ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15i23 |
|---|---|
| Clone Library Name | barley_pub |
>DED1_USTMA (Q4P733) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 672 Score = 52.8 bits (125), Expect = 7e-07 Identities = 23/32 (71%), Positives = 27/32 (84%) Frame = -2 Query: 570 ATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 ATAFFN GN ++ R L EL++EANQEVPQWLE Sbjct: 550 ATAFFNRGNKNIVRDLIELLKEANQEVPQWLE 581
>DED1_CRYNE (Q5KN36) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)| Length = 637 Score = 48.5 bits (114), Expect = 1e-05 Identities = 20/31 (64%), Positives = 26/31 (83%) Frame = -2 Query: 570 ATAFFNEGNMSLARPLCELMQEANQEVPQWL 478 +TAFFN GN ++ + L EL++EANQEVPQWL Sbjct: 522 STAFFNRGNTNIGKDLIELLKEANQEVPQWL 552
>DDX3Y_HUMAN (O15523) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box| protein 3, Y-chromosomal) Length = 660 Score = 46.6 bits (109), Expect = 5e-05 Identities = 20/33 (60%), Positives = 26/33 (78%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 LAT+FFNE NM++ + L +L+ EA QEVP WLE Sbjct: 538 LATSFFNEKNMNITKDLLDLLVEAKQEVPSWLE 570
>DED1_NEUCR (Q9P6U9) ATP-dependent RNA helicase ded-1 (EC 3.6.1.-)| Length = 688 Score = 46.6 bits (109), Expect = 5e-05 Identities = 21/33 (63%), Positives = 26/33 (78%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 +ATAFFN GN + R L EL++EANQEVP +LE Sbjct: 552 IATAFFNRGNRGVVRELLELLKEANQEVPAFLE 584
>DDX3Y_PONPY (Q5RF43) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box| protein 3, Y-chromosomal) Length = 658 Score = 46.6 bits (109), Expect = 5e-05 Identities = 20/33 (60%), Positives = 26/33 (78%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 LAT+FFNE NM++ + L +L+ EA QEVP WLE Sbjct: 538 LATSFFNEKNMNITKDLLDLLVEAKQEVPSWLE 570
>DED1_GIBZE (Q4I7K4) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 675 Score = 45.8 bits (107), Expect = 9e-05 Identities = 20/33 (60%), Positives = 26/33 (78%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 +ATAFFN GN + R L +L++EANQEVP +LE Sbjct: 544 IATAFFNRGNRGIVRELMDLLKEANQEVPAFLE 576
>DDX3Y_MOUSE (Q62095) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box| protein 3, Y-chromosomal) (DEAD-box RNA helicase DEAD2) (mDEAD2) (D1Pas1-related sequence 1) Length = 658 Score = 45.4 bits (106), Expect = 1e-04 Identities = 19/33 (57%), Positives = 26/33 (78%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 LAT+FFNE N+++ + L +L+ EA QEVP WLE Sbjct: 539 LATSFFNERNLNITKDLLDLLVEAKQEVPSWLE 571
>DDX3X_MOUSE (Q62167) ATP-dependent RNA helicase DDX3X (EC 3.6.1.-) (DEAD box| protein 3, X-chromosomal) (DEAD box RNA helicase DEAD3) (mDEAD3) (Embryonic RNA helicase) (D1Pas1-related sequence 2) Length = 661 Score = 45.1 bits (105), Expect = 1e-04 Identities = 19/33 (57%), Positives = 26/33 (78%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 LAT+FFNE N+++ + L +L+ EA QEVP WLE Sbjct: 539 LATSFFNERNINITKDLLDLLVEAKQEVPSWLE 571
>DDX3X_HUMAN (O00571) ATP-dependent RNA helicase DDX3X (EC 3.6.1.-) (DEAD box| protein 3, X-chromosomal) (Helicase-like protein 2) (HLP2) (DEAD box, X isoform) Length = 661 Score = 45.1 bits (105), Expect = 1e-04 Identities = 19/33 (57%), Positives = 26/33 (78%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 LAT+FFNE N+++ + L +L+ EA QEVP WLE Sbjct: 539 LATSFFNERNINITKDLLDLLVEAKQEVPSWLE 571
>AN3_XENLA (P24346) Putative ATP-dependent RNA helicase an3 (EC 3.6.1.-)| Length = 697 Score = 45.1 bits (105), Expect = 1e-04 Identities = 19/33 (57%), Positives = 26/33 (78%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 LAT+FFNE N+++ + L +L+ EA QEVP WLE Sbjct: 581 LATSFFNEKNINITKDLLDLLVEAKQEVPSWLE 613
