ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16b21 |
|---|---|
| Clone Library Name | barley_pub |
>RS3_ICTPU (Q90YS2) 40S ribosomal protein S3| Length = 245 Score = 135 bits (341), Expect = 5e-32 Identities = 66/84 (78%), Positives = 70/84 (83%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML W Sbjct: 133 GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPW 192 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEE 245 DP GK+GP PLPD V+I PKEE Sbjct: 193 DPSGKIGPKKPLPDHVSIVEPKEE 216
>RS32_XENLA (P47835) 40S ribosomal protein S3-B (S1B)| Length = 246 Score = 134 bits (338), Expect = 1e-31 Identities = 65/84 (77%), Positives = 70/84 (83%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML W Sbjct: 133 GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPW 192 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEE 245 DP GK+GP PLPD V+I PK+E Sbjct: 193 DPSGKIGPKKPLPDHVSIVEPKDE 216
>RS31_XENLA (P02350) 40S ribosomal protein S3-A (S1A)| Length = 246 Score = 134 bits (338), Expect = 1e-31 Identities = 65/84 (77%), Positives = 70/84 (83%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML W Sbjct: 133 GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPW 192 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEE 245 DP GK+GP PLPD V+I PK+E Sbjct: 193 DPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3_RAT (P62909) 40S ribosomal protein S3| Length = 243 Score = 134 bits (338), Expect = 1e-31 Identities = 65/84 (77%), Positives = 70/84 (83%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML W Sbjct: 133 GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPW 192 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEE 245 DP GK+GP PLPD V+I PK+E Sbjct: 193 DPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3_MOUSE (P62908) 40S ribosomal protein S3| Length = 243 Score = 134 bits (338), Expect = 1e-31 Identities = 65/84 (77%), Positives = 70/84 (83%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML W Sbjct: 133 GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPW 192 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEE 245 DP GK+GP PLPD V+I PK+E Sbjct: 193 DPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3_PONPY (Q5R465) 40S ribosomal protein S3| Length = 243 Score = 134 bits (337), Expect = 1e-31 Identities = 65/84 (77%), Positives = 70/84 (83%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML W Sbjct: 133 GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPW 192 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEE 245 DP GK+GP PLPD V+I PK+E Sbjct: 193 DPTGKIGPKKPLPDHVSIVEPKDE 216
>RS3_HUMAN (P23396) 40S ribosomal protein S3| Length = 243 Score = 134 bits (337), Expect = 1e-31 Identities = 65/84 (77%), Positives = 70/84 (83%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML W Sbjct: 133 GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPW 192 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEE 245 DP GK+GP PLPD V+I PK+E Sbjct: 193 DPTGKIGPKKPLPDHVSIVEPKDE 216
>RS3_BOVIN (Q3T169) 40S ribosomal protein S3| Length = 243 Score = 134 bits (337), Expect = 1e-31 Identities = 65/84 (77%), Positives = 70/84 (83%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML W Sbjct: 133 GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPW 192 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEE 245 DP GK+GP PLPD V+I PK+E Sbjct: 193 DPTGKIGPKKPLPDHVSIVEPKDE 216
