVSDE-----VQGGPPSYFF 240
             FA ++G    +A  +  D+ DI         V   +  A +++      V G   S  F
Sbjct: 1094 PFAKSLGHSRGEADLF--DSGDIFSTGTGSQSVERTKPKAKIAENPANPPVGGKAKSPMF 1151

Query: 239  ACAG--TSTDDRALN*GGKPAKKTS 171
               G  +S DD   +   KPAKKT+
Sbjct: 1152 PALGEASSDDDLFQSAKPKPAKKTN 1176



to top

>CAPP_THET8 (Q5SKL7) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 858

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = -3

Query: 296 QALANVSDEVQGGPPSYFFACAGTSTDDRALN*GGKPAKKTSTSTAPA*IRPRFR 132
           +AL+ V +EV  G P YFF   GTST       GG PA +   S  P  +  R R
Sbjct: 547 EALSRVGEEV--GLPVYFFHGRGTSTAR-----GGGPAGRAIASLPPRSVGRRIR 594



to top

>CAPP_THET2 (Q72L05) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 858

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = -3

Query: 296 QALANVSDEVQGGPPSYFFACAGTSTDDRALN*GGKPAKKTSTSTAPA*IRPRFR 132
           +AL+ V +EV  G P YFF   GTST       GG PA +   S  P  +  R R
Sbjct: 547 EALSRVGEEV--GLPVYFFHGRGTSTAR-----GGGPAGRAIASLPPRSVGRRIR 594



to top

>FA21C_PONPY (Q5RDC1) Protein FAM21C|
          Length = 1340

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 18/147 (12%)
 Frame = -3

Query: 557  EVKPQGVSKGLVAKRMLSAMQARGLLPDFILCIGDDRSDEDMFEVITTAVDGPYLNPEAK 378
            E +   V +G +A+     +   G  P      G+D ++E +         GP    +  
Sbjct: 1054 EAEDMSVPRGPIAQWADGTISPNGHRPQLRAASGEDSTEEALAAAAAPWEGGPVPGVDRS 1113

Query: 377  VFACTVGRKPSKAKYYLDDTADI----------------VRLIQALANVSDEVQGGPPSY 246
             FA ++G    +A  +  D+ DI                 ++ + LAN    V G   S 
Sbjct: 1114 PFAKSLGHSRGEADLF--DSGDIFSTGTGSQSEERTKPKAKIAENLAN--PPVGGKAKSP 1169

Query: 245  FFACAG--TSTDDRALN*GGKPAKKTS 171
             F   G  +S DD   +   KPAKKT+
Sbjct: 1170 MFPALGEASSDDDLFQSAKPKPAKKTN 1196


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,331,064
Number of Sequences: 219361
Number of extensions: 1461967
Number of successful extensions: 4365
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4361
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top