ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15n07 |
|---|---|
| Clone Library Name | barley_pub |
>TM9S2_MOUSE (P58021) Transmembrane 9 superfamily protein member 2 precursor| Length = 662 Score = 97.1 bits (240), Expect = 4e-20 Identities = 46/126 (36%), Positives = 64/126 (50%) Frame = -1 Query: 651 LFFILSSIWLGRFYYXXXXXXXXXXXXXXVCGEVSLVLTYMHLCVEDWKWWWKXXXXXXX 472 LFFIL+SIW + YY C E +++L Y HLC ED+ W W+ Sbjct: 538 LFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGF 597 Query: 471 XXXXXFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGFLLSFYFVHYLF 292 +Y+I+Y F ++G S LY GY++IM L TG IGF F+FV ++ Sbjct: 598 TAVYFLIYAIHYF-FSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIY 656 Query: 291 SSVKID 274 S VK+D Sbjct: 657 SVVKVD 662
>TM9S2_RAT (Q66HG5) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 96.7 bits (239), Expect = 5e-20 Identities = 46/126 (36%), Positives = 64/126 (50%) Frame = -1 Query: 651 LFFILSSIWLGRFYYXXXXXXXXXXXXXXVCGEVSLVLTYMHLCVEDWKWWWKXXXXXXX 472 LFFIL+SIW + YY C E +++L Y HLC ED+ W W+ Sbjct: 539 LFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGF 598 Query: 471 XXXXXFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGFLLSFYFVHYLF 292 +Y+I+Y F ++G S LY GY++IM L TG IGF F+FV ++ Sbjct: 599 TAVYFLVYAIHYF-FSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIY 657 Query: 291 SSVKID 274 S VK+D Sbjct: 658 SVVKVD 663
>TM9S2_PONPY (Q5R8Y6) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 96.7 bits (239), Expect = 5e-20 Identities = 45/126 (35%), Positives = 64/126 (50%) Frame = -1 Query: 651 LFFILSSIWLGRFYYXXXXXXXXXXXXXXVCGEVSLVLTYMHLCVEDWKWWWKXXXXXXX 472 LFFIL+SIW + YY C E +++L Y HLC ED+ W W+ Sbjct: 539 LFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGF 598 Query: 471 XXXXXFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGFLLSFYFVHYLF 292 +Y+++Y F ++G S LY GY++IM L TG IGF F+FV ++ Sbjct: 599 TAVYFLIYAVHYF-FSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIY 657 Query: 291 SSVKID 274 S VK+D Sbjct: 658 SVVKVD 663
>TM9S2_HUMAN (Q99805) Transmembrane 9 superfamily protein member 2 precursor| (p76) Length = 663 Score = 96.7 bits (239), Expect = 5e-20 Identities = 45/126 (35%), Positives = 64/126 (50%) Frame = -1 Query: 651 LFFILSSIWLGRFYYXXXXXXXXXXXXXXVCGEVSLVLTYMHLCVEDWKWWWKXXXXXXX 472 LFFIL+SIW + YY C E +++L Y HLC ED+ W W+ Sbjct: 539 LFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGF 598 Query: 471 XXXXXFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGFLLSFYFVHYLF 292 +Y+++Y F ++G S LY GY++IM L TG IGF F+FV ++ Sbjct: 599 TAVYFLIYAVHYF-FSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIY 657 Query: 291 SSVKID 274 S VK+D Sbjct: 658 SVVKVD 663
>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4| Length = 625 Score = 93.2 bits (230), Expect = 6e-19 Identities = 43/126 (34%), Positives = 66/126 (52%) Frame = -1 Query: 651 LFFILSSIWLGRFYYXXXXXXXXXXXXXXVCGEVSLVLTYMHLCVEDWKWWWKXXXXXXX 472 LFFI S+IW +FYY C ++S+V+ Y LC ED++WWW+ Sbjct: 501 LFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGG 560 Query: 471 XXXXXFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGFLLSFYFVHYLF 292 +Y+I Y V L + + + LY GY+ +M + L TG IGF ++ FV ++ Sbjct: 561 SAFYVLVYAIFYFVNKL-DIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIY 619 Query: 291 SSVKID 274 ++VKID Sbjct: 620 AAVKID 625