>RS3_AMBME (P79891) 40S ribosomal protein S3| Length = 253 Score = 134 bits (337), Expect = 1e-31 Identities = 65/84 (77%), Positives = 70/84 (83%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQGVLGIKVKIML W Sbjct: 133 GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLAW 192 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEE 245 DP GK+GP PLPD V+I PK+E Sbjct: 193 DPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3_DROME (Q06559) 40S ribosomal protein S3| Length = 246 Score = 128 bits (321), Expect = 9e-30 Identities = 61/90 (67%), Positives = 70/90 (77%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV+VSGKLR QRAKSMKF DG MI SG P N+Y++ A RHVLLRQGVLGIKVK+ML + Sbjct: 135 GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPY 194 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEEDELRPP 227 DPK K+GP PLPD V++ PKEE P Sbjct: 195 DPKNKIGPKKPLPDNVSVVEPKEEKIYETP 224
>RS3_MANSE (P48153) 40S ribosomal protein S3| Length = 243 Score = 124 bits (311), Expect = 1e-28 Identities = 63/105 (60%), Positives = 74/105 (70%), Gaps = 1/105 (0%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV+VSGKLR QRAKSMKF DG MI SG P N+Y++ A RHVLLRQGVLGIKVKIML W Sbjct: 134 GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPW 193 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEED-ELRPPALIEV*TPSSASRP 185 D +GK GP P PD + + PK+E L P + I P+ +P Sbjct: 194 DQQGKNGPKKPQPDHILVTEPKDEPAPLEPTSDIRSLAPAPLPQP 238
>RS3_YEAST (P05750) 40S ribosomal protein S3 (YS3) (RP13)| Length = 239 Score = 116 bits (291), Expect = 3e-26 Identities = 60/92 (65%), Positives = 72/92 (78%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV+VSGKLRA RAK+MKF DG++I SGQPVN++ID A RHVL+RQGVLGIKVKIM D Sbjct: 132 GCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMRD- 190 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEEDELRPPAL 221 K + GP LPD VTI PKEE+ + P++ Sbjct: 191 PAKSRTGPKA-LPDAVTIIEPKEEEPILAPSV 221
>RS3_CAEEL (P48152) 40S ribosomal protein S3| Length = 247 Score = 116 bits (290), Expect = 4e-26 Identities = 59/84 (70%), Positives = 66/84 (78%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G EVIVSGKLR QRAK+MKF DG MI SG PVN+YI AVRHV LRQGV+GIKVKIML + Sbjct: 135 GVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPY 194 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEE 245 DP+G+ GP LPD V I P+EE Sbjct: 195 DPRGQNGPRNALPDHVQIVEPQEE 218
>RS3_SCHPO (O60128) 40S ribosomal protein S3| Length = 249 Score = 112 bits (279), Expect = 7e-25 Identities = 56/90 (62%), Positives = 68/90 (75%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV++SGKLRA RAKSMKF DG+MI SGQP ++ID+A RHVLLRQGVLG+KVKIML Sbjct: 135 GCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIML-- 192 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEEDELRPP 227 P+ K LPD+V + PKEE+ + P Sbjct: 193 -PEPKTRQKKSLPDIVVVLDPKEEEPITKP 221
>RS3_ENCCU (Q8SQM3) 40S ribosomal protein S3| Length = 228 Score = 100 bits (249), Expect = 2e-21 Identities = 47/83 (56%), Positives = 62/83 (74%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GC++IVSGKL+ QRAKS+KF+DG +I SG V +YI+ V +QGV+GI+V+IML + Sbjct: 144 GCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIMLPY 203 Query: 316 DPKGKLGPTTPLPDLVTIHPPKE 248 DP+G LGP PLPD +TI P E Sbjct: 204 DPEGVLGPNYPLPDRITILEPSE 226
