ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16a13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY566607.1| Triticum aestivum lipid transfer protein (LPT1) g... 56 6e-05
2gb|AF334185.1|AF334185 Triticum aestivum lipid transfer protein ... 56 6e-05
3gb|AF302788.1|AF302788 Triticum aestivum lipid transfer protein ... 56 6e-05
4emb|AJ852557.1| Triticum aestivum ltp9.5b gene for type 1 non sp... 56 6e-05
5gb|AC161418.4| Mus musculus BAC clone RP23-325K2 from chromosome... 42 0.83
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.83
7dbj|AP005640.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.83
8dbj|AK100917.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.83
9gb|AC132475.4| Mus musculus BAC clone RP23-114P16 from 3, comple... 42 0.83
10gb|AC005222.1| Homo sapiens chromosome 16, cosmid clone RT163 (L... 40 3.3
11emb|AL121777.39|HSJ1057D4 Human DNA sequence from clone RP5-1057... 40 3.3
12gb|AC012676.5| Homo sapiens chromosome 16 clone RP11-295D4, comp... 40 3.3

>gb|AY566607.1| Triticum aestivum lipid transfer protein (LPT1) gene, complete cds
          Length = 3448

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 156  ctcacatggagatcagatcagagcgtttattcatatatat 195
            ||||||||||||||| |||||||| ||||||||| |||||
Sbjct: 3341 ctcacatggagatcatatcagagcatttattcatgtatat 3302



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>gb|AF334185.1|AF334185 Triticum aestivum lipid transfer protein precursor (LTP2) mRNA,
           complete cds
          Length = 730

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 156 ctcacatggagatcagatcagagcgtttattcatatatat 195
           ||||||||||||||| |||||||| ||||||||| |||||
Sbjct: 550 ctcacatggagatcatatcagagcatttattcatgtatat 511



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>gb|AF302788.1|AF302788 Triticum aestivum lipid transfer protein precursor (LTP1) mRNA,
           complete cds
          Length = 737

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 156 ctcacatggagatcagatcagagcgtttattcatatatat 195
           ||||||||||||||| |||||||| ||||||||| |||||
Sbjct: 545 ctcacatggagatcatatcagagcatttattcatgtatat 506



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>emb|AJ852557.1| Triticum aestivum ltp9.5b gene for type 1 non specific lipid
           transfer protein precursor
          Length = 496

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 156 ctcacatggagatcagatcagagcgtttattcatatatat 195
           ||||||||||||||| |||||||| ||||||||| |||||
Sbjct: 491 ctcacatggagatcatatcagagcatttattcatgtatat 452



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>gb|AC161418.4| Mus musculus BAC clone RP23-325K2 from chromosome 3, complete sequence
          Length = 202765

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 83    aaagtaaaaaacaaccatagt 103
             |||||||||||||||||||||
Sbjct: 67013 aaagtaaaaaacaaccatagt 67033



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 157      tcacatggagatcagatcaga 177
                |||||||||||||||||||||
Sbjct: 22847882 tcacatggagatcagatcaga 22847902



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>dbj|AP005640.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0006O15
          Length = 139723

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 157   tcacatggagatcagatcaga 177
             |||||||||||||||||||||
Sbjct: 81220 tcacatggagatcagatcaga 81240



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>dbj|AK100917.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133E20, full
            insert sequence
          Length = 5035

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 157  tcacatggagatcagatcaga 177
            |||||||||||||||||||||
Sbjct: 4798 tcacatggagatcagatcaga 4818



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>gb|AC132475.4| Mus musculus BAC clone RP23-114P16 from 3, complete sequence
          Length = 215899

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 83     aaagtaaaaaacaaccatagt 103
              |||||||||||||||||||||
Sbjct: 210967 aaagtaaaaaacaaccatagt 210987



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>gb|AC005222.1| Homo sapiens chromosome 16, cosmid clone RT163 (LANL), complete
             sequence
          Length = 40619

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   gcgcccatggtgggcagtgg 252
             ||||||||||||||||||||
Sbjct: 25417 gcgcccatggtgggcagtgg 25398



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>emb|AL121777.39|HSJ1057D4 Human DNA sequence from clone RP5-1057D4 on chromosome 20 Contains the
             SRMP1 gene for spermidine synthase pseudogene 1, the 5'
             end of the gene for a novel protein similar to
             glucosamine-6-sulfatases (SULF2) (sulfatase 2, H-SULF2,
             KIAA1247) and a CpG island, complete sequence
          Length = 131888

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   gactcctttctccctcacat 162
             ||||||||||||||||||||
Sbjct: 88928 gactcctttctccctcacat 88909



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>gb|AC012676.5| Homo sapiens chromosome 16 clone RP11-295D4, complete sequence
          Length = 172071

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   gcgcccatggtgggcagtgg 252
             ||||||||||||||||||||
Sbjct: 84403 gcgcccatggtgggcagtgg 84384


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,015,782
Number of Sequences: 3902068
Number of extensions: 2015782
Number of successful extensions: 43982
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43952
Number of HSP's gapped (non-prelim): 30
length of query: 255
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 233
effective length of database: 17,147,199,772
effective search space: 3995297546876
effective search space used: 3995297546876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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