>PL10_MOUSE (P16381) Putative ATP-dependent RNA helicase Pl10 (EC 3.6.1.-)| Length = 660 Score = 45.1 bits (105), Expect = 1e-04 Identities = 19/33 (57%), Positives = 26/33 (78%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 LAT+FFNE N+++ + L +L+ EA QEVP WLE Sbjct: 539 LATSFFNERNINITKDLLDLLVEAKQEVPSWLE 571
>DDX3Y_PANTR (Q6GVM6) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box| protein 3, Y-chromosomal) Length = 660 Score = 45.1 bits (105), Expect = 1e-04 Identities = 19/33 (57%), Positives = 26/33 (78%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 LAT+FFNE N+++ + L +L+ EA QEVP WLE Sbjct: 538 LATSFFNEKNINITKDLLDLLVEAKQEVPSWLE 570
>DED1_YARLI (Q6CB69) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 618 Score = 44.3 bits (103), Expect = 2e-04 Identities = 18/33 (54%), Positives = 27/33 (81%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 +ATAFFN GN + R L ++++EA+Q+VPQ+LE Sbjct: 517 IATAFFNRGNKGIVRELIDILKEAHQDVPQFLE 549
>DED1_ASPOR (Q2UGK3) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)| Length = 675 Score = 43.9 bits (102), Expect = 3e-04 Identities = 19/33 (57%), Positives = 26/33 (78%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 +ATAFFN GN + R L +L++EA+QEVP +LE Sbjct: 547 IATAFFNRGNRGVVRDLIDLLKEAHQEVPSFLE 579
>DED1_ASHGO (Q75B50) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 623 Score = 43.5 bits (101), Expect = 4e-04 Identities = 18/32 (56%), Positives = 26/32 (81%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWL 478 LATAFFN GN ++ + L ++++EANQEVP +L Sbjct: 501 LATAFFNRGNKNVVKELVDILEEANQEVPSFL 532
>DED1_ASPFU (Q4WP13) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)| Length = 674 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/33 (54%), Positives = 25/33 (75%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 +ATAFFN N + R L +L++EA+QEVP +LE Sbjct: 549 IATAFFNRSNRGVVRELIDLLKEAHQEVPSFLE 581
>DED1_KLULA (Q6CLR3) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 627 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/32 (56%), Positives = 24/32 (75%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWL 478 +AT FFN GN ++A+ L L+ EANQEVP +L Sbjct: 515 VATTFFNRGNKNVAKELVSLLSEANQEVPSFL 546
>DED1_CANGA (Q8TFK8) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 617 Score = 41.2 bits (95), Expect = 0.002 Identities = 17/33 (51%), Positives = 26/33 (78%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 +ATAFFN N ++ + L E+++EANQE+P +LE Sbjct: 501 VATAFFNRDNNNIVKGLYEILEEANQEIPPFLE 533
>DED1_CANAL (Q5A4E2) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 672 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/32 (56%), Positives = 24/32 (75%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWL 478 +ATAFFN N ++ + L EL+ EANQEVP +L Sbjct: 542 IATAFFNRNNKNVVKGLIELLSEANQEVPDFL 573
>DED1_SCHPO (O13370) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)| Length = 636 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -2 Query: 570 ATAFFNEGNMSLARPLCELMQEANQEVPQWL 478 A AFFN N +A+ L EL+QEANQE P +L Sbjct: 530 AVAFFNRNNKGIAKELIELLQEANQECPSFL 560
>DED1_YEAST (P06634) ATP-dependent RNA helicase DED1 (EC 3.6.1.-) (DEAD box| protein 1) Length = 604 Score = 40.0 bits (92), Expect = 0.005 Identities = 18/33 (54%), Positives = 25/33 (75%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 LATAFFN N ++ + L E++ EANQEVP +L+ Sbjct: 498 LATAFFNSENSNIVKGLHEILTEANQEVPSFLK 530
>DED1_DEBHA (Q6BU54) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 630 Score = 39.7 bits (91), Expect = 0.006 Identities = 16/32 (50%), Positives = 24/32 (75%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWL 478 +ATAFFN N ++ + L +L+ EANQE+P +L Sbjct: 512 IATAFFNRNNKNIVKGLVDLLTEANQEIPDFL 543