>RS3_METBF (Q46GA1) 30S ribosomal protein S3P| Length = 311 Score = 60.5 bits (145), Expect = 2e-09 Identities = 33/83 (39%), Positives = 44/83 (53%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV++SGKL R++ KF DGY+ SG PV+E +D + + G LG KV+I Sbjct: 127 GCEVVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVDEGFAVAIKKLGTLGCKVRI---- 182 Query: 316 DPKGKLGPTTPLPDLVTIHPPKE 248 + P LPD T P E Sbjct: 183 -----IQPGVVLPDSYTTTEPSE 200
>RS3_METMA (Q8PV44) 30S ribosomal protein S3P| Length = 307 Score = 59.7 bits (143), Expect = 4e-09 Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 1/104 (0%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV++SGKL R++ KF DGY+ SG PV E +D + + G LG KV+I Sbjct: 127 GCEVVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVDEGFAVAIKKLGTLGCKVRI---- 182 Query: 316 DPKGKLGPTTPLPDLVTIHPPKE-EDELRPPALIEV*TPSSASR 188 + P LPD + E E+ PA +V P+ A + Sbjct: 183 -----IQPGVVLPDSYKVRESVEIEEPAEKPAEKQVEKPAVAPK 221
>RS3_METAC (Q8TRU1) 30S ribosomal protein S3P| Length = 318 Score = 58.2 bits (139), Expect = 1e-08 Identities = 32/89 (35%), Positives = 48/89 (53%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCEV++SGKL R++ KF DGY+ SG PV E +D + + G LG KV+I+ Sbjct: 127 GCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRII--- 183 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEEDELRP 230 P L + + + V + P E+ +P Sbjct: 184 QPGVVLPDSYKVRESVEVEEPAEKPAEKP 212
>RS3_PYRAB (Q9V1U1) 30S ribosomal protein S3P| Length = 210 Score = 56.2 bits (134), Expect = 5e-08 Identities = 31/87 (35%), Positives = 44/87 (50%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G E+ +SGKL +RAKS++F GY+ G P + LL+ GV+G+KV IM Sbjct: 127 GVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM--- 183 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEEDEL 236 P LPD + I E+E+ Sbjct: 184 ------PPDARLPDEIEIIEKPVEEEV 204
>RS3_PYRHO (O59424) 30S ribosomal protein S3P| Length = 210 Score = 55.8 bits (133), Expect = 6e-08 Identities = 31/87 (35%), Positives = 44/87 (50%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G E+ +SGKL +RAKS++F GY+ G P + LL+ GV+G+KV IM Sbjct: 127 GVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM--- 183 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEEDEL 236 P LPD + I E+E+ Sbjct: 184 ------PPDARLPDEIEIVEKPAEEEV 204
>RS3_METTH (O26116) 30S ribosomal protein S3P| Length = 258 Score = 55.5 bits (132), Expect = 8e-08 Identities = 31/82 (37%), Positives = 44/82 (53%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G EV +SGK+R R+ + KF DGY+ G+P +++ V L+ GVLG+ V+IM Sbjct: 126 GVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRIM--- 182 Query: 316 DPKGKLGPTTPLPDLVTIHPPK 251 P LPD V I P+ Sbjct: 183 ------PPDVVLPDKVEIEDPR 198
>RS3_PYRFU (Q8U004) 30S ribosomal protein S3P| Length = 210 Score = 55.1 bits (131), Expect = 1e-07 Identities = 31/87 (35%), Positives = 44/87 (50%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G E+ +SGKL +RAKS++F GY+ G P + LL+ GV+G+KV IM Sbjct: 127 GVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM--- 183 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEEDEL 236 P LPD + I E+E+ Sbjct: 184 ------PPGARLPDEIEIIEKPVEEEV 204
>RS3_METKA (Q8TX35) 30S ribosomal protein S3P| Length = 227 Score = 54.3 bits (129), Expect = 2e-07 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G +I+SGKL RA++ KF +G + G+P +EY+ + + G +G+ V+IM Sbjct: 135 GAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVTVRIM--- 191 Query: 316 DPKGKLGPTTPLPDLVTIHPPKE-EDELR 233 P LPD + I PP+E EDEL+ Sbjct: 192 ------PPDVELPDELEIRPPEEVEDELK 214