>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane| protein) (Pheromone alpha-factor transporter) (Acidic 24 kDa late endocytic intermediate component) Length = 667 Score = 79.3 bits (194), Expect = 9e-15 Identities = 38/126 (30%), Positives = 64/126 (50%) Frame = -1 Query: 651 LFFILSSIWLGRFYYXXXXXXXXXXXXXXVCGEVSLVLTYMHLCVEDWKWWWKXXXXXXX 472 L+FI +S+W + +Y V++++TY LC+E+WKW W+ Sbjct: 544 LYFIYTSLWFNKIFYMFGFLFFSFLLLTLTSSLVTILITYHSLCLENWKWQWRGFIIGGA 603 Query: 471 XXXXXFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGFLLSFYFVHYLF 292 I+ ++F L G + LY+GYS +++ L TG+IGF+ S FV ++ Sbjct: 604 GCALYVF--IHSILFTKFKLGGFTTIVLYVGYSSVISLLCCLVTGSIGFISSMLFVRKIY 661 Query: 291 SSVKID 274 SS+K+D Sbjct: 662 SSIKVD 667
>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 71.6 bits (174), Expect = 2e-12 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 1/127 (0%) Frame = -1 Query: 651 LFFILSSIWLGRFYYXXXXXXXXXXXXXXVCGE-VSLVLTYMHLCVEDWKWWWKXXXXXX 475 L++I +++W GR Y G +S+ LTY L ED++WWW+ Sbjct: 482 LYYIFATVW-GREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVG 540 Query: 474 XXXXXXFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGFLLSFYFVHYL 295 FLYS+ Y ++SG V + GYSL+ + L G I F S F+ Y+ Sbjct: 541 STGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYI 599 Query: 294 FSSVKID 274 + ++K+D Sbjct: 600 YVNLKMD 606
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 71.6 bits (174), Expect = 2e-12 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 1/127 (0%) Frame = -1 Query: 651 LFFILSSIWLGRFYYXXXXXXXXXXXXXXVCGE-VSLVLTYMHLCVEDWKWWWKXXXXXX 475 L++I +++W GR Y G +S+ LTY L ED++WWW+ Sbjct: 482 LYYIFATVW-GREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVG 540 Query: 474 XXXXXXFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGFLLSFYFVHYL 295 FLYS+ Y ++SG V + GYSL+ + L G I F S F+ Y+ Sbjct: 541 STGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYI 599 Query: 294 FSSVKID 274 + ++K+D Sbjct: 600 YVNLKMD 606
>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor| (hMP70) Length = 606 Score = 71.6 bits (174), Expect = 2e-12 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 1/127 (0%) Frame = -1 Query: 651 LFFILSSIWLGRFYYXXXXXXXXXXXXXXVCGE-VSLVLTYMHLCVEDWKWWWKXXXXXX 475 L++I +++W GR Y G +S+ LTY L ED++WWW+ Sbjct: 482 LYYIFATVW-GREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVG 540 Query: 474 XXXXXXFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGFLLSFYFVHYL 295 FLYS+ Y ++SG V + GYSL+ + L G I F S F+ Y+ Sbjct: 541 STGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYI 599 Query: 294 FSSVKID 274 + ++K+D Sbjct: 600 YVNLKMD 606
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 71.6 bits (174), Expect = 2e-12 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 1/127 (0%) Frame = -1 Query: 651 LFFILSSIWLGRFYYXXXXXXXXXXXXXXVCGE-VSLVLTYMHLCVEDWKWWWKXXXXXX 475 L++I +++W GR Y G +S+ LTY L ED++WWW+ Sbjct: 465 LYYIFATVW-GREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVG 523 Query: 474 XXXXXXFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGFLLSFYFVHYL 295 FLYS+ Y ++SG V + GYSL+ + L G I F S F+ Y+ Sbjct: 524 STGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYI 582 Query: 294 FSSVKID 274 + ++K+D Sbjct: 583 YVNLKMD 589
>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor| Length = 587 Score = 64.3 bits (155), Expect = 3e-10 Identities = 35/126 (27%), Positives = 59/126 (46%) Frame = -1 Query: 651 LFFILSSIWLGRFYYXXXXXXXXXXXXXXVCGEVSLVLTYMHLCVEDWKWWWKXXXXXXX 472 ++FI +S W + YY V V++V TY L ED++W W Sbjct: 463 MYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAAS 522 Query: 471 XXXXXFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGFLLSFYFVHYLF 292 ++YS Y F + + G + Y GY + + A+ + GAIG++ + FV ++ Sbjct: 523 TAIYVYMYSFYYYFFKTK-MYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIY 581 Query: 291 SSVKID 274 ++VKID Sbjct: 582 TNVKID 587