>DBP1_YEAST (P24784) ATP-dependent RNA helicase DBP1 (EC 3.6.1.-) (DEAD box| protein 1) (Helicase CA1) Length = 617 Score = 39.3 bits (90), Expect = 0.008 Identities = 16/32 (50%), Positives = 24/32 (75%) Frame = -2 Query: 573 LATAFFNEGNMSLARPLCELMQEANQEVPQWL 478 +AT+FFN N ++ + L E++ EANQEVP +L Sbjct: 510 VATSFFNSNNQNIVKGLMEILNEANQEVPTFL 541
>DBP2_CANAL (Q59LU0) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)| Length = 562 Score = 38.1 bits (87), Expect = 0.018 Identities = 17/32 (53%), Positives = 22/32 (68%) Frame = -2 Query: 570 ATAFFNEGNMSLARPLCELMQEANQEVPQWLE 475 A +FF EGN L LC++M+EANQ VP L+ Sbjct: 474 AISFFTEGNSKLGGDLCKIMREANQTVPPELQ 505
>DBP2_KLULA (Q6CIV2) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)| Length = 554 Score = 35.0 bits (79), Expect = 0.15 Identities = 15/31 (48%), Positives = 22/31 (70%) Frame = -2 Query: 570 ATAFFNEGNMSLARPLCELMQEANQEVPQWL 478 A +FF EGN SL L ++M+EA Q++P+ L Sbjct: 460 AISFFTEGNKSLGAALIKIMREAKQDIPEEL 490
>DBP2_DEBHA (Q6BY27) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)| Length = 536 Score = 33.9 bits (76), Expect = 0.34 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -2 Query: 570 ATAFFNEGNMSLARPLCELMQEANQEVP 487 A +FF + N L LC++M+EANQ +P Sbjct: 452 AVSFFTDNNSKLGGDLCKIMREANQTIP 479
>DBP2_ASHGO (Q755N4) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)| Length = 557 Score = 33.1 bits (74), Expect = 0.58 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -2 Query: 570 ATAFFNEGNMSLARPLCELMQEANQEVPQ 484 A +FF E N +L L +M+EA QE+PQ Sbjct: 461 AISFFTEANKTLGAQLISIMREAKQEIPQ 489
>DDX4_RAT (Q64060) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)| (DEAD box protein 4) (VASA homolog) (rVLG) Length = 713 Score = 33.1 bits (74), Expect = 0.58 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = -2 Query: 570 ATAFFN-EGNMSLARPLCELMQEANQEVPQWLE 475 A +FF+ E + LA+PL +++ +A Q+VP WLE Sbjct: 625 AISFFDTESDNHLAQPLVKVLSDAQQDVPAWLE 657
>DDX4_HUMAN (Q9NQI0) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)| (DEAD box protein 4) (VASA homolog) Length = 724 Score = 32.7 bits (73), Expect = 0.75 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = -2 Query: 570 ATAFFN-EGNMSLARPLCELMQEANQEVPQWLE 475 A +FF+ E + LA+PL +++ +A Q+VP WLE Sbjct: 640 AISFFDLESDNHLAQPLVKVLTDAQQDVPAWLE 672
>DDX4_PIG (Q6GWX0) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)| (DEAD box protein 4) (VASA homolog) (VASA-like protein) Length = 722 Score = 32.7 bits (73), Expect = 0.75 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = -2 Query: 570 ATAFFN-EGNMSLARPLCELMQEANQEVPQWLE 475 A +FF+ E + LA+PL +++ +A Q+VP WLE Sbjct: 638 AISFFDLESDNHLAQPLVKVLTDAQQDVPAWLE 670
>DDX4_MACFA (Q4R5S7) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)| (DEAD box protein 4) (VASA homolog) Length = 725 Score = 32.7 bits (73), Expect = 0.75 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = -2 Query: 570 ATAFFN-EGNMSLARPLCELMQEANQEVPQWLE 475 A +FF+ E + LA+PL +++ +A Q+VP WLE Sbjct: 641 AISFFDLESDNHLAQPLVKVLTDAQQDVPAWLE 673
>DDX4_MOUSE (Q61496) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)| (DEAD box protein 4) (VASA homolog) (Mvh) Length = 702 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = -2 Query: 570 ATAFFN-EGNMSLARPLCELMQEANQEVPQWLE 475 A +FF+ + + LA+PL +++ +A Q+VP WLE Sbjct: 613 AISFFDTDSDNHLAQPLVKVLSDAQQDVPAWLE 645
>DBP2_CANGA (Q6FLF3) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)| Length = 544 Score = 31.2 bits (69), Expect = 2.2 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -2 Query: 570 ATAFFNEGNMSLARPLCELMQEANQEVPQWL 478 A +FF E N SL L +M+EA Q +P+ L Sbjct: 457 AISFFTEDNKSLGASLISIMREAKQNIPEEL 487