>RS3_SULAC (Q4JB46) 30S ribosomal protein S3P| Length = 231 Score = 53.9 bits (128), Expect = 2e-07 Identities = 27/56 (48%), Positives = 38/56 (67%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKI 329 G EVIVSGKL ++RAK K K+G + SGQ + + ID A+ +L+ GV G++V I Sbjct: 128 GAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVVI 183
>RS3_PYRKO (Q5JDH5) 30S ribosomal protein S3P| Length = 209 Score = 53.9 bits (128), Expect = 2e-07 Identities = 30/85 (35%), Positives = 42/85 (49%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G E+ +SGKL +RAKS++F GY+ G P + L+ GV+G+KV IM Sbjct: 127 GVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSRGYAQAQLKLGVIGVKVSIM--- 183 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEED 242 P LPD + I EE+ Sbjct: 184 ------PPDAKLPDEIEIKEIVEEE 202
>RS3_METMP (Q6LXE7) 30S ribosomal protein S3P| Length = 211 Score = 52.8 bits (125), Expect = 5e-07 Identities = 28/78 (35%), Positives = 43/78 (55%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G +IVSGKL +R+++ KF DGYM G+P ++ + + L+ G++G+ VKIM Sbjct: 126 GVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVKIM--- 182 Query: 316 DPKGKLGPTTPLPDLVTI 263 P LPD + I Sbjct: 183 ------RPDVSLPDEIVI 194
>RS3_METJA (P54034) 30S ribosomal protein S3P| Length = 208 Score = 52.8 bits (125), Expect = 5e-07 Identities = 33/88 (37%), Positives = 46/88 (52%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G VI+SGKL +RA++ KF GYM G+P E +D + GV+G+ VKIM Sbjct: 126 GVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKPGVIGVTVKIM--- 182 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEEDELR 233 P LPD + I KE+ E++ Sbjct: 183 ------RPDVLLPDEIII---KEDAEVK 201
>RS3_SULSO (Q9UXA0) 30S ribosomal protein S3P| Length = 229 Score = 52.8 bits (125), Expect = 5e-07 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 2/80 (2%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIM--L 323 G E+I+SGKL +RA+ K K+G + SGQ + + ID A+ +L+ G+ G++V I L Sbjct: 128 GAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVVITKPL 187 Query: 322 DWDPKGKLGPTTPLPDLVTI 263 + K L + +P V++ Sbjct: 188 KIEDKINLKESPSVPQEVSV 207
>RS3_HALMA (P20281) 30S ribosomal protein S3P (HmaS3) (HS1)| Length = 304 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/74 (32%), Positives = 42/74 (56%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G E+++SGK+ R++ KF GY+ +G+P E +D+ V +++ G +G++VKI Sbjct: 127 GAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRVKI---- 182 Query: 316 DPKGKLGPTTPLPD 275 + P LPD Sbjct: 183 -----IPPNAELPD 191
>RS3_SULTO (Q975I7) 30S ribosomal protein S3P| Length = 225 Score = 51.2 bits (121), Expect = 1e-06 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 10/74 (13%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKV------ 335 G EVI+SGKL ++RAK K K+G + SG +++ +D AV +L+ GV G+++ Sbjct: 128 GAEVIISGKLTSERAKYEKLKEGVVYKSGAFLDKIVDRAVAIAMLKPGVYGVEILITKPM 187 Query: 334 ----KIMLDWDPKG 305 KI L PKG Sbjct: 188 KSVDKIELREQPKG 201
>RS3_NATPD (Q3IMY2) 30S ribosomal protein S3P| Length = 305 Score = 50.4 bits (119), Expect = 3e-06 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G E+I+SGK+ R++ KF GY+ +G+P +D+ V +++ G +G++VKI Sbjct: 127 GAEIILSGKVTGARSRVEKFNRGYIKHNGEPAESIVDSGVGTAVMKLGTIGVQVKI---- 182 Query: 316 DPKGKLGPTTPLPDLVTIHPPKE-EDELRPP 227 + P LPD ++ E ED + P Sbjct: 183 -----IPPEAELPDDFEVYEDIEVEDFVEEP 208
>RS3_AERPE (Q9YF78) 30S ribosomal protein S3P| Length = 246 Score = 50.1 bits (118), Expect = 3e-06 Identities = 25/62 (40%), Positives = 38/62 (61%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G E+ +SGKL ++RA+ KFK G + SG V+E +D A + L +GV+G+ V I+ Sbjct: 129 GVEITISGKLTSERARFEKFKAGKVYKSGHKVDELVDRASAYARLPKGVIGVDVIIVKPG 188 Query: 316 DP 311 P Sbjct: 189 KP 190