>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor| (SM-11044-binding protein) (EP70-P-iso) Length = 589 Score = 64.3 bits (155), Expect = 3e-10 Identities = 35/126 (27%), Positives = 59/126 (46%) Frame = -1 Query: 651 LFFILSSIWLGRFYYXXXXXXXXXXXXXXVCGEVSLVLTYMHLCVEDWKWWWKXXXXXXX 472 ++FI +S W + YY V V++V TY L ED++W W Sbjct: 465 MYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAAS 524 Query: 471 XXXXXFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGFLLSFYFVHYLF 292 ++YS Y F + + G + Y GY + + A+ + GAIG++ + FV ++ Sbjct: 525 TAIYVYMYSFYYYFFKTK-MYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIY 583 Query: 291 SSVKID 274 ++VKID Sbjct: 584 TNVKID 589
>YEU3_YEAST (P40071) Hypothetical protein YER113C precursor| Length = 706 Score = 45.8 bits (107), Expect = 1e-04 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 8/126 (6%) Frame = -1 Query: 645 FILSSIWLGR--FYYXXXXXXXXXXXXXXVCGEVSLVLTY--MHLCVEDW----KWWWKX 490 ++ S+WL + FYY + E+S++ +Y M C ED W WK Sbjct: 576 YVYKSLWLEKTTFYYFYGFLFLSIILLCVLTMEISIIGSYLLMRFCFEDKVVRNNWRWKC 635 Query: 489 XXXXXXXXXXXFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGFLLSFY 310 LYS+ Y +F + ++ G S + + YSLI L GA+ +L + + Sbjct: 636 FEMGFSGGVYMELYSL-YYIFAVLNIHGFSSILISICYSLIFNVMCSLGLGALSYLTASW 694 Query: 309 FVHYLF 292 F++ ++ Sbjct: 695 FINKIY 700
>CBIW_BACME (O87688) Putative 2Fe-2S ferredoxin| Length = 127 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +1 Query: 337 TSRQHDGKCHDQGVAKVERRGDWPAQAPE-VEHQVVDGV*EDEESNGARSKE 489 T+R +G+C D VA V GDW Q E V H++V E+ + G KE Sbjct: 50 TTRTCNGRCKDAPVAIVYPSGDWYKQVTEKVAHRIV----EEHLAGGCSLKE 97
>NCKX1_RAT (Q9QZM6) Sodium/potassium/calcium exchanger 1| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) Length = 1181 Score = 30.4 bits (67), Expect = 4.8 Identities = 14/37 (37%), Positives = 24/37 (64%) Frame = +1 Query: 328 ADGTSRQHDGKCHDQGVAKVERRGDWPAQAPEVEHQV 438 A+GT + +G+ +G +VE+ G+ A+ EVEH+V Sbjct: 808 AEGTEDEQEGETEAEG-KEVEQEGETEAEGKEVEHEV 843
>ATS18_HUMAN (Q8TE60) ADAMTS-18 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 18) (ADAM-TS 18) (ADAM-TS18) Length = 1221 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 12/49 (24%) Frame = -3 Query: 451 ILHQLPGV----------RPQEPERASLRDALPW--LLPDHGICHHAVY 341 +LHQ P V P++ E S D W L+P HG+C+H Y Sbjct: 1161 LLHQKPPVLRACNTNFCPAPEKREDPSCVDFFNWCHLVPQHGVCNHKFY 1209
>ATS18_MOUSE (Q4VC17) ADAMTS-18 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 18) (ADAM-TS 18) (ADAM-TS18) Length = 1219 Score = 29.6 bits (65), Expect = 8.1 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 12/49 (24%) Frame = -3 Query: 451 ILHQLPGV----------RPQEPERASLRDALPW--LLPDHGICHHAVY 341 +LHQ P V P++ + S D W L+P HG+C+H Y Sbjct: 1159 LLHQKPPVLRACNTNFCPAPEKKDDPSCVDFFSWCHLVPQHGVCNHKFY 1207
>MSX2_HUMAN (P35548) Homeobox protein MSX-2 (Hox-8)| Length = 267 Score = 29.6 bits (65), Expect = 8.1 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +2 Query: 545 RETSPQTMTSRKRTMNRKPKT 607 R TSP T T RK NRKP+T Sbjct: 127 RHTSPTTCTLRKHKTNRKPRT 147 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,947,388 Number of Sequences: 219361 Number of extensions: 1332683 Number of successful extensions: 3091 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3016 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3075 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