>DBP2_YEAST (P24783) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-) (DEAD box| protein 2) (p68-like protein) Length = 546 Score = 30.4 bits (67), Expect = 3.7 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 570 ATAFFNEGNMSLARPLCELMQEANQEVP 487 A +FF E N L L +M+EANQ +P Sbjct: 460 AISFFTEQNKGLGAKLISIMREANQNIP 487
>KSGA_BORPE (Q7VU11) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 265 Score = 30.4 bits (67), Expect = 3.7 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -3 Query: 509 RKPIRRFLSGWSAILPVPRLEVAEEAETADQAVA-VLGLVDVI 384 RK +RR L W+A+ P L +A A + VA +GL D + Sbjct: 212 RKMLRRVLDDWAALTPWDELGIAPTARAEEVGVAQFIGLADAL 254
>KSGA_BORPA (Q7W4J6) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 265 Score = 30.4 bits (67), Expect = 3.7 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -3 Query: 509 RKPIRRFLSGWSAILPVPRLEVAEEAETADQAVA-VLGLVDVI 384 RK +RR L W+A+ P L +A A + VA +GL D + Sbjct: 212 RKMLRRVLGDWAALTPWDELGIAPTARAEEVGVAQFIGLADAL 254
>KSGA_BORBR (Q7WG20) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 265 Score = 30.4 bits (67), Expect = 3.7 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -3 Query: 509 RKPIRRFLSGWSAILPVPRLEVAEEAETADQAVA-VLGLVDVI 384 RK +RR L W+A+ P L +A A + VA +GL D + Sbjct: 212 RKMLRRVLGDWAALTPWDELGIAPTARAEEVGVAQFIGLADAL 254
>NED4L_MOUSE (Q8CFI0) E3 ubiquitin-protein ligase NEDD4-like protein (EC| 6.3.2.-) (Nedd4-2) (NEDD4.2) Length = 1004 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/47 (34%), Positives = 29/47 (61%) Frame = -3 Query: 527 RYVN*CRKPIRRFLSGWSAILPVPRLEVAEEAETADQAVAVLGLVDV 387 R+VN +K + FL G++ +LP+ +++ +E E + + LG VDV Sbjct: 844 RFVNRVQKQMNAFLEGFTELLPIDLIKIFDENE-LELLMCGLGDVDV 889
>NED4L_HUMAN (Q96PU5) E3 ubiquitin-protein ligase NEDD4-like protein (EC| 6.3.2.-) (Nedd4-2) (NEDD4.2) Length = 975 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/47 (34%), Positives = 29/47 (61%) Frame = -3 Query: 527 RYVN*CRKPIRRFLSGWSAILPVPRLEVAEEAETADQAVAVLGLVDV 387 R+VN +K + FL G++ +LP+ +++ +E E + + LG VDV Sbjct: 815 RFVNRVQKQMNAFLEGFTELLPIDLIKIFDENE-LELLMCGLGDVDV 860
>NED4L_PONPY (Q5RBF2) E3 ubiquitin-protein ligase NEDD4-like protein (EC| 6.3.2.-) Length = 959 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/47 (34%), Positives = 29/47 (61%) Frame = -3 Query: 527 RYVN*CRKPIRRFLSGWSAILPVPRLEVAEEAETADQAVAVLGLVDV 387 R+VN +K + FL G++ +LP+ +++ +E E + + LG VDV Sbjct: 799 RFVNRVQKQMNAFLEGFTELLPIDLIKIFDENE-LELLMCGLGDVDV 844
>RM62_DROME (P19109) ATP-dependent RNA helicase p62 (EC 3.6.1.-)| Length = 719 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -2 Query: 564 AFFNEGNMSLARPLCELMQEANQEVPQWLE 475 AFF + N A+ L ++++EANQE+ LE Sbjct: 632 AFFTKNNAKQAKALVDVLREANQEINPALE 661
>DDX17_MOUSE (Q501J6) Probable ATP-dependent RNA helicase DDX17 (EC 3.6.1.-)| (DEAD box protein 17) Length = 650 Score = 29.3 bits (64), Expect = 8.3 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -2 Query: 570 ATAFFNEGNMSLARPLCELMQEANQEV 490 A FF GN+ AR L ++++EANQ + Sbjct: 439 AYTFFTPGNLKQARELIKVLEEANQAI 465
>DDX17_HUMAN (Q92841) Probable ATP-dependent RNA helicase DDX17 (EC 3.6.1.-)| (DEAD box protein 17) (RNA-dependent helicase p72) (DEAD box protein p72) Length = 650 Score = 29.3 bits (64), Expect = 8.3 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -2 Query: 570 ATAFFNEGNMSLARPLCELMQEANQEV 490 A FF GN+ AR L ++++EANQ + Sbjct: 439 AYTFFTPGNLKQARELIKVLEEANQAI 465 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,132,737 Number of Sequences: 219361 Number of extensions: 1120185 Number of successful extensions: 3535 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 3367 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3502 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