>RS3_HALSA (P15009) 30S ribosomal protein S3P (HS4) (HHAS3)| Length = 302 Score = 48.1 bits (113), Expect = 1e-05 Identities = 25/87 (28%), Positives = 43/87 (49%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G E+++SGK+ R + KF GY+ +G+P E +D +++ G +G+ VKI Sbjct: 127 GAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVDHGKGVAVMKLGTIGVNVKI---- 182 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEEDEL 236 + P LPD I + ++L Sbjct: 183 -----IPPNAELPDDFEIQEDADIEDL 204
>RS3_ARCFU (O28360) 30S ribosomal protein S3P| Length = 229 Score = 47.0 bits (110), Expect = 3e-05 Identities = 24/74 (32%), Positives = 39/74 (52%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 GCE+ +SGKL ++RA++ KF G ++ +G P + + + GVLG+ V+I Sbjct: 126 GCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSVRI---- 181 Query: 316 DPKGKLGPTTPLPD 275 + P LPD Sbjct: 182 -----IPPDVTLPD 190
>RS3_PYRAE (Q8ZWI0) 30S ribosomal protein S3P| Length = 218 Score = 44.7 bits (104), Expect = 1e-04 Identities = 23/56 (41%), Positives = 33/56 (58%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKI 329 G E++VSGKL +RA+ K G + G + AV HVLL+ G+ GI+V+I Sbjct: 137 GFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
>RS3_PICTO (Q6L1C1) 30S ribosomal protein S3P| Length = 217 Score = 43.1 bits (100), Expect = 4e-04 Identities = 25/87 (28%), Positives = 42/87 (48%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G + + GK+ +RA++ KF G + SG+P ++ L+ G++G+ V+I Sbjct: 126 GVLIRIGGKISGERARAQKFMFGKIKYSGEPARSGVEYGFSEAKLKTGIIGVSVRI---- 181 Query: 316 DPKGKLGPTTPLPDLVTIHPPKEEDEL 236 L LPD + I P K E E+ Sbjct: 182 -----LKSNYRLPDDIEIKPVKIEKEV 203
>RS3_THEAC (Q9HIR5) 30S ribosomal protein S3P| Length = 225 Score = 39.7 bits (91), Expect = 0.004 Identities = 25/78 (32%), Positives = 40/78 (51%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G + +SGK+ +RA+ KF G + SG+P ++ + L+ G+LG+ VKI Sbjct: 126 GVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTVKI---- 181 Query: 316 DPKGKLGPTTPLPDLVTI 263 L P LPD+ +I Sbjct: 182 -----LNPEYKLPDVFSI 194
>RS3_THEVO (Q97BX1) 30S ribosomal protein S3P| Length = 225 Score = 39.3 bits (90), Expect = 0.006 Identities = 25/78 (32%), Positives = 40/78 (51%) Frame = -1 Query: 496 GCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDW 317 G + +SGK+ +RA+ KF G + SG+P ++ + L+ G+LG+ VKI Sbjct: 126 GVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMLVGFSTAKLKVGILGVTVKI---- 181 Query: 316 DPKGKLGPTTPLPDLVTI 263 L P LPD+ +I Sbjct: 182 -----LNPEYKLPDVFSI 194
>IL2RB_PANTR (Q38J84) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 551 Score = 33.5 bits (75), Expect = 0.32 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -1 Query: 343 IKVKIMLDWDPKGKLGPTTP-LPDLVTIHPPKE 248 ++ ++ DWDP+ LGP TP +PDLV PP E Sbjct: 459 LQERVPRDWDPQ-PLGPPTPGVPDLVDFQPPPE 490
>IL2RB_HUMAN (P14784) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (p75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 551 Score = 33.5 bits (75), Expect = 0.32 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -1 Query: 343 IKVKIMLDWDPKGKLGPTTP-LPDLVTIHPPKE 248 ++ ++ DWDP+ LGP TP +PDLV PP E Sbjct: 459 LQERVPRDWDPQ-PLGPPTPGVPDLVDFQPPPE 490
