| Clone Name | rbasd16a13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY566607.1| Triticum aestivum lipid transfer protein (LPT1) gene, complete cds Length = 3448 Score = 56.0 bits (28), Expect = 6e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 156 ctcacatggagatcagatcagagcgtttattcatatatat 195 ||||||||||||||| |||||||| ||||||||| ||||| Sbjct: 3341 ctcacatggagatcatatcagagcatttattcatgtatat 3302
>gb|AF334185.1|AF334185 Triticum aestivum lipid transfer protein precursor (LTP2) mRNA, complete cds Length = 730 Score = 56.0 bits (28), Expect = 6e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 156 ctcacatggagatcagatcagagcgtttattcatatatat 195 ||||||||||||||| |||||||| ||||||||| ||||| Sbjct: 550 ctcacatggagatcatatcagagcatttattcatgtatat 511
>gb|AF302788.1|AF302788 Triticum aestivum lipid transfer protein precursor (LTP1) mRNA, complete cds Length = 737 Score = 56.0 bits (28), Expect = 6e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 156 ctcacatggagatcagatcagagcgtttattcatatatat 195 ||||||||||||||| |||||||| ||||||||| ||||| Sbjct: 545 ctcacatggagatcatatcagagcatttattcatgtatat 506
>emb|AJ852557.1| Triticum aestivum ltp9.5b gene for type 1 non specific lipid transfer protein precursor Length = 496 Score = 56.0 bits (28), Expect = 6e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 156 ctcacatggagatcagatcagagcgtttattcatatatat 195 ||||||||||||||| |||||||| ||||||||| ||||| Sbjct: 491 ctcacatggagatcatatcagagcatttattcatgtatat 452
>gb|AC161418.4| Mus musculus BAC clone RP23-325K2 from chromosome 3, complete sequence Length = 202765 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 aaagtaaaaaacaaccatagt 103 ||||||||||||||||||||| Sbjct: 67013 aaagtaaaaaacaaccatagt 67033
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 tcacatggagatcagatcaga 177 ||||||||||||||||||||| Sbjct: 22847882 tcacatggagatcagatcaga 22847902
>dbj|AP005640.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0006O15 Length = 139723 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 tcacatggagatcagatcaga 177 ||||||||||||||||||||| Sbjct: 81220 tcacatggagatcagatcaga 81240
>dbj|AK100917.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133E20, full insert sequence Length = 5035 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 tcacatggagatcagatcaga 177 ||||||||||||||||||||| Sbjct: 4798 tcacatggagatcagatcaga 4818
>gb|AC132475.4| Mus musculus BAC clone RP23-114P16 from 3, complete sequence Length = 215899 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 aaagtaaaaaacaaccatagt 103 ||||||||||||||||||||| Sbjct: 210967 aaagtaaaaaacaaccatagt 210987
>gb|AC005222.1| Homo sapiens chromosome 16, cosmid clone RT163 (LANL), complete sequence Length = 40619 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gcgcccatggtgggcagtgg 252 |||||||||||||||||||| Sbjct: 25417 gcgcccatggtgggcagtgg 25398
>emb|AL121777.39|HSJ1057D4 Human DNA sequence from clone RP5-1057D4 on chromosome 20 Contains the SRMP1 gene for spermidine synthase pseudogene 1, the 5' end of the gene for a novel protein similar to glucosamine-6-sulfatases (SULF2) (sulfatase 2, H-SULF2, KIAA1247) and a CpG island, complete sequence Length = 131888 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 gactcctttctccctcacat 162 |||||||||||||||||||| Sbjct: 88928 gactcctttctccctcacat 88909
>gb|AC012676.5| Homo sapiens chromosome 16 clone RP11-295D4, complete sequence Length = 172071 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gcgcccatggtgggcagtgg 252 |||||||||||||||||||| Sbjct: 84403 gcgcccatggtgggcagtgg 84384 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,015,782 Number of Sequences: 3902068 Number of extensions: 2015782 Number of successful extensions: 43982 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43952 Number of HSP's gapped (non-prelim): 30 length of query: 255 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 233 effective length of database: 17,147,199,772 effective search space: 3995297546876 effective search space used: 3995297546876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)