>RT03_ORYSA (P46773) Mitochondrial ribosomal protein S3| Length = 538 Score = 30.0 bits (66), Expect = 3.5 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Frame = -1 Query: 496 GCEVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLD 320 G + SG+L A+ A++ K G +S N+ ID A+ V R G+ G+KV+I Sbjct: 467 GIRICCSGRLGGAEIARTECGKYGK--TSCNVFNQKIDYALAEVSTRNGISGVKVRISYS 524 Query: 319 WDPKGK 302 + KG+ Sbjct: 525 QNKKGR 530
>IL2RB_MACFA (Q38J85) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 551 Score = 29.6 bits (65), Expect = 4.6 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = -1 Query: 343 IKVKIMLDWDPKGKLGPTTP-LPDLVTIHPPKE 248 ++ ++ DWDP+ LGP TP +PDLV P E Sbjct: 459 LQERVPRDWDPQP-LGPPTPGVPDLVDFQPRPE 490
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -1 Query: 313 PKGKLGPTTPLPDLVTIHPPKEEDELRPPAL 221 P ++ +PLP + + PP EE L PPAL Sbjct: 646 PPPEVSRLSPLPVVSRLSPPPEESPLSPPAL 676
>CBID_CHRVO (Q7NXR0) Putative cobalt-precorrin-6A synthase [deacetylating] (EC| 2.1.1.-) Length = 377 Score = 29.6 bits (65), Expect = 4.6 Identities = 23/56 (41%), Positives = 27/56 (48%) Frame = +2 Query: 197 TTGSLDLNQSRGAQLVLLLRGVDGDEVRQGGGRAKFALGVPVKHNLHLDTKNALSE 364 TTGS + A L+LLL GVD DEV F L VPV+ LD +E Sbjct: 23 TTGSCATAAVKAA-LMLLLDGVDADEVFISLPDPDFYLAVPVESVAWLDENTVRAE 77
>HXADB_BRARE (P79724) Homeobox protein Hox-A13b (Hox-A13)| Length = 285 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -1 Query: 481 VSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAV 377 VSG+ RAK F GY + QPV Y+D V Sbjct: 123 VSGEEFPSRAKEFAFYQGYSSALTQPVPSYLDVPV 157
>RT03_ARATH (Q95749) Mitochondrial ribosomal protein S3| Length = 556 Score = 28.9 bits (63), Expect = 7.8 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = -1 Query: 496 GCEVIVSGKLR--AQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKI 329 G + SG+L+ A++A++ +K + +S N ID A V R G+LG+KV I Sbjct: 484 GIRICFSGRLKDAAEKAQTKCYK--HRKTSCNVFNHKIDYAPVEVFTRYGILGVKVWI 539
>HXA13_CHICK (Q90X25) Homeobox protein Hox-A13| Length = 290 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = -1 Query: 481 VSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAV 377 VSG+ RAK F GY QPV Y+D V Sbjct: 123 VSGEEFTSRAKEFAFYQGYAAGPYQPVPGYLDVPV 157
>RT03_MAIZE (P27928) Mitochondrial ribosomal protein S3| Length = 559 Score = 28.9 bits (63), Expect = 7.8 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = -1 Query: 496 GCEVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLD 320 G + SG+L A+ A++ K G +S N+ ID A V R G+ G+KV+I Sbjct: 488 GIRICCSGRLGGAEIARTECGKYGK--TSCNVFNQKIDYAPAEVSTRDGISGVKVRISYS 545 Query: 319 WDPKGK 302 + KG+ Sbjct: 546 QNKKGR 551
>RS3_FRATT (Q5NHW2) 30S ribosomal protein S3| Length = 222 Score = 28.9 bits (63), Expect = 7.8 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = -1 Query: 496 GCEVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLD 320 G +++VSG+L A+ A+S +DG + Q +D A L GV+G+KV Sbjct: 148 GIKIMVSGRLGGAEIARSEWARDGRVPL--QTFRADVDYATAEALTTYGVIGVKV----- 200 Query: 319 WDPKGKLGP 293 W KG++ P Sbjct: 201 WIYKGEILP 209
>TBX6_MOUSE (P70327) T-box transcription factor TBX6 (T-box protein 6)| Length = 540 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = -1 Query: 322 DWDPKGKLGPTTPLPDLVTIHP 257 DW+P GK P LPD V IHP Sbjct: 157 DWEPSGKAEPR--LPDRVYIHP 176 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,447,629 Number of Sequences: 219361 Number of extensions: 1187911 Number of successful extensions: 3194 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 3102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3190 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
